Diffusion akantu (bugfixes/installation_documentation) History

History
bugfixes/installation_d…727f18940ec2484826f3c1e…

Mar 15 2020

some changes to make PBC work again in sequential: to review
727f18940ec2
·anciaux on Mar 15 2020, 09:55.

Mar 13 2020

correct a memory fault problem with the pbc
1ef067ca8326
·anciaux on Mar 13 2020, 08:35.

Mar 11 2020

use new iterators on types
66af74b287b4
·anciaux on Mar 11 2020, 00:09.

Mar 9 2020

set tag upper bound based in MPI_COMM_WORLD
210089c6948a
·anciaux on Mar 9 2020, 17:22.

Mar 6 2020

extend communicator creation in akantu
3e99190b3c2f
·anciaux on Mar 6 2020, 18:20.
Merge commit '4c6551ee91289c5a9b4318582ef7780324c3170e' into HEAD
62927968802a
·anciaux on Mar 6 2020, 13:00.

Feb 18 2020

Correcting compilation problem
488760c3e3f3
·richart on Feb 18 2020, 16:46.
Example of using python as boundary condition
28993b463c33
·richart on Feb 18 2020, 15:02.
Adding a possibility to insert cohesive element only in some
c67b978cb04e
·richart on Feb 18 2020, 13:02.

Jan 24 2020

Bug fix in pythonpath
9929d0a08e7f
·richart on Jan 24 2020, 16:39.

Jan 23 2020

Correcting install directory for old cmake versions
b23200851fdc
·richart on Jan 23 2020, 18:19.
Installing python binding and akantu-iterators properly
667ed59814ab
·richart on Jan 23 2020, 18:07.

Jan 22 2020

improving the install process
be8e3f9d35f2
·richart on Jan 22 2020, 18:29.
Merge branch 'master' into 'master'
4c6551ee9128
·richart on Jan 22 2020, 15:02.
fix compilation error for c++17 standard
4995de870e93
·anciaux on Jan 22 2020, 14:50.

Jan 15 2020

Actually running the examples as tests
84127a482549
·richart on Jan 15 2020, 18:06.
make the new_material a bit faster
547777110e55
·richart on Jan 15 2020, 13:26.
factorizing scatter/gather from dof_synchronizer to synchronizer_impl
89c853c10096
·richart on Jan 15 2020, 13:24.

Jan 10 2020

adding detection of the mpiseq library
60b28fcdab22
·richart on Jan 10 2020, 13:27.
tuple concat trick
b6bcc70eec56
·richart on Jan 10 2020, 13:19.

Dec 20 2019

Seting policy for the <package>_ROOT variable in the environment
6d890200f749
·richart on Dec 20 2019, 14:22.
Wrongly protected compilation
f600d5b63508
·richart on Dec 20 2019, 14:14.

Dec 18 2019

Bug fix in the export of the target akantu
58bf31d34709
·richart on Dec 18 2019, 14:45.

Dec 13 2019

mpi skip mpicxx
551d547afddd
·richart on Dec 13 2019, 15:51.
extanding SparseMatrix and DOFManager interface in python
ac4f37242023
·richart on Dec 13 2019, 15:33.
Make the test work with older version of gtest
36ba3a35a3dc
·richart on Dec 13 2019, 14:45.
cleaning lincences and clang-formating
3ad548c8dbb5
·richart on Dec 13 2019, 11:26.
Merge commit '5e1ea8c938d8b63d462d21c8ea8292f3fdeaeebf'
e64ab77154c7
·richart on Dec 13 2019, 10:46.
A bit to aggressive with the clang-tidy
5e1ea8c938d8
·richart on Dec 13 2019, 10:45.

Dec 12 2019

Merge commit 'f8bcabd419ba24966eb8679e9610897dca660db1'
14731a9413a1
·richart on Dec 12 2019, 19:20.
Added named_zip
f8bcabd419ba
·richart on Dec 12 2019, 19:16.
tidied and formated version
bd71d08c3d98
·richart on Dec 12 2019, 15:38.
some cleaning to many class in the same file
596b60c4bdf3
·richart on Dec 12 2019, 13:57.

Dec 11 2019

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
1e38564b9582
·richart on Dec 11 2019, 18:37.
The fix for clang breaks gcc
8eadccc15c0a
·richart on Dec 11 2019, 18:36.
fixed warning [-Wempty-body] in Mesh::read
5461568ecf20
·frerot on Dec 11 2019, 17:35.
bug fix to compile on clang
f553aa3c8bf8
·richart on Dec 11 2019, 15:41.
Merge branch 'master' of gitlab.com:akantu/akantu
c4f89da9ae78
·richart on Dec 11 2019, 15:30.
Merge commit '0b3ffcd1a0d6eb6b458c72f62f21cd1400f64066'
3a7f4d5d5151
·richart on Dec 11 2019, 15:27.

Dec 10 2019

adding support for non gnu compilers
0b3ffcd1a0d6
·richart on Dec 10 2019, 21:23.
Adding named_tuples and string_literal
7ca19f1effd2
·richart on Dec 10 2019, 21:03.
Correcting namespace + warnings
480f4c7eee34
·richart on Dec 10 2019, 21:02.

Dec 9 2019

trying to accelerate the ci
24c0dfa18072
·richart on Dec 9 2019, 17:06.
improving ci
14042a61b3ad
·richart on Dec 9 2019, 16:59.
Add .gitlab-ci.yml
a07873cdbd98
·richart on Dec 9 2019, 16:51.
small improvements in ci
dcda0b809401
·richart on Dec 9 2019, 16:38.
inceasing timeouts
66e3133c8270
·richart on Dec 9 2019, 16:21.
cleaning a bit the repo
8a2af02b08a5
·richart on Dec 9 2019, 16:11.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
63499ac0083d
·richart on Dec 9 2019, 15:51.
Merge commit '05b77d3f6ef7d01e805b865ade26ac3acec3d668'
071c9fee244f
·richart on Dec 9 2019, 15:50.
bug fix in the filter iterator
05b77d3f6ef7
·richart on Dec 9 2019, 15:08.
Solving the gtest download failing the second time
ce29a60dc324
·richart on Dec 9 2019, 15:07.
linting
e3494c51066d
·richart on Dec 9 2019, 14:43.
changing the way to do filter adaptor
f9b8db2f4c06
·richart on Dec 9 2019, 11:27.
correcting the tests
e4fb2fa229fe
·richart on Dec 9 2019, 11:15.
flags to specify when akantu runs in docker
c70e24267884
·richart on Dec 9 2019, 10:35.

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
ecd4b6b18e86
·richart on Dec 6 2019, 17:00.
cleaning the readme
1f0ee966f6ce
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
a9fc7dd91ac1
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
8ffa4a46e04d
·richart on Dec 5 2019, 18:26.
style typos in junit
f685f876946c
·richart on Dec 5 2019, 18:05.
typo in reports
25386b2b650a
·richart on Dec 5 2019, 18:01.
working on the test reports
44bd0c9faa1b
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
8c5c7fca49a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
55f9df1179ec
·richart on Dec 5 2019, 17:20.
trying to figure out caches
7c47d181b50b
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
3e3b671f4ed1
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
306e1ccd2514
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
e971543af66a
·richart on Dec 5 2019, 14:45.
adding gitlab ci
dcd48d6203f6
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
119e53b27123
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
99248f118661
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
29c9bb06c2ba
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
6af7c64831a5
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
eb4a47db35a1
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
2b0e87f15c58
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
b483b2b1a05e
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
04b3801ffee5
·richart on Dec 4 2019, 16:58.
adding method in model python interface
493c4b60ecec
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
2848d379ed8a
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
f1a8a0161d49
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
701e628670f7
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
cf90f60abdde
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
f6a5d382c9cb
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
2385e94fa9ac
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
b41ec1bdbff4
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
4ae8393e9f47
·richart on Nov 28 2019, 12:24.
cleaning when failling
4b284882e28e
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
0c8304556d60
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
f501efc5a1a2
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
59faf9244eb0
·richart on Nov 27 2019, 15:44.
correcting some tests
5aafb992abf7
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
125fb50f0497
·richart on Nov 27 2019, 15:38.
Updating cmake
970ac3e26845
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e6f63992680a
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
f570859554d8
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
fda93b20c0c3
·richart on Nov 27 2019, 14:23.
moved an output file
522b0434bcf8
·richart on Nov 27 2019, 14:17.
minor corrections
f27246f38612
·richart on Nov 27 2019, 14:10.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
1edb8bd9845a
·richart on Nov 27 2019, 14:06.

Historybugfixes/installation_d…727f18940ec2484826f3c1e…

Mar 15 2020

Mar 13 2020

Mar 11 2020

Mar 9 2020

Mar 6 2020

Feb 18 2020

Jan 24 2020

Jan 23 2020

Jan 22 2020

Jan 15 2020

Jan 10 2020

Dec 20 2019

Dec 18 2019

Dec 13 2019

Dec 12 2019

Dec 11 2019

Dec 10 2019

Dec 9 2019

Dec 6 2019

Dec 5 2019

Dec 4 2019

Dec 3 2019

Dec 2 2019

Nov 29 2019

Nov 28 2019

Nov 27 2019

History
bugfixes/installation_d…727f18940ec2484826f3c1e…