Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…4f7245f27871910d6540a93…

Apr 28 2022

Merge branch 'master' into bugfixes/Unexpected-behaviour-in-energy-computation…
4f7245f27871
·richart on Apr 28 2022, 12:45.
Merge branch 'bugfixes/detect_mixed_distributed_initialization' into 'master'
8185a160038c
·richart on Apr 28 2022, 09:55.
Apply 1 suggestion(s) to 1 file(s)
96dbd1c1c33c
·branch: bugfixes/detect_mixed_distributed_initialization
·richart / phimuell on Apr 28 2022, 07:20.

Apr 27 2022

Merge branch 'bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a…
392f7c3dd293
·richart on Apr 27 2022, 16:12.
Fixed a bug.
b64239f821f0
·Philip Mueller, HS on Apr 27 2022, 10:13.
Apply 1 suggestion(s) to 1 file(s)
570532b271ab
·richart / phimuell on Apr 27 2022, 10:06.
Applied more of Nicolas' suggestions.
3db0cf5502c7
·Philip Mueller, HS on Apr 27 2022, 09:59.
Apply 1 suggestion(s) to 1 file(s)
78946eebbd37
·richart / phimuell on Apr 27 2022, 09:46.
Addessed several of Nicolas' comments on GitLab.
678ec54b220c
·Philip Mueller, HS on Apr 27 2022, 09:03.
Apply 1 suggestion(s) to 1 file(s)
ab8a70eff592
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
cc6ad0f52582
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
a015367b0b7c
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
8c8f962ac1c3
·richart / phimuell on Apr 27 2022, 07:57.
Apply 1 suggestion(s) to 1 file(s)
73f4016ec514
·richart / phimuell on Apr 27 2022, 07:56.

Apr 26 2022

Adding the default argument to `setIntegrationScheme`
489f68024a53
·branch: bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a-change-to-setintegrationscheme
·richart on Apr 26 2022, 22:01.

Apr 8 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
af00844e74fe
·anciaux on Apr 8 2022, 11:10.

Mar 30 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
41c92c6b98b7
·Philip Mueller, HS on Mar 30 2022, 12:52.
Fixed some compilation errors in the `python/py_integration_scheme.cc` file.
522a8942da5d
·branch: bugfixes/65-Making-the-integrators-available-in-Python
·Philip Mueller, HS on Mar 30 2022, 12:47.
Fixed the CMake of the Python interface.
6864c9ffb9ca
·Philip Mueller, HS on Mar 30 2022, 10:56.
This commit fixes a bug in the `assembleResidual()` function of the…
de452cb795f1
·Philip Mueller, HS on Mar 30 2022, 10:06.
Updated the implementation of the kinetic energy computation in the solid…
45847f50eb7d
·Philip Mueller, HS on Mar 30 2022, 09:53.

Mar 23 2022

Fixed a bug in the `assembleResidual()` function of the structural mechanics…
1531328d5dcb
·Philip Mueller on Mar 23 2022, 09:06.

Mar 22 2022

Updates the `assembleResidual()` functions of the `StructuralMechanicsModel`.
29b90b0f220d
·Philip Mueller, HS on Mar 22 2022, 13:52.
Updated the behaviour of the `getPotentialEnergy()` and `getKineticEnergy()`…
7be0c4621be1
·Philip Mueller, HS on Mar 22 2022, 13:48.

Mar 20 2022

Added a test for the new event.
7a3e0505d63f
·Philip Mueller, HS on Mar 20 2022, 16:49.
Updated the `DOFManager`, regarding the new event `MeshIsDistributedEvent`.
f01a71ed88a5
·Philip Mueller, HS on Mar 20 2022, 16:48.
Added a new mesh event for the case when the `Mesh` is set to be distributed.
aaed29043102
·Philip Mueller, HS on Mar 20 2022, 16:48.

Mar 18 2022

Making IntegratorScheme available in python
7c8e3eb1d349
·richart on Mar 18 2022, 16:04.

Mar 15 2022

Added a check to the `initFullImpl()` function of the `Model` to check the…
0dbef4831570
·Philip Mueller, HS on Mar 15 2022, 07:46.
Updated the Python interface of the `Mesh`.
1777d544246a
·Philip Mueller, HS on Mar 15 2022, 07:45.
Updated the `SolverVector` Interface.
a1120eb7be62
·Philip Mueller, HS on Mar 15 2022, 07:43.

Feb 18 2022

Merge branch 'features/missing-python-interface-for-mesh-data' into 'master'
f2068e9a8030
·tag: v4.0.1-pre2
·tag: v4.0.1
·richart on Feb 18 2022, 12:26.

Feb 10 2022

More typo in FindMumps
0262abf49444
·richart on Feb 10 2022, 14:01.
Code cleaning and debuging after rebase
e2b2f0ed2cc1
·richart on Feb 10 2022, 11:57.
Modified for clang outputs
f4c285cd20f1
·richart on Feb 10 2022, 10:04.
Defining a Manjaro docker that has akantu dependencies
4153dbf7c71d
·richart on Feb 10 2022, 09:58.
Detecting presence of pybind11
950df4181187
·richart on Feb 10 2022, 09:58.
Improving MUMPS detection
6d5f097ba1eb
·richart on Feb 10 2022, 09:58.
Typo and adding non deprecated version of variables
2c4fe29b9c9b
·richart on Feb 10 2022, 09:52.
Forcing skip_mpi_cxx in a way to not generate a warning
b095aa804ace
·richart on Feb 10 2022, 09:52.
Forcing MPI to look only for the needed langagues
de3f2a32afcc
·richart on Feb 10 2022, 09:52.
Implemented inflate which does the opposite of flatten
677ca31609cb
·richart on Feb 10 2022, 09:52.
Typo WARN -> WARNING
4d99cf952ec7
·richart on Feb 10 2022, 09:52.
Missing return statement
45ad4bb227b1
·richart on Feb 10 2022, 09:52.
Adding warnings on operator=
bf02562f93cf
·richart on Feb 10 2022, 09:52.
py::kw_only is pybind11 2.9
9661224b8806
·richart on Feb 10 2022, 09:52.
Adding operator= to ElementTypeMapArray
a52962367d43
·richart on Feb 10 2022, 09:52.
adding missing functions to the python interface
8a1376f66a9f
·richart on Feb 10 2022, 09:52.
Material name not set properly when using registerNewMaterial
4807036100eb
·richart on Feb 10 2022, 09:52.
Updated the Python interface of the solid mechanic model.
cdbd97116d13
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the material.
a9e5d4c6350f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the parser.
0f10ebd6aa4f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the ElementTypeMap
c6b4c9d7204a
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Merge branch 'bugfixes/flatten-internal-that-are-missing' into 'master'
9111b7503104
·richart on Feb 10 2022, 09:39.
Merge branch 'bugfixes/python_interface_energy_computations' into 'master'
26cd3a43fc8e
·richart on Feb 10 2022, 09:38.
Merge branch 'bugfixes/macos-compilation' into 'master'
ad183be1801f
·richart on Feb 10 2022, 09:37.

Feb 3 2022

Macos runner is only a beta for now
a93d28df4d6e
·branch: bugfixes/macos-compilation
·richart on Feb 3 2022, 09:28.

Feb 2 2022

Enforce MUMPS to be loaded last
bc1fa22d87db
·richart on Feb 2 2022, 19:06.
Test to run on the shared-macos runner
f693b3f65b43
·richart on Feb 2 2022, 17:17.
Making it possible to declare list of symbols and adding regexp for macos
bb4b04c3803b
·richart on Feb 2 2022, 17:13.
Fixed finding of mumps
96c9e7c84526
·hnat_lesiv on Feb 2 2022, 15:13.

Jan 21 2022

Merge branch 'features/mesh-periodic-info-in-python' into 'master'
ea422d3afcc1
·tdroch on Jan 21 2022, 15:18.

Jan 20 2022

Merge branch 'master' into features/mesh-periodic-info-in-python
28ddb633daa4
·branch: features/mesh-periodic-info-in-python
·Nicolas Richart on Jan 20 2022, 20:36.
Merge branch 'master' into bugfixes/python_interface_energy_computations
f62223fca929
·branch: bugfixes/python_interface_energy_computations
·Nicolas Richart on Jan 20 2022, 16:48.
Adding PeriodicSlaves and removing method that returns a unordered_multimap
06016ce80fae
·Nicolas Richart on Jan 20 2022, 16:44.
Merge branch 'master' into features/mesh-periodic-info-in-python
4e311a5e5310
·Nicolas Richart on Jan 20 2022, 14:14.

Jan 19 2022

Merge branch 'bugfixes/python_package_test' into 'master'
2a21aeb28190
·richart on Jan 19 2022, 15:31.
Correcting the tests for the python package
3d9e8d2ee369
·richart on Jan 19 2022, 15:31.
Adding the version of getPotentialEnergy by element_type
3c331277e5d9
·Nicolas Richart on Jan 19 2022, 09:47.
Added a missing function to the Python interface of the material.
46b653b86fe8
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.
This commit fixes a problem in the Python interface of the material regarding…
d829bf5a7799
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.

Jan 17 2022

Remove `except tags` in the configuration steps
b9f6bc187ae3
·Nicolas Richart on Jan 17 2022, 17:31.
Merge branch 'master' into bugfixes/flatten-internal-that-are-missing
32ba7f54c6bb
·branch: bugfixes/flatten-internal-that-are-missing
·Nicolas Richart on Jan 17 2022, 09:46.

Jan 15 2022

Merge branch 'bugfixes/docker-image' into 'master'
fbdc2ac1ae19
·tag: v4.0.1-pre1
·richart on Jan 15 2022, 21:05.
Changed debian:testing to debian:bullseye and corrected coverage
96aea35d9bf2
·Nicolas Richart on Jan 15 2022, 14:25.
Merge branch 'bugfixes/cmake_regex_error' into 'master'
9c40e0686a82
·richart on Jan 15 2022, 13:29.

Jan 14 2022

Merge branch 'master' into bugfixes/cmake_regex_error
faa3ae1123b2
·branch: bugfixes/cmake_regex_error
·anciaux on Jan 14 2022, 17:29.
Merge branch 'bugfixes/36-pretty-print-of-akantu-array' into 'master'
cb44d0f7690c
·tdroch on Jan 14 2022, 15:15.
change apt-get to apt hoping to have the key problem fixed
e8261daf649e
·anciaux on Jan 14 2022, 14:43.

Jan 13 2022

Some cmake version complains about an illegal character
b58c882ac2a1
·anciaux on Jan 13 2022, 13:45.

Jan 12 2022

Debugging warning linter
2610f04da5bc
·branch: bugfixes/36-pretty-print-of-akantu-array
·Nicolas Richart on Jan 12 2022, 10:35.

Jan 11 2022

Updating pterry printers and adding missing regexp for Arrays
1bf1286f15f4
·Nicolas Richart on Jan 11 2022, 18:46.

Dec 23 2021

Merge branch 'features/moving-pypi-package-in-main-akantu' into 'master'
dc73cc98c872
·richart on Dec 23 2021, 11:40.
This makes the CI build the python wheel - on master it pushes the wheel to the…
4d4db01864a7
·richart on Dec 23 2021, 11:40.

Dec 17 2021

Removing early out of a loop that can cause an flatten internal to not be…
849f02d8326e
·Nicolas Richart on Dec 17 2021, 10:28.

Nov 26 2021

Bug fix
7ff89e9b9c50
·richart on Nov 26 2021, 14:11.

Nov 23 2021

Merge branch 'features/terms-to-add-in-python' into 'master'
1c72ce33b004
·branch: bugfixes/32-python-interface-import-akantu-fails-with-4-0-0-problem-in-make-install
·tdroch on Nov 23 2021, 14:28.
Adding missing interface for periodic information
16af306e34b6
·richart on Nov 23 2021, 14:09.

Nov 10 2021

Bug fix in the interface
6503defbf56c
·branch: features/terms-to-add-in-python
·Nicolas Richart on Nov 10 2021, 18:29.

Nov 9 2021

Remove pure virtual where not needed
90b20d4c42ee
·Nicolas Richart on Nov 9 2021, 19:21.

Nov 5 2021

Adding missing consts
9fe7ea111967
·richart on Nov 5 2021, 18:10.
Adding a layer InterceptSolverCallback to simplify the interception
174a2e1ab3ac
·richart on Nov 5 2021, 15:04.
Moved dofs ids information to TermsToAssemble
3ad087540b2b
·richart on Nov 5 2021, 11:23.

Oct 22 2021

Merge branch 'features/28-getelementinradius-const-element-element-in-feengine…
adf760250693
·richart on Oct 22 2021, 16:56.
Example of solver_callback usage
6a555e268fa8
·Nicolas Richart on Oct 22 2021, 09:15.
Adding missing parts in the interface and debugging
44aa27ae672e
·Nicolas Richart on Oct 22 2021, 09:08.

Oct 21 2021

Merge branch 'features/python-doc' into 'master'
260e9988d3c2
·richart on Oct 21 2021, 13:16.
Merge branch 'master' of gitlab.com:akantu/akantu into features/python-doc
d5c9b97925e8
·branch: features/python-doc
·tdroch on Oct 21 2021, 08:58.
Merge remote-tracking branch 'origin/master' into features/terms-to-add-in…
ff3af874c77d
·Nicolas Richart on Oct 21 2021, 08:24.
Merge branch 'bugfixes/coverage-not-run-properly-anymore' into 'master'
4495c438977d
·richart on Oct 21 2021, 08:22.

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History
features/changes-to…4f7245f27871910d6540a93…