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R8218/ShoulderCase
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CommitAuthorDetailsCommitted
54a722355cfbboubat
fix:Scapula: Change the shoulder side selection to load auto landmarks. 
Jul 7 2020
89fc192eeb56boubat
refactor:plot: Enhance and update plot functions of classes. 
Jul 3 2020
63218be9cfdbboubat
doc: Add file destination in createRotatorCuffSlices(). 
Jun 19 2020
92a343b4b0d8boubat
docs: Update or add documentation for all classes in ./ShoulderCase. 
Jun 16 2020
50e9b38f4d45boubat
refactor:CasesFinder: Change concatenation for fullfile() utilization. Add… 
Jun 15 2020
f653ae5039adboubat
refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder… 
Jun 15 2020
1b136b35d37dboubat
refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid… 
Jun 15 2020
6c0cad5b7b18boubat
refactor:ShoulderCase: Update objects structure in appendToCSV() and output()… 
Jun 9 2020
0335f4c37b4aboubat
feat:ShoulderCaseLoader: Add a method to load all the cases in the database. 
Jun 9 2020
9e9dc90cf8c0boubat
feat:MusclesContainer:clearSummary: Implement the empty state of… 
Jun 9 2020
286d8dd80e8aboubat
refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is… 
Jun 9 2020
b9fd2d7c524fboubat
refactor:CoordinateSystem: Extract methods toward Scapula and create the… 
Jun 8 2020
6c7ee2e85becboubat
perf:cellArraysDifference: Set new algorithm that takes advantage of builtin… 
Jun 8 2020
29a3fa52703bboubat
fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to… 
Jun 8 2020
62f58690ff52boubat
files: Move all the classes in their @Class folder. 
Jun 8 2020
7599224428a0boubat
feat:MusclesContainer: Implement isEmpty() class' method and update other… 
Jun 8 2020
9ef4a4460815boubat
refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent… 
Jun 8 2020
57529901bdb2boubat
refactor: Update system to use new muscles classes. 
Jun 5 2020
bfc2bd97ce97boubat
refactor:ShoulderCaseLoader: Split the loadCase method into two. 
Jun 5 2020
cdc2cc5bd1d2boubat
refactor:Shoulder:muscles: Update property to new MusclesContainer class. 
Jun 5 2020
62f82cd4aa84boubat
feat:MusclesContainer:plot: Implement a method that plots segmentation results. 
Jun 5 2020
5e10ddc4dd02boubat
refactor:Muscles: Remove deprecated class Muscles. 
Jun 5 2020
001712d94142boubat
feat:MuscleMeasurer: Implement new class to measure degeneration related values. 
Jun 5 2020
215393eb1cf8boubat
feat:MusclesContainer: Update and move the slicing and segmenting methods here. 
Jun 5 2020
38489099f4c6boubat
feat:Muscle:measure: Implement the method that replaces Muscles.degeneration. 
Jun 5 2020
b00418910a93boubat
refactor:MusclesContainer: Change a property type. Add row names to table. 
Jun 5 2020
ed6300bff59fboubat
feat: Add classes to replace the current Muscles class 
Jun 4 2020
013bf5adb5efboubat
doc: Update propagateDataPath function description 
Jun 4 2020
5d00832462bcboubat
fix:paths: Fix errors from the previous commit. Update ShoulderCaseLoader. 
Jun 3 2020
109a4c7958ecboubat
build:ShoulderCase: Give the access to ShoulderCase constructor to… 
Jun 3 2020
8ace928e67aeboubat
fix:Shoulder: Change shoulder.dataPath not to be set at construction. 
Jun 2 2020
6c2366ede060boubat
feat:Shoulder: Add a dataPath property 
Jun 2 2020
fd75f40ff87dboubat
refactor:Muscles: Extract methods from muscles.degeneration dedicated to the… 
May 28 2020
241cdc0e8151boubat
fix:Muscles: Fix typos and errors in new degeneration functions 
May 28 2020
c4835c80d01cboubat
refactor:Muscles:plot: Update files path. 
May 28 2020
5f5d575e2969boubat
refactor:Muscles: Change property's name 
May 28 2020
7cb91009bd76boubat
refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from… 
May 27 2020
8ef31b7c3a59boubat
feat:Muscles:plot Implement the plot for this class, displaying the segmented… 
May 27 2020
5307bce7a770boubat
refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff… 
May 27 2020
379c8838e5d5boubat
refactor:Muscles:newDegeneration: Extract methods that save the results of… 
May 27 2020
4620dde3f905boubat
refactor:Muscles:newDegeneration: Extract the call to python commands into a… 
May 27 2020
04bab1535231boubat
feat:Muscles:newDegeneration: Add a function to save the slice where it's… 
May 27 2020
ebd964b44837boubat
feat:Muscles: Add a slicedPixelSpacing property. 
May 27 2020
850447626163boubat
feat:Muscles:newDegeneration: Save the image to be segmented in the case's… 
May 27 2020
c262f90f92faboubat
refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration… 
May 20 2020
4bde30b85802boubat
refactor:Muscles: Add some properties to prepare the refactoring of Muscles. 
May 20 2020
a1e57f22a675boubat
refactor:DicomVolume: Update and move functions to separate files for the three… 
May 20 2020
bde234e812e5boubat
feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other… 
May 13 2020
d06062e4be4bboubat
fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution… 
May 13 2020
953a835372e7boubat
feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method 
May 12 2020
3001f3d3df2eboubat
refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution(). 
May 12 2020
017725062789boubat
feat:DicomVolume: Add a method to get the point coordinates given the point… 
May 12 2020
eca90fb31dbcboubat
feat:DicomeVolumeSlicer: Implement the prototype of crop and rotation methods… 
May 8 2020
7acd12e09741boubat
refactor:DicomVolumeNormaliser: Delete deprecated normalising method 
May 5 2020
4382a0e51879boubat
perf:Plane:plot: Change the radius argument to be an optional argument 
May 5 2020
a759c3f2483cboubat
perf:Plane:plot: Update the plot method of Plane to show a circle 
May 4 2020
b3581e059416boubat
feat:Circle: Add a Circle object 
May 4 2020
bf41261b06efboubat
feat:Plane: Implement the plot method for the PLane class 
May 4 2020
a90c6220da75boubat
extract:DicomVolume: Extract methods from DicomeVolumeSlicer class to new… 
May 4 2020
fec0e26ef0bbboubat
refactor:Muscles&DicomeVolumeSlicer: Extract the last methods added to the… 
Apr 29 2020
00d767138ff5boubat
feat:Muscles: Add functions to get a slice of a dicom volume 
Apr 28 2020
036a5f51d147boubat
files: Create the @Muscles folder for the Muscles object 
Apr 28 2020
af7f9a58f1e8boubat
feat:ShoulderCaseLoader:loadCase: Add the root path and the dicom path to the… 
Apr 28 2020
e76c804d8331boubat
feat:CoordinateSystem.m: Add a new function to express local coordinates in… 
Apr 23 2020
f76b662bc8cbboubat
fix:Shoulder.m:plot: Change the glenoid sphere center for explicit attribution 
Apr 23 2020
33e930c3595cboubat
refactor:ShoulderCase.m:plot: Change the ShoulderCase.plot method to call the… 
Apr 22 2020
b22704467228boubat
refactor:Shoulder.m:plot: Move the plot method from the ShoulderCase object to… 
Apr 22 2020
1208bd216f86boubat
feat: Add the MethodsMonitor abstract class that monitor and programm child… 
Apr 9 2020
ac653395da5bboubat
feat: Add a function that substract the elements of cell array from another… 
Apr 9 2020
f3149ac75f22boubat
feat: Add a format.string constant property to Timer object. 
Apr 9 2020
3a3dd5b033deboubat
fix: Adapt SCaseIDParser to new version of FileExtractor 
Mar 27 2020
7bcac05318f2boubat
perf: Assert validity of inputs and output of FileExtractor 
Mar 27 2020
ec894e061479boubat
perf: Change the output of FileExtractor object to directly return the variable… 
Mar 27 2020
a9ac266193d9boubat
fix: Reduce the required number of groove points in scapula CoordinateSystem 
Mar 25 2020
8fd68c5307eaboubat
fix: Orient the glenoid.centerLine toward ML 
Mar 25 2020
f522e25284c2boubat
fix: Re-create the glenoid.walch property and change the auto-measurements… 
Mar 23 2020
d039ccbc6e2bboubat
fix: Change reference to glenoid.SCase in glenoid.calcDensity 
Mar 21 2020
a00df81283deboubat
fix: Change the reference to glenoid.SCase for glenoid.scapula.shoulder.SCase… 
Mar 21 2020
d527ccbae642boubat
fix: Change the access of the contructor of Glenoid 
Mar 21 2020
7a38bfa38175boubat
fix: Add a missing 'end' statement in GlenoidManual 
Mar 21 2020
7b83430b827aboubat
fix: Correct typo 
Mar 21 2020
64906d21ca8fboubat
refactor: Change the way the other objects handle the new GlenoidAuto/Manual… 
Mar 21 2020
37f7244f5b40boubat
refactor: Extract one abstract and two manual/auto object out of the Glenoid… 
Mar 21 2020
0813f9597cd9boubat
fix: Change python path dependencies to be chosen in config file for muscles. 
Mar 19 2020
16833d2f1296boubat
refactor: Delete the output of glenoid.measureVersionAndInclination 
Mar 19 2020
5a539868d490boubat
refactor: Delete CT2Scapula method, outdated by the CoordinateSystem.express… 
Mar 19 2020
b8602c242c8eboubat
refactor: Implement the glenoid.morphology method to call the dedicated… 
Mar 18 2020
ed0abb1ac3e9boubat
refactor: Extract a glenoid method to measure its center line 
Mar 18 2020
83cc51e1abd1boubat
fix: Change methods' names to fit their files' names 
Mar 18 2020
03e98c663eacboubat
refactor: Change two glenoid methods' names that gave useless informations 
Mar 18 2020
1483e3e34bd3boubat
refactor: Extract a method to measure glenoid version and inclination values 
Mar 18 2020
dab0db10293aboubat
feat: Add a method to measure the glenoid antero-superior angle with PCA 
Mar 17 2020
08283f5c6c9aboubat
refactor: Extract a method from glenoid.morphology that expresses the glenoid… 
Mar 17 2020
94f894f50be6boubat
feat: Add a function to project vectors on a vector 
Mar 17 2020
58f7d71b384bboubat
feat: Add methods to project points on the three planes spaned by a… 
Mar 17 2020
1343fa960e9bboubat
refactor: Extract methods to set glenoid width and height with PCA 
Mar 16 2020
12349073d5f7boubat
refactor: Change variable name in glenoid.measureCenter.m 
Mar 16 2020
9f8d05f11f92boubat
refactor: Extract method to measure glenoid depth 
Mar 16 2020
9f61b0394a61boubat
refactor: Split measureSCase into three part 
Mar 6 2020
347f905db80cboubat
refactor: Same as previous commit 
Mar 6 2020
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