Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

R8218/ShoulderCase
masterb174c68a210346af9a31436…

Jun 4 2021

feat: add emptiness check for scapula and shoulder
b174c68a2103
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
fix: rename abstract method to abide by the new implementation
35de437afb0f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename measure() to measureFirst()
a47b7a62a073
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: organise Glenoid methods
18b77e286593
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method
78d17b84ff5c
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method, output arguments, create morphology and measure methods
942e6d6ce350
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: write object methods in separate files
d0cc46351ea7
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: simplify objects constructor
0fe4702f8808
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: remove the need for two child classes and update utilisation
2c2b3728cbfc
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: change object name and move it to utils
f1573e653332
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat: add left and right shoulders as SCase properties
bf44e1088b42
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.

Jun 1 2021

refactor: Change concatenation for table outer join.
a69e46bd180b
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Export two different rows for auto/manual SCase data.
1cb19cfdc519
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Remove extra '_' in some variable names.
29871e28c498
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Improve infinite recursion loop safeguard to any level of nested…
a3d392569110
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Remove typo in docstring.
91285749c26b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Change export function name and implementation.
6fe191783718
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Add docstring and update comments.
c8a2431e9c9b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Add recursion and arguments parser.
a34105a3c73b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Finish implementation of objects tabulation function.
3390335c7340
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Prevent forbiden table column name starting with '_'.
5287912fb246
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat:WIP Add functions to automatically tabulate properties of any given object.
e606f6705785
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.

May 20 2021

fix: Fix char/string bad mixing.
40a669da7e26
·Matthieu Boubat (lbovenus) on May 20 2021, 16:52.
refactor: Remove deprecated classes and move general purpose classes to the…
71604e1d9392
·boubat on May 20 2021, 16:11.
refactor: Update config extraction method across system.
c99e6574cba5
·boubat on May 20 2021, 15:28.
refactor: Uncomment out the filtering of dicom volume.
5f7d12c9d877
·Matthieu Boubat (lbovenus) on May 20 2021, 13:07.

May 19 2021

feat: Allow to load multiple SCases from a list of SCaseID.
824eabc2dc38
·Matthieu Boubat (lbovenus) on May 19 2021, 14:15.
refactor: Adapt pixel coordinates transformation for left side shoulder.
47e03f89908c
·Matthieu Boubat (lbovenus) on May 19 2021, 14:00.

May 7 2021

refactor: Update methods to take into account new file names containing…
c972dfcc3ad1
·Matthieu Boubat (lbovenus) on May 7 2021, 13:12.

May 5 2021

fix: Fix wrong methods and properties names.
35a68cd60da1
·Matthieu Boubat (lbovenus) on May 5 2021, 18:29.
refactor: Change slice size and position.
1e234606ba89
·Matthieu Boubat (lbovenus) on May 5 2021, 18:09.
refactor: Make auto scapula data loading prioritize current shoulder side.
64c30663f9ab
·boubat on May 5 2021, 17:46.
feat: Add methods that bundle several submethods.
460092f903be
·boubat on May 5 2021, 17:44.
refactor: Extract amira/slicer data loading methods from general load method.
fca61af81212
·boubat on May 5 2021, 17:05.
refactor: Change char arrays for strings.
518851eaf0c0
·boubat on May 5 2021, 17:04.
refactor: Change legend location of rotator cuff segmentations 2D plot.
8ca3dd3334e9
·boubat on May 5 2021, 16:52.
feat: Add Teres Minor humeral head insertion and force influence on antero…
46649b7ec7f4
·boubat on May 5 2021, 16:51.

Apr 28 2021

feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

feat: Add method to export humeral head fitted sphere to .ply file.
b523d4a048f5
·boubat on Apr 21 2021, 16:17.
feat: Add method to export a Sphere to .ply file thanks to BinarySphere.
ec80aabdeaff
·boubat on Apr 21 2021, 16:16.
feat: Add method to find new 3DSlicer folder of SCase.
6c84779ab0bc
·boubat on Apr 21 2021, 16:15.
feat: Add method to load humerus landmakrs from 3DSlicer markups files.
16f1b22821e2
·boubat on Apr 21 2021, 16:14.
refactor: Remove disposable argument and fix char/string concatenation.
e5cc35f4bed9
·boubat on Apr 21 2021, 14:19.
refactor: Remove deprecated property.
90907cc260b3
·boubat on Apr 21 2021, 14:17.

Apr 16 2021

refactor: Change shoulder.muscles for shoulder.rotatorCuff.
47c2d59842b9
·boubat on Apr 16 2021, 16:17.
fix: Fix char/string issue.
fb2909401cda
·boubat on Apr 16 2021, 16:15.
refactor: Divide measure method into three.
afa310747b4f
·boubat on Apr 16 2021, 15:41.
feat: Add measurement of rotator cuff antero-posterior imbalance angle.
bab625d091e5
·boubat on Apr 16 2021, 15:24.
refactor: Make plot method ShoulderCasePlotter compliant.
eb0fc6f6f92a
·boubat on Apr 16 2021, 14:23.
fix: Add missing coefficient.
bed4780af6f2
·boubat on Apr 16 2021, 12:25.
feat: Add muscle measurement of insertion and force vector.
02ce2d5800e0
·boubat on Apr 16 2021, 12:24.
feat: Add Humerus plot method.
5eff374d8477
·boubat on Apr 16 2021, 10:43.
feat: Add plot methods to RotatorCuff.
04648c7bb765
·boubat on Apr 16 2021, 10:18.

Apr 15 2021

fix: Change variable names.
1356f5320c27
·Matthieu Boubat (lbovenus) on Apr 15 2021, 19:39.
feat: Implement RotatorCuff object and add it to Shoulder.
490ef61530c7
·boubat on Apr 15 2021, 19:22.
refactor: Change Muscle construction and add properties summary.
158ebe27c403
·boubat on Apr 15 2021, 19:19.
fix: Change folder name.
0cfd68911b42
·boubat on Apr 15 2021, 19:18.
refactor: Change char array for string.
e3ee0285f235
·boubat on Apr 15 2021, 19:17.
refactor: Change data path handling in Muscles related objects.
0b92d3ff947e
·boubat on Apr 15 2021, 18:09.
refactor: Change the accessibility of objects' properties refering to other…
6b09b54993f4
·boubat on Apr 15 2021, 16:30.
refactor: Make the Shoulder objects and children simpler and remove the need…
b6e0aee02633
·boubat on Apr 15 2021, 16:02.
refactor: Change data paths from being properties to method which remove the…
6b6233bb1687
·boubat on Apr 15 2021, 16:00.
refactor: Change Sphere construction to be intialisable with center and radius.
18386f62dc97
·boubat on Apr 15 2021, 13:00.
feat: Add Sphere polar tangent point finding method.
ff30e63892ee
·boubat on Apr 15 2021, 12:59.
fix: Fix error in minus() when using an array as input.
4f23238a0e74
·boubat on Apr 15 2021, 12:57.

Apr 14 2021

refactor: Change muscle centroid and contour methods ownership from…
1f6f1a05884b
·boubat on Apr 14 2021, 19:12.
feat: Add three features to Vector.
8672dc70095e
·boubat on Apr 14 2021, 18:36.
Merge branch 'muscles_centroid_plot' into 'master'
fb70e1933436
·boubat on Apr 14 2021, 17:31.
feat: Add rotator cuff muscles contour and centroid 3D plots.
d88534adf210
·boubat on Apr 14 2021, 17:28.
feat: Add the slice's pixel coordinates export.
3cb9b325756b
·Matthieu Boubat (lbovenus) on Apr 14 2021, 16:42.

Apr 13 2021

feat: Add methods to export the whole SCases data into a table and save it in a…
597bb3fcfc31
·Pezhman Eghbalishamsabadi / boubat on Apr 13 2021, 13:53.

Apr 8 2021

fix: Remove typos.
760312dc35f9
·boubat on Apr 8 2021, 19:17.
feat: Add 3D humeral subluxation index measurement.
1145767ab72d
·boubat on Apr 8 2021, 18:19.
feat: Add glenoid BETA angle measurement.
6f25c23e0c4e
·boubat on Apr 8 2021, 17:23.
feat: Add three new features to Vector.
a52c52ee0465
·boubat on Apr 8 2021, 17:13.
feat: Add glenoid rim inclination measurement.
a03fb9943223
·boubat on Apr 8 2021, 16:05.
feat: Add glenoid retroversion measurement.
9341c9dbeba3
·boubat on Apr 8 2021, 15:31.
feat: Add three features to the Vector class.
01f18b8b1139
·boubat on Apr 8 2021, 14:07.
feat: Add the measure of glenoid infero superior line.
d7e99d4c0d68
·boubat on Apr 8 2021, 13:17.
feat: Add the measure of glenoid postero anterior line.
71a2298f35d1
·boubat on Apr 8 2021, 13:05.
refactor: Modify Friedman's line to be a Vector instance.
47bcd381205b
·boubat on Apr 8 2021, 12:10.
feat: Add a basic Vector class.
20208d0985c4
·boubat on Apr 8 2021, 11:53.

Apr 1 2021

feat: Add functions to measure muscles centroid and contour coordinates in…
56fd32646096
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:55.
feat: Add two functions to read muscle related segmentation mask and slice…
9fe70821ddb6
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:54.
refactor: Add missing pixel coordinates save.
23f49df7c6a9
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:53.
feat: Finish slice pixel coordinates extraction implementation.
cd7e29c50566
·Matthieu Boubat (lbovenus) on Apr 1 2021, 14:43.
feat:WIP Add slice's pixel coordinates export.
d58ec00b5bac
·boubat on Apr 1 2021, 12:38.

Mar 23 2021

feat: Add a method to find the extreme points of the glenoid rim according to…
792eb24bde0e
·boubat on Mar 23 2021, 16:06.
feat: Add methods to find the rim points of glenoids.
b001c7a73902
·boubat on Mar 23 2021, 16:02.

Mar 22 2021

feat: Implement the measure of the Friedman's scapular line.
1b7c0b38b029
·boubat on Mar 22 2021, 16:06.

Feb 16 2021

refactor: Remove anonymisation code.
b04bf8ae5867
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:43.
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell…
079b06c8538d
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:20.

Jan 12 2021

feat: Add the anonymisation of all the files containing the IPP in the case…
c4f2d93b1eb0
·Matthieu Boubat (lbovenus) on Jan 12 2021, 15:24.

Jan 11 2021

refactor: Change Logger class last lines to show stop time.
8ac49aeeca7c
·Matthieu Boubat (lbovenus) on Jan 11 2021, 12:40.

Dec 11 2020

refactor: Change properties order in getProperties() method.
62cde38bf596
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:23.
refactor: Update ShoulderCaseAnonymiser.
5d659a6abe89
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:28.
feat: Fully implement ShoulderCaseAnonymiser.
20bc822d890c
·boubat on Dec 11 2020, 15:01.

Dec 10 2020

refactor: Allow SCase parser and loader to use string besides char array.
384fdd222785
·boubat on Dec 10 2020, 19:19.

R8218/ShoulderCasemasterb174c68a210346af9a31436…

Jun 4 2021

Jun 1 2021

May 20 2021

May 19 2021

May 7 2021

May 5 2021

Apr 28 2021

Apr 23 2021

Apr 21 2021

Apr 16 2021

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Apr 13 2021

Apr 8 2021

Apr 1 2021

Mar 23 2021

Mar 22 2021

Feb 16 2021

Jan 12 2021

Jan 11 2021

Dec 11 2020

Dec 10 2020

R8218/ShoulderCase
masterb174c68a210346af9a31436…