Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…3f594cbb3680dc07f5e409e…

Dec 9 2019

flags to specify when akantu runs in docker
3f594cbb3680
·richart on Dec 9 2019, 10:35.

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
f142b17e9176
·richart on Dec 6 2019, 17:00.
cleaning the readme
09b534cfadc6
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
2283629c888f
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
418f0cdcdd93
·richart on Dec 5 2019, 18:26.
style typos in junit
b578a0cb4fe7
·richart on Dec 5 2019, 18:05.
typo in reports
5d475fc77c44
·richart on Dec 5 2019, 18:01.
working on the test reports
ecfeb6b962e3
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
5c6b97f4c8a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
f5b079a3431a
·richart on Dec 5 2019, 17:20.
trying to figure out caches
e853faf42385
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
fd67091319e6
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
09f52dea9329
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
38b6e7a39aff
·richart on Dec 5 2019, 14:45.
adding gitlab ci
a68698997ea2
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
8c62f206d530
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
ee95d25f3f67
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
d5726d36cee2
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
fccb500bf91a
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
0e809a7ec2c3
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
a8efc4cf46fc
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
db48d22d8064
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
fb6207862153
·richart on Dec 4 2019, 16:58.
adding method in model python interface
356f1dac21fd
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
5ac36c978a89
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
04340e532b9c
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
092b290520c2
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
74ea992b45aa
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
549557bb86a5
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
9bdc4bbe7ab0
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
87f273ee8dfd
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
1f21882a7371
·richart on Nov 28 2019, 12:24.
cleaning when failling
8ec02b2fbcb9
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
dcdb1495214c
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
a7b944d6c817
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
525799376c2e
·richart on Nov 27 2019, 15:44.
correcting some tests
c4cc4b4c47dd
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
2d7706576326
·richart on Nov 27 2019, 15:38.
Updating cmake
3b5ad8bc6ce8
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e0974cf6bcc5
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
ba6837e25b9b
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
657da1256e23
·richart on Nov 27 2019, 14:23.
moved an output file
9597c2542bdf
·richart on Nov 27 2019, 14:17.
minor corrections
c8376fd17f15
·richart on Nov 27 2019, 14:10.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
6fc95097d887
·richart on Nov 27 2019, 14:06.

Nov 11 2019

Adding docker images
a3683ff5a8e8
·richart on Nov 11 2019, 16:47.
Cleaning debug couts
136fdff461b8
·richart on Nov 11 2019, 16:28.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
d5d5d6d0ef46
·richart on Nov 11 2019, 16:05.
Cleaning unused parameters
295fdd9828a3
·richart on Nov 11 2019, 16:03.
Adding finite deformation materials to patch tests
520fbdda217e
·richart on Nov 11 2019, 16:03.
Adding finite deformation test
4985f7e03bfc
·richart on Nov 11 2019, 16:02.
aka_iterators simplification
5d8a10395816
·richart on Nov 11 2019, 16:01.

Nov 7 2019

adding the meshdatamaterialselector handling
1679e030bb0f
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
c4af0da6117d
·anciaux on Nov 7 2019, 22:16.
Change default to simplify integration
dc4c38ffa3dd
·richart on Nov 7 2019, 17:28.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
1d436d1e0a06
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
18549d2da848
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
f4a623ac3799
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
33b2a21d75fa
·anciaux on Nov 6 2019, 14:40.
Adding more missing files
7a6ed39f0500
·richart on Nov 6 2019, 14:33.
Adding missing file
85ac96c4376b
·richart on Nov 6 2019, 14:29.

Nov 1 2019

policy CMP0077
f4dc9f79613b
·richart on Nov 1 2019, 11:17.
Including akantu_iterators as a sub project
78e134e83f4d
·richart on Nov 1 2019, 11:17.

Oct 30 2019

modify gitignore
8c9a9413ebc1
·richart on Oct 30 2019, 16:36.
Add 'third-party/akantu_iterators/' from commit…
ad16c438b134
·richart on Oct 30 2019, 16:33.
cleaning repo to move to sub repo
5cff0fa4bf8f
·richart on Oct 30 2019, 16:32.
Bug fix for cmake > 3.11
e3715c23639b
·richart on Oct 30 2019, 16:15.
Minor change to limit the number of cores for the tests
56255d81fade
·richart on Oct 30 2019, 16:14.

Oct 28 2019

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f3d662810a7
·richart on Oct 28 2019, 21:26.
Make akantu compile again on ubuntu xenial
67bc28894cfb
·richart on Oct 28 2019, 21:24.

Oct 24 2019

Activating tests
7f23c307f1b4
·richart on Oct 24 2019, 00:06.

Oct 23 2019

adding linters
13d68d30eedc
·richart on Oct 23 2019, 23:59.
moving ci files
e11edcd7e66d
·richart on Oct 23 2019, 23:52.
Adding jenkinsfile
26ce4be418ac
·richart on Oct 23 2019, 23:27.
Add 'test/ci/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'
26c5b9e06429
·richart on Oct 23 2019, 23:20.
initial commit
0d5687c171e7
·richart on Oct 23 2019, 22:49.

Oct 10 2019

fix bug on the group manager python interface
98e31aa37f35
·anciaux on Oct 10 2019, 16:27.

Oct 4 2019

onElementAdded only for elements of the correct dimension
5dcbd68a7b1a
·richart on Oct 4 2019, 17:09.
Moving the flipFacet call to the mesh facet creation code
dd086a28369f
·richart on Oct 4 2019, 16:50.
minor enhancements
d95b4e96bb27
·richart on Oct 4 2019, 15:59.
adding info to mesh events
ff09fbb08786
·richart on Oct 4 2019, 15:58.
Tangent matrix re-computation a bit more clever
afa9cc913c79
·richart on Oct 4 2019, 15:57.

Oct 1 2019

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
7d424091fb1d
·anciaux on Oct 1 2019, 17:57.

Sep 27 2019

dirty hack to allow to dump a numpy array
a7432c4bab43
·anciaux on Sep 27 2019, 21:49.
saving the test for large rotations
442a2f57fe23
·anciaux on Sep 27 2019, 21:46.
temporary fix to pass a numpy to be dumped
baac59a38a62
·anciaux on Sep 27 2019, 21:45.
adding a adddumpfieldexternal
aaddfc6e06ae
·anciaux on Sep 27 2019, 14:57.

Sep 24 2019

adding the example on finite rotation in dynamics
dcc281330a72
·anciaux on Sep 24 2019, 22:17.
Add 'test/ci/scripts/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'
0ef5d87d9034
·richart on Sep 24 2019, 11:13.
splitting repositories
b6a4af4f0f62
·richart on Sep 24 2019, 11:13.
arclinting arclint.py
e20109b241d5
·richart on Sep 24 2019, 11:09.
cleaning usless files
5d294161d2fc
·richart on Sep 24 2019, 11:02.
preparation to split hbm scripts in a different project
aaace74d37ac
·richart on Sep 24 2019, 10:56.
preparation to split hbm scripts in a different project
9b0b8a6b22b2
·richart on Sep 24 2019, 10:56.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
f000ed9c0072
·richart on Sep 24 2019, 10:46.

Sep 23 2019

added parser for junit in harbormaster ci scripts
07f320d9a304
·frerot on Sep 23 2019, 15:45.
added parser for junit in harbormaster ci scripts
e28fc6cfa113
·frerot on Sep 23 2019, 15:45.

Sep 17 2019

bug in the interface
c59021d18d8e
·richart on Sep 17 2019, 17:03.
Bug fix in exclusiveScan in sequential
60e435467a35
·richart on Sep 17 2019, 13:09.

Sep 4 2019

cleaning the code
863d3f407e40
·richart on Sep 4 2019, 17:41.

Historyfeatures/changes-to…3f594cbb3680dc07f5e409e…

Dec 9 2019

Dec 6 2019

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Dec 3 2019

Dec 2 2019

Nov 29 2019

Nov 28 2019

Nov 27 2019

Nov 11 2019

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Oct 30 2019

Oct 28 2019

Oct 24 2019

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Oct 10 2019

Oct 4 2019

Oct 1 2019

Sep 27 2019

Sep 24 2019

Sep 23 2019

Sep 17 2019

Sep 4 2019

History
features/changes-to…3f594cbb3680dc07f5e409e…