Diffusion PySONIC (old) (master) History

R4670/tests
master7d33ab6ec1f96611f5ac91c…

May 25 2018

added script to test intermoleulcar pressure approximation.
7d33ab6ec1f9
·tlemaire on May 25 2018, 15:45.

Apr 18 2018

added IB testing in test_values script
70d9c59ab1d9
·tlemaire on Apr 18 2018, 18:24.

Apr 4 2018

replaced detectSpikes by the more robust findPeaks. added a plot_spikes script…
d5e56c2f9c40
·tlemaire on Apr 4 2018, 17:55.

Mar 19 2018

corrected TOFF integration error in SolverElec. added PW tests to test_basic.py
dd51b4283191
·tlemaire on Mar 19 2018, 20:03.

Mar 16 2018

renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to…
5b8f09fbd295
·tlemaire on Mar 16 2018, 12:06.

Mar 15 2018

added runMechSingle to simutils and MECH_run script
50e85131e3d9
·tlemaire on Mar 15 2018, 19:23.

Mar 13 2018

replaced DF by DC, and added pandas dataframes to store and retrieve simulation…
1edd575f6465
·Theo Lemaire on Mar 13 2018, 01:14.

Mar 12 2018

replaced channels by neurons
edd5594d9646
·Theo Lemaire on Mar 12 2018, 20:01.

Mar 7 2018

updated README and LICENCSE files. added extra BLS lookups. corrected titration…
63c842041ef8
·tlemaire on Mar 7 2018, 15:28.

Nov 27 2017

validated effective method for LeechT neuron, added that neuron to test_values.
1bb50e8f0025
·tlemaire on Nov 27 2017, 13:18.

Sep 12 2017

debugged double printing issue of logging statements
6249b5298f4c
·tlemaire on Sep 12 2017, 18:56.
added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 6 2017

replaced getopt with argparse in test scripts
ffed8b864bbf
·tlemaire on Sep 6 2017, 17:10.
replaced printPct by progressbar
7fff2117cd10
·tlemaire on Sep 6 2017, 14:34.

Sep 3 2017

added smart loading of derived parameters from lookup file at BLS initiation
6688904b2a82
·tlemaire on Sep 3 2017, 19:15.
test pre-commit hook
9015dddabee1
·tlemaire on Sep 3 2017, 18:01.
updated test_values
f51d67fdf64a
·tlemaire on Sep 3 2017, 17:23.
added profiling option for each method inside test_basic.py, using cProfile and…
92e2cd326a4e
·tlemaire on Sep 3 2017, 16:53.

Sep 2 2017

separated test into test_basic (initiating solvers and running simple…
f875411afd08
·tlemaire on Sep 2 2017, 18:44.

Aug 30 2017

debugged and validated new runEffective method: interpolation datasets at…
cf8e6794b04c
·tlemaire on Aug 30 2017, 15:46.

Aug 29 2017

added getNeuronsDict function to utils
c5cad185b222
·tlemaire on Aug 29 2017, 15:38.

Aug 28 2017

optimized effective method: 2D (amp, charge) coefficients interpolators are…
1ea422ad10eb
·tlemaire on Aug 28 2017, 18:02.
updated run functions to deal with zero offset. updated test_graphs
90c71fb8d8e5
·tlemaire on Aug 28 2017, 15:26.
updated test_graphs.py
3120330fdccd
·tlemaire on Aug 28 2017, 14:40.
renamed LoadParams to load_BLS_params
c61b8e3492f6
·tlemaire on Aug 28 2017, 14:20.
updated test_basic.py with more thorough tests. Added more thorough input…
b50efb81b3cb
·tlemaire on Aug 28 2017, 14:14.

Aug 25 2017

added titrateEStim and titrateEStimBatch functions
c9053e689690
·tlemaire on Aug 25 2017, 14:59.
Added pulsed stimuli handling to SolverElec. Implemented moved titration…
3c218a52595b
·tlemaire on Aug 25 2017, 13:06.

Aug 23 2017

moved some utils functions into simutils & pltutils modules
4f9a8fd2aed4
·tlemaire on Aug 23 2017, 16:28.
first commit to c4science
abfba2e921d7
·tlemaire on Aug 23 2017, 14:28.