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R8218/ShoulderCase
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CommitAuthorDetailsCommitted
3fa1591c88a9boubat
refactor: (re)Add the selection of smooth dicom for rotator cuff slices. 
Aug 6 2020
86ab4c9fc0c3boubat
fix: Change verified shoulder in configCamera. 
Aug 6 2020
0013fd4ddd1aboubat
refactor: Modify zoom, light position and default scapula axes in configCamera. 
Aug 5 2020
bfa30844d304boubat
fix: Correct name string in MusclesContainer.plot(). 
Aug 5 2020
47af1ac7f80eboubat
refactor: Update ShoulderCase to SCaseIDParser modifications. 
Aug 5 2020
7568f1ca7ccdboubat
refactor: Change filename creation to use fullfile(). 
Aug 5 2020
be3f45097169boubat
refactor: Add arguments to MusclesContainer methods to choose combinations of… 
Aug 5 2020
453355cdf2e7boubat
refactor: Change displayed scapula surface to be opaque. 
Aug 5 2020
47a8997f16daboubat
refactor: Change displayed scapula surface to be opaque. View axes are now from… 
Aug 5 2020
a7767961504aboubat
feat: Add a method to sort scapula's groove points lateral to medial. 
Aug 4 2020
9c2a857c1e10boubat
refactor: Delete a few commands in ShoulderCasePlotter.plot(). 
Aug 4 2020
01bf191f3e58boubat
refactor: Rename axes initialisation method and add custom toolbar. 
Aug 4 2020
77c8270f788bboubat
feat: Add new buttons to ShoulderCasePlotter. 
Aug 4 2020
3d688f719941boubat
feat: Add camera related methods to ShoulderCasePlotter. 
Aug 4 2020
a6c0ef26a380boubat
refactor: Make SoulderCase.plot return the ShoulderCasePlotter. 
Aug 4 2020
997424434cadboubat
refactor: Update shoulder case plot functions according to AT feddback. 
Jul 31 2020
59e8c1e80ec4boubat
feat: Add methods to Scapula to export its landmakrs into its Amira folder. 
Jul 30 2020
d034858e1cebboubat
feat: Implement methods to export landmarks in Amira file. 
Jul 30 2020
fee8d639a92cboubat
refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader. 
Jul 28 2020
4f06f9735153boubat
refactor: Update UpdatableText. 
Jul 28 2020
764e10153ab1boubat
feat: Add a class to export auto landmarks. 
Jul 28 2020
3b926a83c8d4boubat
refactor: Revert changes from last commit that alters measurements. 
Jul 23 2020
ef22a3fab2abboubat
feat: Updates to work with muscles manual segmentations. 
Jul 23 2020
85705b4acfc2boubat
refactor: Correct displayed sentence. 
Jul 23 2020
b226de094ef2boubat
refactor: Update classes in order to work with ShoulderCasePlotter. 
Jul 23 2020
4432eeac5673boubat
feat: Implement the ShoulderCasePlotter class. 
Jul 23 2020
7f8a638cbe20boubat
refactor: Remove deprecated ShoulderCase plot related functions. 
Jul 23 2020
167e44723504boubat
Merge branch 'boubat' of https://c4science. 
Jul 22 2020
50f61df44b04boubat
refactor: Change properties accessibility to private. 
Jul 22 2020
82f271b12fccboubat
fix: Fix loadAllCases() to actually return the loaded cases. 
Jul 22 2020
7891768d78cbboubat
refactor: Assert that case is found in loadCase() 
Jul 22 2020
0f2e1f6b4147boubat
refactor: Implement a new ShoulderCaseLoader class. 
Jul 22 2020
0d9a87ad20f8boubat
refactor: Remove deprecated classes. 
Jul 22 2020
4c53163888f2boubat
feat: Add class to print updatable message in the command window. 
Jul 22 2020
0696cf43f420boubat
fix: Fix two methods. 
Jul 22 2020
a8418a3b1b1eboubat
refactor: Move function to SCaseIDParser class. 
Jul 22 2020
b7daf62ea39fboubat
feat: Implement plot() method for Glenoid class. 
Jul 20 2020
7b63ff442ae9boubat
fix: Fix typo. 
Jul 7 2020
7337316bd8d8boubat
Merge branch 'boubat' 
Jul 7 2020
54a722355cfbboubat
fix:Scapula: Change the shoulder side selection to load auto landmarks. 
Jul 7 2020
89fc192eeb56boubat
refactor:plot: Enhance and update plot functions of classes. 
Jul 3 2020
e58d4529f576boubat
Merge branch 'boubat' 
Jun 22 2020
63218be9cfdbboubat
doc: Add file destination in createRotatorCuffSlices(). 
Jun 19 2020
92a343b4b0d8boubat
docs: Update or add documentation for all classes in ./ShoulderCase. 
Jun 16 2020
50e9b38f4d45boubat
refactor:CasesFinder: Change concatenation for fullfile() utilization. Add… 
Jun 15 2020
f653ae5039adboubat
refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder… 
Jun 15 2020
1b136b35d37dboubat
refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid… 
Jun 15 2020
6c0cad5b7b18boubat
refactor:ShoulderCase: Update objects structure in appendToCSV() and output()… 
Jun 9 2020
0335f4c37b4aboubat
feat:ShoulderCaseLoader: Add a method to load all the cases in the database. 
Jun 9 2020
9e9dc90cf8c0boubat
feat:MusclesContainer:clearSummary: Implement the empty state of… 
Jun 9 2020
286d8dd80e8aboubat
refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is… 
Jun 9 2020
b9fd2d7c524fboubat
refactor:CoordinateSystem: Extract methods toward Scapula and create the… 
Jun 8 2020
6c7ee2e85becboubat
perf:cellArraysDifference: Set new algorithm that takes advantage of builtin… 
Jun 8 2020
29a3fa52703bboubat
fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to… 
Jun 8 2020
62f58690ff52boubat
files: Move all the classes in their @Class folder. 
Jun 8 2020
7599224428a0boubat
feat:MusclesContainer: Implement isEmpty() class' method and update other… 
Jun 8 2020
9ef4a4460815boubat
refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent… 
Jun 8 2020
57529901bdb2boubat
refactor: Update system to use new muscles classes. 
Jun 5 2020
bfc2bd97ce97boubat
refactor:ShoulderCaseLoader: Split the loadCase method into two. 
Jun 5 2020
cdc2cc5bd1d2boubat
refactor:Shoulder:muscles: Update property to new MusclesContainer class. 
Jun 5 2020
62f82cd4aa84boubat
feat:MusclesContainer:plot: Implement a method that plots segmentation results. 
Jun 5 2020
5e10ddc4dd02boubat
refactor:Muscles: Remove deprecated class Muscles. 
Jun 5 2020
001712d94142boubat
feat:MuscleMeasurer: Implement new class to measure degeneration related values. 
Jun 5 2020
215393eb1cf8boubat
feat:MusclesContainer: Update and move the slicing and segmenting methods here. 
Jun 5 2020
38489099f4c6boubat
feat:Muscle:measure: Implement the method that replaces Muscles.degeneration. 
Jun 5 2020
b00418910a93boubat
refactor:MusclesContainer: Change a property type. Add row names to table. 
Jun 5 2020
ed6300bff59fboubat
feat: Add classes to replace the current Muscles class 
Jun 4 2020
013bf5adb5efboubat
doc: Update propagateDataPath function description 
Jun 4 2020
5d00832462bcboubat
fix:paths: Fix errors from the previous commit. Update ShoulderCaseLoader. 
Jun 3 2020
109a4c7958ecboubat
build:ShoulderCase: Give the access to ShoulderCase constructor to… 
Jun 3 2020
8ace928e67aeboubat
fix:Shoulder: Change shoulder.dataPath not to be set at construction. 
Jun 2 2020
6c2366ede060boubat
feat:Shoulder: Add a dataPath property 
Jun 2 2020
fd75f40ff87dboubat
refactor:Muscles: Extract methods from muscles.degeneration dedicated to the… 
May 28 2020
241cdc0e8151boubat
fix:Muscles: Fix typos and errors in new degeneration functions 
May 28 2020
c4835c80d01cboubat
refactor:Muscles:plot: Update files path. 
May 28 2020
5f5d575e2969boubat
refactor:Muscles: Change property's name 
May 28 2020
7cb91009bd76boubat
refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from… 
May 27 2020
8ef31b7c3a59boubat
feat:Muscles:plot Implement the plot for this class, displaying the segmented… 
May 27 2020
5307bce7a770boubat
refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff… 
May 27 2020
379c8838e5d5boubat
refactor:Muscles:newDegeneration: Extract methods that save the results of… 
May 27 2020
4620dde3f905boubat
refactor:Muscles:newDegeneration: Extract the call to python commands into a… 
May 27 2020
04bab1535231boubat
feat:Muscles:newDegeneration: Add a function to save the slice where it's… 
May 27 2020
ebd964b44837boubat
feat:Muscles: Add a slicedPixelSpacing property. 
May 27 2020
850447626163boubat
feat:Muscles:newDegeneration: Save the image to be segmented in the case's… 
May 27 2020
c262f90f92faboubat
refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration… 
May 20 2020
4bde30b85802boubat
refactor:Muscles: Add some properties to prepare the refactoring of Muscles. 
May 20 2020
a1e57f22a675boubat
refactor:DicomVolume: Update and move functions to separate files for the three… 
May 20 2020
bde234e812e5boubat
feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other… 
May 13 2020
d06062e4be4bboubat
fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution… 
May 13 2020
953a835372e7boubat
feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method 
May 12 2020
3001f3d3df2eboubat
refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution(). 
May 12 2020
017725062789boubat
feat:DicomVolume: Add a method to get the point coordinates given the point… 
May 12 2020
a04f3ed203e2boubat
Merge branch 'Bashardoust_SystCoord' 
May 8 2020
eca90fb31dbcboubat
feat:DicomeVolumeSlicer: Implement the prototype of crop and rotation methods… 
May 8 2020
7acd12e09741boubat
refactor:DicomVolumeNormaliser: Delete deprecated normalising method 
May 5 2020
4382a0e51879boubat
perf:Plane:plot: Change the radius argument to be an optional argument 
May 5 2020
a759c3f2483cboubat
perf:Plane:plot: Update the plot method of Plane to show a circle 
May 4 2020
b3581e059416boubat
feat:Circle: Add a Circle object 
May 4 2020
bf41261b06efboubat
feat:Plane: Implement the plot method for the PLane class 
May 4 2020
a90c6220da75boubat
extract:DicomVolume: Extract methods from DicomeVolumeSlicer class to new… 
May 4 2020
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