Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
master1343fa960e9b101e27f0a89…

Mar 16 2020

refactor: Extract methods to set glenoid width and height with PCA
1343fa960e9b
·boubat on Mar 16 2020, 19:18.
refactor: Change variable name in glenoid.measureCenter.m
12349073d5f7
·boubat on Mar 16 2020, 14:17.
refactor: Extract method to measure glenoid depth
9f8d05f11f92
·boubat on Mar 16 2020, 14:02.

Mar 6 2020

refactor: Split measureSCase into three part
9f61b0394a61
·tag: v1.0.3
·boubat on Mar 6 2020, 18:04.
refactor: Same as previous commit
347f905db80c
·boubat on Mar 6 2020, 18:02.
refactor: Extrcat
79b6204241ee
·boubat on Mar 6 2020, 18:01.

Feb 28 2020

refactor: Change measureSCase to handle the new ShoulderCase properties
65634b409435
·boubat on Feb 28 2020, 15:59.
refactor: Change the implementation of getDataRootPath to use the FileExtractor…
ceac7cb096ef
·boubat on Feb 28 2020, 15:28.
refactor: Split the shoulder property into two new shoulderManual and…
2daf1a5e9e5e
·boubat on Feb 28 2020, 15:26.
refactor: Change the references to SCase for references to the direct parent…
b6e8a76a4b20
·boubat on Feb 28 2020, 15:24.
refactor: Split Scapula class into one abstract and two concrete classes
7f6bf5ba7567
·boubat on Feb 28 2020, 15:21.
refactor: Split Shoulder class into one abstract and two concrete classes
1811acd93a1a
·boubat on Feb 28 2020, 15:19.

Feb 27 2020

refactor: Give properties their values with config file instead of hard code
fb02d552250f
·boubat on Feb 27 2020, 16:25.
refactor: Specify method's scope in method's name
1d78cc59c619
·boubat on Feb 27 2020, 16:23.
feat: Add classes to get text from files
7127638137a7
·boubat on Feb 27 2020, 15:32.

Feb 26 2020

feat: Add a method to load a ShoulderCase
47f7c965deb4
·tag: v1.0.2
·boubat on Feb 26 2020, 17:26.
refactor: Change methods name containing 'SCase' with 'Case'
c5c2bb15d20f
·boubat on Feb 26 2020, 17:25.
refactor: Change names of classes
2690391c0421
·boubat on Feb 26 2020, 15:27.
feat: Add a Logger class to handle log files
07e59409ca60
·boubat on Feb 26 2020, 14:20.
refactor: Remove the future poltergeist class SCaseDB
42a5a749befe
·boubat on Feb 26 2020, 14:19.

Feb 25 2020

refactor: Remove the obsolete TimerData class
53efc4d4ce69
·boubat on Feb 25 2020, 15:41.
refactor: Change the global property type from containers.Map to LinkedList and…
1af93e155bf6
·boubat on Feb 25 2020, 15:38.
feat: Add a class that implements linked lists
eb188026359a
·boubat on Feb 25 2020, 15:34.

Feb 21 2020

feat: Add a function that asserts that a text matches an expression
2f057628eb1b
·boubat on Feb 21 2020, 18:01.
feat: Add a function that returns the current operating system's path separator
e24dc645d1f2
·boubat on Feb 21 2020, 17:59.
feat: Add an object that measures multiple elapsed times
0f2114220d77
·boubat on Feb 21 2020, 17:57.
feat: Add a class that validates shoulder cases ID
ec160183ca4d
·boubat on Feb 21 2020, 17:56.
feat: Add an object to search shoulder cases in a directory tree
5f21076d32d6
·boubat on Feb 21 2020, 17:54.
feat: Add objects that map shoulder cases paths to shoulder cases ID
8170d98ab94f
·boubat on Feb 21 2020, 17:53.

Feb 10 2020

fix: Make the CoordinateSystem.isOrthogonal method independent from axes' norms
3d35f3b9bb6a
·tag: v1.0.1
·boubat on Feb 10 2020, 17:16.
docs: Add details in a method description
38326d1147b1
·boubat on Feb 10 2020, 15:50.

Feb 5 2020

refactor: Extract methods from coordSysSet. The main part is given to the new…
1e57e9f2e6e0
·boubat on Feb 5 2020, 16:06.
feat: Add the new Plane class that can create and use 3D planes
ccb224d9fe7b
·boubat on Feb 5 2020, 16:04.
feat: Add a function to find the longest vector among a given array of vectors
263e0a20f0a3
·boubat on Feb 5 2020, 16:03.
perf: Complete the methods to set a coordinate system
c3271100b4b6
·boubat on Feb 5 2020, 16:02.
feat: Add a function to choose the direction of a vector toward another one
b2c8a146a3e1
·boubat on Feb 5 2020, 16:00.

Feb 3 2020

feat: Add a class for coordinate systems
2b0026a5085b
·boubat on Feb 3 2020, 17:26.

Jan 30 2020

feat: Add a method for measuring glenoid width and height
c150cfa2519e
·boubat on Jan 30 2020, 20:56.
refactor: Delete the deprecated Ellipsoid class and related methods
72d1984dfd22
·boubat on Jan 30 2020, 15:36.
feat: Add the glenoid surface mean point in a sub-property
4fc5694ee6cd
·boubat on Jan 30 2020, 12:27.

Jan 29 2020

feat: Add the Ellipsoid object for the glenoid fitted ellipsoid
6bcbf0e61ee9
·boubat on Jan 29 2020, 17:44.

Jan 28 2020

Merge branch 'master' into boubat
e619a2fe8075
·boubat on Jan 28 2020, 19:14.
feat: Add a method to express points in local coordinate system
676c3acb15a8
·boubat on Jan 28 2020, 19:11.
feat: Add a method for measuring glenoid radius thanks to a fitted sphere
41a56b82b0f8
·boubat on Jan 28 2020, 19:08.
feat: Extract a method used for measuring glenoid center
622dbc650abe
·boubat on Jan 28 2020, 19:06.
fix: Move the Sphere class to ShoulderCase/
492db744a284
·boubat on Jan 28 2020, 18:54.
feat: Add the Sphere object for the glenoid fitted sphere
7a717ce821eb
·boubat on Jan 28 2020, 17:44.

Jan 27 2020

refactor: Extract glenoid center measurement methods out from glenoid…
8f8aa39e7bd4
·boubat on Jan 27 2020, 17:23.

Jan 23 2020

feat&fix: Add excel data to SCase. Fix condition in argument handling.
4abb8ef85acb
·tag: v1.0.0
·boubat on Jan 23 2020, 12:17.

Jan 16 2020

perf: Clean listSCase method
9480bf12af2d
·boubat on Jan 16 2020, 16:21.
feat: Add a pool object property
1cc9196f795c
·boubat on Jan 16 2020, 14:24.

Jan 15 2020

feat: Add listSCase method
860f016ff211
·boubat on Jan 15 2020, 18:00.
Merge branch 'master' of https://c4science.
ef70a62c15b4
·boubat on Jan 15 2020, 12:12.

Jan 13 2020

creation of the SCaseDB class
47a4883679f2
·boubat on Jan 13 2020, 18:36.
patch
4d59db453045
·boubat on Jan 13 2020, 09:57.

Jan 10 2020

reorganize measureSCase loops and extend the 'auto' loop
b23e1f95940f
·boubat on Jan 10 2020, 11:42.

Jan 7 2020

dicominfopath now correctly chosen pointing to the dicom file in the middle of…
6864e678a34d
·boubat on Jan 7 2020, 10:09.

Dec 20 2019

measureScase now auto computes the RC muscles degenration, and exports meta…
d19a22d656dc
·boubat on Dec 20 2019, 14:46.

Aug 27 2019

Small correction in README.md.
73571568d370
·boubat on Aug 27 2019, 15:05.

Aug 22 2019

The catch now return a correct outputArg to detect that DICOM files couldn't be…
24267f0a0d88
·boubat on Aug 22 2019, 10:31.

Aug 9 2019

Modification in arguments handling by measureSCase. rawFromExcel changed back…
81c136978cc4
·boubat on Aug 9 2019, 13:54.

Aug 8 2019

Fixed and modified according to A.Terrier comments
2ede99566008
·boubat on Aug 8 2019, 17:47.

Jul 31 2019

fopen() error 'fixed'. (No, apparently you can't fopen a file already opened in…
896b29123d60
·boubat on Jul 31 2019, 17:13.
Add whole database saving, upgrade measureSCase arguments verification, update…
48fb99446bf3
·boubat on Jul 31 2019, 16:54.
update logfile writing.
bca67b9e4cc2
·boubat on Jul 31 2019, 11:14.

Jul 30 2019

Filename changed back to 'anatomy.csv'
502abc4d511d
·boubat on Jul 30 2019, 16:51.
Some fixes and documentation. Ready to be merged.
8663a605763c
·boubat on Jul 30 2019, 16:48.
ShoulderCase.saveCSV becomes ShoulderCase.appendToCSV and have to be given a…
2edbc5ad5089
·boubat on Jul 30 2019, 12:56.
rawFromExcel can now be called on a linux system (e.g lbovenus.epfl.ch). Little…
b75dd8c49177
·boubat on Jul 30 2019, 12:22.
listSCase fixed and commented
82d00ff08110
·boubat on Jul 30 2019, 10:48.
small updates
fd6606e5d5fe
·boubat on Jul 30 2019, 10:29.
Revert "small updates"
be8ed18438e7
·boubat on Jul 30 2019, 10:12.
small updates
abcd19405ed2
·boubat on Jul 30 2019, 10:06.

Jul 29 2019

small correction in ShoulderCase.saveCSV
3e81587dadce
·boubat on Jul 29 2019, 17:27.
Add file closing in ShoulderCase.saveCSV
530f732efce3
·boubat on Jul 29 2019, 17:25.
implementation of ShoulderCase.saveCSV method
c3f112e6da73
·boubat on Jul 29 2019, 17:22.
Add more detailed error message and the check for updateCalculations condition
6584e4c2320b
·boubat on Jul 29 2019, 16:08.
Add a few comments and delete the former code
f518514550ef
·boubat on Jul 29 2019, 15:46.
The arguments available for measureSCase are now: 'UpdateGlenoidDensity'…
3ff6ec64c458
·boubat on Jul 29 2019, 15:34.
Revert "The arguments available for measureSCase are now…
7a04e1267d56
·boubat on Jul 29 2019, 15:32.
The arguments available for measureSCase are now: 'UpdateGlenoidDensity'…
c48d5c726896
·boubat on Jul 29 2019, 15:28.
add details about SCase errors
fdc561c14bbf
·boubat on Jul 29 2019, 13:22.
Erase redundant condition
56583bef420d
·boubat on Jul 29 2019, 10:01.
Initialisation. Add config file
83e825bae9a9
·boubat on Jul 29 2019, 09:35.

Jul 25 2019

Merge branch 'master' of https://c4science.
8ed5ddd994cb
·aterrier on Jul 25 2019, 06:34.
Update glenoid.m to avoid error when glenoid surface is missing
fa5091109b13
·aterrier on Jul 25 2019, 06:32.

Jul 5 2019

Merge branch 'master' of https://c4science.
1d163de2f1fc
·tag: v0.0.0
·aterrier on Jul 5 2019, 23:36.
HumeruSphere.m corrected to get humerus lanmarks in amira dirtectory
7ac612db8877
·aterrier on Jul 5 2019, 23:34.

Jun 29 2019

Merge update
62cc6f27f9e0
·aterrier on Jun 29 2019, 23:43.
Inconcistency in humerus preventing pull
fdc3d314a9c8
·aterrier on Jun 29 2019, 23:29.
Small changes in measurSCase.m
33761c0c763e
·aterrier on Jun 29 2019, 23:21.
Error management for landmrks loading
05446cede36c
·aterrier on Jun 29 2019, 22:56.
Merge branch 'master' of https://c4science.
ed71d16061ef
·aterrier on Jun 29 2019, 22:54.
Samll change in measureSCase
554c62397c32
·aterrier on Jun 29 2019, 22:54.
Merge branch 'master' of https://c4science.
0baa20c6be88
·aterrier on Jun 29 2019, 22:44.
Cleaned version of plot
1388e204762e
·aterrier on Jun 29 2019, 22:44.
Added shell command measureSCase.sh to run measureSCase.m in background
995f7eb061bc
·aterrier on Jun 29 2019, 01:26.

Jun 28 2019

Remove unwanted files
7c9e17a5edb9
·aterrier on Jun 28 2019, 23:32.
remove again log and config
8cf554ea38ec
·aterrier on Jun 28 2019, 23:27.
Merge last conflicts
99922bd71ad2
·aterrier on Jun 28 2019, 22:44.

Historymaster1343fa960e9b101e27f0a89…

Mar 16 2020

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History
master1343fa960e9b101e27f0a89…