Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…84127a48254924b5cf8c412…

Jan 15 2020

Actually running the examples as tests
84127a482549
·richart on Jan 15 2020, 18:06.
make the new_material a bit faster
547777110e55
·richart on Jan 15 2020, 13:26.
factorizing scatter/gather from dof_synchronizer to synchronizer_impl
89c853c10096
·richart on Jan 15 2020, 13:24.

Jan 10 2020

adding detection of the mpiseq library
60b28fcdab22
·richart on Jan 10 2020, 13:27.
tuple concat trick
b6bcc70eec56
·richart on Jan 10 2020, 13:19.

Dec 20 2019

Seting policy for the <package>_ROOT variable in the environment
6d890200f749
·richart on Dec 20 2019, 14:22.
Wrongly protected compilation
f600d5b63508
·richart on Dec 20 2019, 14:14.

Dec 18 2019

Bug fix in the export of the target akantu
58bf31d34709
·richart on Dec 18 2019, 14:45.

Dec 13 2019

mpi skip mpicxx
551d547afddd
·richart on Dec 13 2019, 15:51.
extanding SparseMatrix and DOFManager interface in python
ac4f37242023
·richart on Dec 13 2019, 15:33.
Make the test work with older version of gtest
36ba3a35a3dc
·richart on Dec 13 2019, 14:45.
Merge commit '5e1ea8c938d8b63d462d21c8ea8292f3fdeaeebf'
e64ab77154c7
·richart on Dec 13 2019, 10:46.
A bit to aggressive with the clang-tidy
5e1ea8c938d8
·richart on Dec 13 2019, 10:45.

Dec 12 2019

Merge commit 'f8bcabd419ba24966eb8679e9610897dca660db1'
14731a9413a1
·richart on Dec 12 2019, 19:20.
Added named_zip
f8bcabd419ba
·richart on Dec 12 2019, 19:16.
tidied and formated version
bd71d08c3d98
·richart on Dec 12 2019, 15:38.
some cleaning to many class in the same file
596b60c4bdf3
·richart on Dec 12 2019, 13:57.

Dec 11 2019

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
1e38564b9582
·richart on Dec 11 2019, 18:37.
The fix for clang breaks gcc
8eadccc15c0a
·richart on Dec 11 2019, 18:36.
fixed warning [-Wempty-body] in Mesh::read
5461568ecf20
·frerot on Dec 11 2019, 17:35.
bug fix to compile on clang
f553aa3c8bf8
·richart on Dec 11 2019, 15:41.
Merge branch 'master' of gitlab.com:akantu/akantu
c4f89da9ae78
·richart on Dec 11 2019, 15:30.
Merge commit '0b3ffcd1a0d6eb6b458c72f62f21cd1400f64066'
3a7f4d5d5151
·richart on Dec 11 2019, 15:27.

Dec 10 2019

adding support for non gnu compilers
0b3ffcd1a0d6
·richart on Dec 10 2019, 21:23.
Adding named_tuples and string_literal
7ca19f1effd2
·richart on Dec 10 2019, 21:03.
Correcting namespace + warnings
480f4c7eee34
·richart on Dec 10 2019, 21:02.

Dec 9 2019

trying to accelerate the ci
24c0dfa18072
·richart on Dec 9 2019, 17:06.
improving ci
14042a61b3ad
·richart on Dec 9 2019, 16:59.
Add .gitlab-ci.yml
a07873cdbd98
·richart on Dec 9 2019, 16:51.
small improvements in ci
dcda0b809401
·richart on Dec 9 2019, 16:38.
inceasing timeouts
66e3133c8270
·richart on Dec 9 2019, 16:21.
cleaning a bit the repo
8a2af02b08a5
·richart on Dec 9 2019, 16:11.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
63499ac0083d
·richart on Dec 9 2019, 15:51.
Merge commit '05b77d3f6ef7d01e805b865ade26ac3acec3d668'
071c9fee244f
·richart on Dec 9 2019, 15:50.
bug fix in the filter iterator
05b77d3f6ef7
·richart on Dec 9 2019, 15:08.
Solving the gtest download failing the second time
ce29a60dc324
·richart on Dec 9 2019, 15:07.
linting
e3494c51066d
·richart on Dec 9 2019, 14:43.
changing the way to do filter adaptor
f9b8db2f4c06
·richart on Dec 9 2019, 11:27.
correcting the tests
e4fb2fa229fe
·richart on Dec 9 2019, 11:15.
flags to specify when akantu runs in docker
c70e24267884
·richart on Dec 9 2019, 10:35.

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
ecd4b6b18e86
·richart on Dec 6 2019, 17:00.
cleaning the readme
1f0ee966f6ce
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
a9fc7dd91ac1
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
8ffa4a46e04d
·richart on Dec 5 2019, 18:26.
style typos in junit
f685f876946c
·richart on Dec 5 2019, 18:05.
typo in reports
25386b2b650a
·richart on Dec 5 2019, 18:01.
working on the test reports
44bd0c9faa1b
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
8c5c7fca49a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
55f9df1179ec
·richart on Dec 5 2019, 17:20.
trying to figure out caches
7c47d181b50b
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
3e3b671f4ed1
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
306e1ccd2514
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
e971543af66a
·richart on Dec 5 2019, 14:45.
adding gitlab ci
dcd48d6203f6
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
119e53b27123
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
99248f118661
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
29c9bb06c2ba
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
6af7c64831a5
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
eb4a47db35a1
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
2b0e87f15c58
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
b483b2b1a05e
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
04b3801ffee5
·richart on Dec 4 2019, 16:58.
adding method in model python interface
493c4b60ecec
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
2848d379ed8a
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
f1a8a0161d49
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
701e628670f7
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
cf90f60abdde
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
f6a5d382c9cb
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
2385e94fa9ac
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
b41ec1bdbff4
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
4ae8393e9f47
·richart on Nov 28 2019, 12:24.
cleaning when failling
4b284882e28e
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
0c8304556d60
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
f501efc5a1a2
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
59faf9244eb0
·richart on Nov 27 2019, 15:44.
correcting some tests
5aafb992abf7
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
125fb50f0497
·richart on Nov 27 2019, 15:38.
Updating cmake
970ac3e26845
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e6f63992680a
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
f570859554d8
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
fda93b20c0c3
·richart on Nov 27 2019, 14:23.
moved an output file
522b0434bcf8
·richart on Nov 27 2019, 14:17.
minor corrections
f27246f38612
·richart on Nov 27 2019, 14:10.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
1edb8bd9845a
·richart on Nov 27 2019, 14:06.

Nov 11 2019

Adding docker images
81588efb99bd
·richart on Nov 11 2019, 16:47.
Cleaning debug couts
cab6f9eb1023
·richart on Nov 11 2019, 16:28.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f326650e4d3
·richart on Nov 11 2019, 16:05.
Cleaning unused parameters
d40b01128a4a
·richart on Nov 11 2019, 16:03.
Adding finite deformation materials to patch tests
585ad12eb2d9
·richart on Nov 11 2019, 16:03.
Adding finite deformation test
74624526009d
·richart on Nov 11 2019, 16:02.
aka_iterators simplification
af09af746396
·richart on Nov 11 2019, 16:01.

Nov 7 2019

adding the meshdatamaterialselector handling
ea9f5da46600
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
ee1dff673661
·anciaux on Nov 7 2019, 22:16.
Change default to simplify integration
b6d46f5101a7
·richart on Nov 7 2019, 17:28.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
d5e1ffd77387
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
04aac09fe6af
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
c8da98a363fb
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
81356e7a12a0
·anciaux on Nov 6 2019, 14:40.
Adding more missing files
570a09d1673a
·richart on Nov 6 2019, 14:33.
Adding missing file
341680976401
·richart on Nov 6 2019, 14:29.

Historyfeatures/changes-to…84127a48254924b5cf8c412…

Jan 15 2020

Jan 10 2020

Dec 20 2019

Dec 18 2019

Dec 13 2019

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Dec 11 2019

Dec 10 2019

Dec 9 2019

Dec 6 2019

Dec 5 2019

Dec 4 2019

Dec 3 2019

Dec 2 2019

Nov 29 2019

Nov 28 2019

Nov 27 2019

Nov 11 2019

Nov 7 2019

Nov 6 2019

History
features/changes-to…84127a48254924b5cf8c412…