Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
masterf9e3ea44f5b49f054c8ca0f…

Aug 5 2021

Merge branch 'slicer_tools' into 'master'
f9e3ea44f5b4
·boubat on Aug 5 2021, 10:42.

Aug 4 2021

feat: add classes to create and export Slicer markups
77fc6b09a6ab
·Matthieu Boubat (lbovenus) on Aug 4 2021, 19:24.
Merge branch 'config_modification' into 'master'
1cd277fb4c11
·boubat on Aug 4 2021, 12:35.
feat: add method to change config file parameters
bf47511c5f18
·Matthieu Boubat (lbovenus) on Aug 4 2021, 12:29.
Merge branch 'rotator_cuff_segmentation_config' into 'master'
7685b96f7577
·boubat on Aug 4 2021, 11:26.
feat: add rotator cuff segmentation config
8deefa5baa32
·Matthieu Boubat (lbovenus) on Aug 4 2021, 11:25.

Jul 28 2021

Merge branch 'insertions_ring' into 'master'
8b040d8ab736
·boubat on Jul 28 2021, 16:13.
feat: implement humeral head insertions ring
276023108883
·Matthieu Boubat (lbovenus) on Jul 28 2021, 16:12.
Merge branch 'amira_landmarks_side' into 'master'
f18477207b2f
·boubat on Jul 28 2021, 14:34.
refactor: update methods to use new methods
b5ed50c425c6
·Matthieu Boubat (lbovenus) on Jul 28 2021, 14:31.
refactor: assert the shoulder side of loaded landmarks
cf82c2a99a42
·Matthieu Boubat (lbovenus) on Jul 28 2021, 14:08.
refactor: check an alternative landmarks file
d477c3fa8a0a
·Matthieu Boubat (lbovenus) on Jul 28 2021, 14:08.
feat: extract method to import amira landmarks
07e7631e7b6c
·Matthieu Boubat (lbovenus) on Jul 28 2021, 13:59.

Jul 27 2021

feat: add methods to check landmarks files existence
13bbab2fbe5e
·Matthieu Boubat (lbovenus) on Jul 27 2021, 17:04.
Merge branch 'muscle_insertion_lateralisation' into 'master'
e7ae2c25e263
·boubat on Jul 27 2021, 16:59.

Jul 26 2021

refactor: change lateralisation algoorithm
bd3db96c7391
·Matthieu Boubat (lbovenus) on Jul 26 2021, 18:49.
feat: add method to lateralise muscle insertion
9c5479fd8746
·Matthieu Boubat (lbovenus) on Jul 26 2021, 18:41.
feat: add method to get normalised Vector
80d6f06d5c15
·Matthieu Boubat (lbovenus) on Jul 26 2021, 18:28.
Merge branch 'muscle_insertion_visualisation' into 'master'
cc98f1adc6f8
·boubat on Jul 26 2021, 18:21.
fix: fix scatter plot marker attributes
60778b05cfb6
·boubat on Jul 26 2021, 18:16.
feat: add muscle insertion in 3d visualisation
618e7df2e42e
·Matthieu Boubat (lbovenus) on Jul 26 2021, 17:43.

Jul 23 2021

fix: fix wrong method call
960be8b10aa2
·Matthieu Boubat (lbovenus) on Jul 23 2021, 14:54.

Jul 22 2021

Merge branch 'muscle_insertions_review' into 'master'
0dde3510025e
·boubat on Jul 22 2021, 17:55.
fix: fix the condition of sphere between points
fd76a341210f
·Matthieu Boubat (lbovenus) on Jul 22 2021, 17:52.
fix: remove typo
68adb3a2fd22
·Matthieu Boubat (lbovenus) on Jul 22 2021, 17:40.
refactor: extract methods
c26cc0fd171f
·Matthieu Boubat (lbovenus) on Jul 22 2021, 12:51.

Jul 21 2021

docs: update README with new config file structure
4d98ccd6d02e
·Matthieu Boubat (lbovenus) on Jul 21 2021, 18:20.

Jul 20 2021

refactor: change supraspinatus insertion
a04668cd5e0d
·Matthieu Boubat (lbovenus) on Jul 20 2021, 14:48.
refactor: extract method and update
f2f6d3662947
·Matthieu Boubat (lbovenus) on Jul 20 2021, 14:22.
refactor: simplify muscle subdivision (1,1) (= no subdivision)
ab3dea3de184
·Matthieu Boubat (lbovenus) on Jul 20 2021, 11:02.

Jul 15 2021

refactor: add try/end to special measurements
bc549d7059de
·Matthieu Boubat (lbovenus) on Jul 15 2021, 17:09.
feat: add method to get contour path
bd0a9cbea179
·Matthieu Boubat (lbovenus) on Jul 15 2021, 11:01.

Jul 14 2021

fix: choose same archive as loadCase() method
03f2e11a7a1b
·Matthieu Boubat (lbovenus) on Jul 14 2021, 11:06.

Jul 13 2021

refactor: change char arrays for strings
b06b59f49927
·Matthieu Boubat (lbovenus) on Jul 13 2021, 14:43.

Jul 2 2021

fix: fix varargin array handling
c091bb75b398
·Matthieu Boubat (lbovenus) on Jul 2 2021, 19:33.
feat: add number of muscle subdivisions in config
f0f61b542b79
·Matthieu Boubat (lbovenus) on Jul 2 2021, 12:58.

Jul 1 2021

Merge branch 'rotator_cuff_imbalance' into 'master'
dd9b02b57467
·boubat on Jul 1 2021, 18:45.
feat: add antero-posterior imbalance measurement in measureSecond
cee10e471694
·Matthieu Boubat (lbovenus) on Jul 1 2021, 18:43.
Merge branch 'utils_refactor' into 'master'
7a7436dee58e
·boubat on Jul 1 2021, 17:32.
refactor: replace Timer with tic() and toc()
9235720d3789
·Matthieu Boubat (lbovenus) on Jul 1 2021, 15:47.
fix: skip objects that are not scalar
eb0ef0cb4571
·Matthieu Boubat (lbovenus) on Jul 1 2021, 13:23.
Merge branch 'muscle_contact_point_review' into 'master'
83a2130902b0
·boubat on Jul 1 2021, 12:20.
fix: fix typo in property access
a9b16e9f1f71
·Matthieu Boubat (lbovenus) on Jul 1 2021, 12:13.

Jun 30 2021

fix: fix typo in iterator creation
3e198561271d
·boubat on Jun 30 2021, 18:18.
refactor: update iterator creation
3a1b0c5185e2
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:09.
refactor: prevent default subdivisions from being saved
aa17e16f50ee
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:08.
feat: add default muscle subdivision
5d84dff45ac0
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:07.
refactor: add specific condition handling
115f22a15e05
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:06.
fix: avoid error from non-scalar properties
34eaa0230aa9
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:03.
fix: fix object path in nested properties
dfa2b8679b1b
·Matthieu Boubat (lbovenus) on Jun 30 2021, 18:02.
refactor: set more specific muscle insertions
ef4f372499ab
·Matthieu Boubat (lbovenus) on Jun 30 2021, 13:51.
Merge branch 'humerus_insertions' into 'master'
d32ee1bcc847
·boubat on Jun 30 2021, 13:29.

Jun 29 2021

feat: add segmented insertions in force measurements
6df99684eaec
·Matthieu Boubat (lbovenus) on Jun 29 2021, 15:17.
feat: add method to verbose muscle name
f23bdf0f4130
·Matthieu Boubat (lbovenus) on Jun 29 2021, 15:17.
feat: add muscle insertions in humerus properties
966506e4bb0f
·Matthieu Boubat (lbovenus) on Jun 29 2021, 15:07.

Jun 28 2021

Merge branch 'muscle_clean' into 'master'
8d1aa85f2ffd
·boubat on Jun 28 2021, 17:50.
refactor: remove deprecated function
ccebeccd560a
·Matthieu Boubat (lbovenus) on Jun 28 2021, 17:44.
Merge branch 'feat_muscle_subdivisions' into 'master'
77d59a456131
·boubat on Jun 28 2021, 17:21.
fix: stabilize PCSA over subdivisions
b45679a6b3c9
·Matthieu Boubat (lbovenus) on Jun 28 2021, 17:17.

Jun 24 2021

fix: prevent fully atrophied muscle to raise error
1b58cbda7953
·Matthieu Boubat (lbovenus) on Jun 24 2021, 15:32.
fix: set correct iterator range
282b38575986
·boubat on Jun 24 2021, 14:06.

Jun 23 2021

fix: fix misdivisions of masks including the 0 angle
a262bb9dd300
·boubat on Jun 23 2021, 20:04.
fix: change iterator to follow iterated array
d56230c45d9b
·boubat on Jun 23 2021, 19:56.
fix: change method to work with 1 point array
586913c7c5b5
·boubat on Jun 23 2021, 19:43.

Jun 22 2021

refactor: change property access
12dd8059c31e
·boubat on Jun 22 2021, 19:29.
refactor: make method compliant with subdivisions
e8cc33c17c52
·Matthieu Boubat (lbovenus) on Jun 22 2021, 19:03.
refactor: add rotator cuff force resultant for every subdivision
61d7e7c30acd
·Matthieu Boubat (lbovenus) on Jun 22 2021, 18:54.
refactor: add force vector, taking the degeneration into account, for every…
d2f29cae7c44
·Matthieu Boubat (lbovenus) on Jun 22 2021, 18:33.
refactor: add force application points for every subdivision
c3e0569ea397
·Matthieu Boubat (lbovenus) on Jun 22 2021, 18:26.
refactor: make muscle measurements done for every subdivision
86c6944cab21
·Matthieu Boubat (lbovenus) on Jun 22 2021, 18:21.
refactor: make centroids have the same index as subdivisions
e90ebf090c74
·Matthieu Boubat (lbovenus) on Jun 22 2021, 18:12.

Jun 18 2021

refactor: update method to use muscle subdivisions
897e889584bc
·boubat on Jun 18 2021, 19:35.
refactor: update method to use muscle subdivisions
ba3bb649febc
·boubat on Jun 18 2021, 19:03.
fix: change method used
2e51341bed57
·boubat on Jun 18 2021, 19:02.
feat: implement Muscle subdivision
6f9a8065808b
·boubat on Jun 18 2021, 18:41.
fix: make element consistent with matlab array indexing
455ac22de2b1
·boubat on Jun 18 2021, 18:39.
feat: implement slice point finder
e74a03f54313
·boubat on Jun 18 2021, 18:28.
refactor: increase function scope
c59fda2034c3
·boubat on Jun 18 2021, 17:46.
Merge branch 'feat_muscle_subdivision' into 'master'
2422a095c9ee
·boubat on Jun 18 2021, 15:35.
feat: add a stacked version of subdivisions
08f73692c20f
·Matthieu Boubat (lbovenus) on Jun 18 2021, 15:27.
refactor: change subdivisions boundaries creation
b9676107c82a
·Matthieu Boubat (lbovenus) on Jun 18 2021, 15:26.
feat: implement mask subdivision
63c45a478235
·Matthieu Boubat (lbovenus) on Jun 18 2021, 14:46.
refactor: adapt property name to property utilisation
3228e812a765
·Matthieu Boubat (lbovenus) on Jun 18 2021, 14:43.
feat: add radial division mask method
63277cb396d8
·Matthieu Boubat (lbovenus) on Jun 18 2021, 10:59.
refactor: simplify method name
f26d0d8bd1a8
·Matthieu Boubat (lbovenus) on Jun 18 2021, 10:52.
refactor: add grid properties and extract method to measure them
05c64083ab7b
·Matthieu Boubat (lbovenus) on Jun 18 2021, 10:50.

Jun 17 2021

feat: add angular division mask method
622c8d0ee4c1
·Matthieu Boubat (lbovenus) on Jun 17 2021, 19:32.
feat: implement MaskSubdivider construction
ea0fec6a5204
·Matthieu Boubat (lbovenus) on Jun 17 2021, 19:31.
Merge branch 'refactor_muscle_measurement' into 'master'
57a091c63bf8
·tag: v2.0.0
·boubat on Jun 17 2021, 17:17.
refactor: decouple MuscleMeasurer from Muscle
7a40eb3227b9
·Matthieu Boubat (lbovenus) on Jun 17 2021, 16:42.
refactor: extract method
858f43d3dce6
·Matthieu Boubat (lbovenus) on Jun 17 2021, 16:41.

Jun 16 2021

Merge branch 'feat_humerus_3d_index' into 'master'
6c0544dfd86c
·boubat on Jun 16 2021, 16:44.
feat: add measurement in measureSecond()
129469e1727e
·Matthieu Boubat (lbovenus) on Jun 16 2021, 16:04.
Merge branch 'refactor_glenoid_data_loading' into 'master'
5f4ceb217c3a
·boubat on Jun 16 2021, 15:17.
refactor: extract methods to load Glenoid data
9327d4667441
·Matthieu Boubat (lbovenus) on Jun 16 2021, 15:11.

Jun 11 2021

feat: add lsit of cases to measure in default config setup
e38e71843c0e
·Matthieu Boubat (lbovenus) on Jun 11 2021, 01:22.
feat: add logging in special measurements
f64b2479e904
·Matthieu Boubat (lbovenus) on Jun 11 2021, 01:21.
fix: remove duplicate implementation of methods
98f0f43e1169
·Matthieu Boubat (lbovenus) on Jun 11 2021, 01:16.
refactor: extract method to save all SCases in one file
0da0b66d0343
·Matthieu Boubat (lbovenus) on Jun 11 2021, 00:49.
fix: add properties that were wrongly removed
e50767eeed13
·Matthieu Boubat (lbovenus) on Jun 11 2021, 00:06.

Historymasterf9e3ea44f5b49f054c8ca0f…

Aug 5 2021

Aug 4 2021

Jul 28 2021

Jul 27 2021

Jul 26 2021

Jul 23 2021

Jul 22 2021

Jul 21 2021

Jul 20 2021

Jul 15 2021

Jul 14 2021

Jul 13 2021

Jul 2 2021

Jul 1 2021

Jun 30 2021

Jun 29 2021

Jun 28 2021

Jun 24 2021

Jun 23 2021

Jun 22 2021

Jun 18 2021

Jun 17 2021

Jun 16 2021

Jun 11 2021

History
masterf9e3ea44f5b49f054c8ca0f…