Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
master92a343b4b0d86ae75f2bbac…

Jun 16 2020

docs: Update or add documentation for all classes in ./ShoulderCase.
92a343b4b0d8
·boubat on Jun 16 2020, 16:29.

Jun 15 2020

refactor:CasesFinder: Change concatenation for fullfile() utilization. Add…
50e9b38f4d45
·boubat on Jun 15 2020, 18:08.
refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder…
f653ae5039ad
·boubat on Jun 15 2020, 17:07.
refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid…
1b136b35d37d
·boubat on Jun 15 2020, 16:35.

Jun 9 2020

docs:README: Add the description of the config file.
980d5f3ed7e4
·boubat on Jun 9 2020, 18:32.
docs:README: Update doc.
1dc4a0a19ff2
·boubat on Jun 9 2020, 15:39.
refactor:ShoulderCase: Update objects structure in appendToCSV() and output()…
6c0cad5b7b18
·boubat on Jun 9 2020, 15:32.
refactor:measureSCase: Change the creation of SCaseDB variable to take…
807532073f6c
·boubat on Jun 9 2020, 15:31.
refactor:measureSCase: Replace listSCase() utilisation with ShoulderCaseLoader…
84d45f3e79e7
·boubat on Jun 9 2020, 14:50.
feat:ShoulderCaseLoader: Add a method to load all the cases in the database.
0335f4c37b4a
·boubat on Jun 9 2020, 14:16.
refactor:measureSCase: Update verification of exisiting muscles data.
188cadab0290
·boubat on Jun 9 2020, 12:59.
feat:MusclesContainer:clearSummary: Implement the empty state of…
9e9dc90cf8c0
·boubat on Jun 9 2020, 12:55.
refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is…
286d8dd80e8a
·boubat on Jun 9 2020, 11:49.

Jun 8 2020

refactor:CoordinateSystem: Extract methods toward Scapula and create the…
b9fd2d7c524f
·boubat on Jun 8 2020, 18:44.
perf:cellArraysDifference: Set new algorithm that takes advantage of builtin…
6c7ee2e85bec
·boubat on Jun 8 2020, 16:11.
fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to…
29a3fa52703b
·boubat on Jun 8 2020, 16:04.
files: Move all the classes in their @Class folder.
62f58690ff52
·boubat on Jun 8 2020, 16:02.
feat:MusclesContainer: Implement isEmpty() class' method and update other…
7599224428a0
·boubat on Jun 8 2020, 14:38.
refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent…
9ef4a4460815
·boubat on Jun 8 2020, 14:37.

Jun 5 2020

refactor: Update system to use new muscles classes.
57529901bdb2
·boubat on Jun 5 2020, 20:46.
refactor:ShoulderCaseLoader: Split the loadCase method into two.
bfc2bd97ce97
·boubat on Jun 5 2020, 18:06.
refactor:Shoulder:muscles: Update property to new MusclesContainer class.
cdc2cc5bd1d2
·boubat on Jun 5 2020, 17:47.
feat:MusclesContainer:plot: Implement a method that plots segmentation results.
62f82cd4aa84
·boubat on Jun 5 2020, 17:46.
refactor:Muscles: Remove deprecated class Muscles.
5e10ddc4dd02
·boubat on Jun 5 2020, 17:01.
feat:MuscleMeasurer: Implement new class to measure degeneration related values.
001712d94142
·boubat on Jun 5 2020, 16:45.
feat:MusclesContainer: Update and move the slicing and segmenting methods here.
215393eb1cf8
·boubat on Jun 5 2020, 16:43.
feat:Muscle:measure: Implement the method that replaces Muscles.degeneration.
38489099f4c6
·boubat on Jun 5 2020, 16:41.
refactor:MusclesContainer: Change a property type. Add row names to table.
b00418910a93
·boubat on Jun 5 2020, 09:56.

Jun 4 2020

feat: Add classes to replace the current Muscles class
ed6300bff59f
·boubat on Jun 4 2020, 19:13.
doc: Update propagateDataPath function description
013bf5adb5ef
·boubat on Jun 4 2020, 19:13.

Jun 3 2020

fix:paths: Fix errors from the previous commit. Update ShoulderCaseLoader.
5d00832462bc
·boubat on Jun 3 2020, 19:02.
build:ShoulderCase: Give the access to ShoulderCase constructor to…
109a4c7958ec
·boubat on Jun 3 2020, 18:34.

Jun 2 2020

fix:Shoulder: Change shoulder.dataPath not to be set at construction.
8ace928e67ae
·boubat on Jun 2 2020, 19:08.
feat:Shoulder: Add a dataPath property
6c2366ede060
·boubat on Jun 2 2020, 18:54.

May 28 2020

refactor:Muscles: Extract methods from muscles.degeneration dedicated to the…
fd75f40ff87d
·boubat on May 28 2020, 19:06.
fix:Muscles: Fix typos and errors in new degeneration functions
241cdc0e8151
·boubat on May 28 2020, 19:04.
refactor:Muscles:plot: Update files path.
c4835c80d01c
·boubat on May 28 2020, 19:03.
refactor:Muscles: Change property's name
5f5d575e2969
·boubat on May 28 2020, 19:02.

May 27 2020

refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from…
7cb91009bd76
·boubat on May 27 2020, 18:49.
feat:Muscles:plot Implement the plot for this class, displaying the segmented…
8ef31b7c3a59
·boubat on May 27 2020, 16:02.
refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff…
5307bce7a770
·boubat on May 27 2020, 15:13.
refactor:Muscles:newDegeneration: Extract methods that save the results of…
379c8838e5d5
·boubat on May 27 2020, 15:07.
refactor:Muscles:newDegeneration: Extract the call to python commands into a…
4620dde3f905
·boubat on May 27 2020, 13:12.
feat:Muscles:newDegeneration: Add a function to save the slice where it's…
04bab1535231
·boubat on May 27 2020, 12:52.
feat:Muscles: Add a slicedPixelSpacing property.
ebd964b44837
·boubat on May 27 2020, 12:28.
feat:Muscles:newDegeneration: Save the image to be segmented in the case's…
850447626163
·boubat on May 27 2020, 12:27.

May 20 2020

refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration…
c262f90f92fa
·boubat on May 20 2020, 18:17.
refactor:Muscles: Add some properties to prepare the refactoring of Muscles.
4bde30b85802
·boubat on May 20 2020, 18:15.
refactor:DicomVolume: Update and move functions to separate files for the three…
a1e57f22a675
·boubat on May 20 2020, 18:14.

May 13 2020

feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other…
bde234e812e5
·boubat on May 13 2020, 18:04.
fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution…
d06062e4be4b
·boubat on May 13 2020, 18:02.

May 12 2020

feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method
953a835372e7
·boubat on May 12 2020, 17:49.
refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution().
3001f3d3df2e
·boubat on May 12 2020, 17:47.
feat:DicomVolume: Add a method to get the point coordinates given the point…
017725062789
·boubat on May 12 2020, 17:43.

May 8 2020

feat:DicomeVolumeSlicer: Implement the prototype of crop and rotation methods…
eca90fb31dbc
·boubat on May 8 2020, 18:12.

May 5 2020

refactor:DicomVolumeNormaliser: Delete deprecated normalising method
7acd12e09741
·boubat on May 5 2020, 14:58.
perf:Plane:plot: Change the radius argument to be an optional argument
4382a0e51879
·boubat on May 5 2020, 11:42.

May 4 2020

perf:Plane:plot: Update the plot method of Plane to show a circle
a759c3f2483c
·boubat on May 4 2020, 17:10.
feat:Circle: Add a Circle object
b3581e059416
·boubat on May 4 2020, 17:09.
feat:Plane: Implement the plot method for the PLane class
bf41261b06ef
·boubat on May 4 2020, 10:39.
extract:DicomVolume: Extract methods from DicomeVolumeSlicer class to new…
a90c6220da75
·boubat on May 4 2020, 10:38.

Apr 29 2020

refactor:Muscles&DicomeVolumeSlicer: Extract the last methods added to the…
fec0e26ef0bb
·boubat on Apr 29 2020, 18:26.

Apr 28 2020

feat:Muscles: Add functions to get a slice of a dicom volume
00d767138ff5
·boubat on Apr 28 2020, 17:49.
files: Create the @Muscles folder for the Muscles object
036a5f51d147
·boubat on Apr 28 2020, 17:28.
feat:ShoulderCaseLoader:loadCase: Add the root path and the dicom path to the…
af7f9a58f1e8
·boubat on Apr 28 2020, 17:25.

Apr 23 2020

feat:CoordinateSystem.m: Add a new function to express local coordinates in…
e76c804d8331
·boubat on Apr 23 2020, 14:05.
fix:Shoulder.m:plot: Change the glenoid sphere center for explicit attribution
f76b662bc8cb
·boubat on Apr 23 2020, 14:04.

Apr 22 2020

refactor:plotSCase.m: Update the way of getting config file data.
f51c749894ea
·boubat on Apr 22 2020, 14:15.
refactor:plotSCase.m: Adapt the plotSCase.m function to the new ShoulderCase.
ac9ebda2e510
·boubat on Apr 22 2020, 13:57.
refactor:ShoulderCase.m:plot: Change the ShoulderCase.plot method to call the…
33e930c3595c
·boubat on Apr 22 2020, 13:37.
refactor:Shoulder.m:plot: Move the plot method from the ShoulderCase object to…
b22704467228
·boubat on Apr 22 2020, 13:36.

Apr 9 2020

feat: Add the MethodsMonitor abstract class that monitor and programm child…
1208bd216f86
·boubat on Apr 9 2020, 17:45.
feat: Add a function that substract the elements of cell array from another…
ac653395da5b
·boubat on Apr 9 2020, 17:44.
feat: Add a format.string constant property to Timer object.
f3149ac75f22
·boubat on Apr 9 2020, 17:43.

Mar 27 2020

fix: Adapt SCaseIDParser to new version of FileExtractor
3a3dd5b033de
·tag: v1.0.4
·boubat on Mar 27 2020, 18:57.
perf: Assert validity of inputs and output of FileExtractor
7bcac05318f2
·boubat on Mar 27 2020, 18:56.
perf: Change the output of FileExtractor object to directly return the variable…
ec894e061479
·boubat on Mar 27 2020, 18:43.

Mar 25 2020

fix: Change the use of exist() for dir()
81f62652e818
·boubat on Mar 25 2020, 18:00.
fix: Reduce the required number of groove points in scapula CoordinateSystem
a9ac266193d9
·boubat on Mar 25 2020, 17:58.
fix: Orient the glenoid.centerLine toward ML
8fd68c5307ea
·boubat on Mar 25 2020, 17:57.

Mar 23 2020

doc: Update the description of measureSCase arguments and its examples
68a0d790ee5a
·boubat on Mar 23 2020, 15:50.
fix: Re-create the glenoid.walch property and change the auto-measurements…
f522e25284c2
·boubat on Mar 23 2020, 15:49.

Mar 21 2020

fix: Comment out outdated reference to glenoid.walch
7206916ce178
·boubat on Mar 21 2020, 14:44.
fix: Change reference to glenoid.SCase in glenoid.calcDensity
d039ccbc6e2b
·boubat on Mar 21 2020, 14:40.
perf: Add more try/catch in measurements of measureSCase and log the error…
d6695a6ce91a
·boubat on Mar 21 2020, 14:29.
fix: Change the reference to glenoid.SCase for glenoid.scapula.shoulder.SCase…
a00df81283de
·boubat on Mar 21 2020, 14:28.
fix: Change the access of the contructor of Glenoid
d527ccbae642
·boubat on Mar 21 2020, 14:09.
fix: Add a missing 'end' statement in GlenoidManual
7a38bfa38175
·boubat on Mar 21 2020, 14:06.
fix: Correct typo
7b83430b827a
·boubat on Mar 21 2020, 14:01.
refactor: Change the way the other objects handle the new GlenoidAuto/Manual…
64906d21ca8f
·boubat on Mar 21 2020, 13:59.
refactor: Extract one abstract and two manual/auto object out of the Glenoid…
37f7244f5b40
·boubat on Mar 21 2020, 13:46.

Mar 20 2020

fix: Add try/catch in measureSCase measurements to prevent measureSCase from…
c33f0ab9971f
·boubat on Mar 20 2020, 17:49.

Mar 19 2020

feat: Add the current folder and subfolders in MATLAB path at the beginning of…
4b96121eef0f
·boubat on Mar 19 2020, 18:34.
refactor: Change openConfigFile function for ConfigFileExtractor.getVariable…
82e77830d37d
·boubat on Mar 19 2020, 18:33.
fix: Change python path dependencies to be chosen in config file for muscles.
0813f9597cd9
·boubat on Mar 19 2020, 18:00.
doc: Update measurSCase header to describe the new arguments handling
633dfe7369d1
·boubat on Mar 19 2020, 16:19.
refactor: Delete the output of glenoid.measureVersionAndInclination
16833d2f1296
·boubat on Mar 19 2020, 15:41.
refactor: Delete CT2Scapula method, outdated by the CoordinateSystem.express…
5a539868d490
·boubat on Mar 19 2020, 15:40.

Mar 18 2020

fix: Avoid SCase creation error in measureSCase.m
e0e317dc6d1e
·boubat on Mar 18 2020, 19:27.
refactor: Implement the glenoid.morphology method to call the dedicated…
b8602c242c8e
·boubat on Mar 18 2020, 18:33.

Historymaster92a343b4b0d86ae75f2bbac…

Jun 16 2020

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History
master92a343b4b0d86ae75f2bbac…