Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…ecd4b6b18e86562929eb972…

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
ecd4b6b18e86
·richart on Dec 6 2019, 17:00.
cleaning the readme
1f0ee966f6ce
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
a9fc7dd91ac1
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
8ffa4a46e04d
·richart on Dec 5 2019, 18:26.
style typos in junit
f685f876946c
·richart on Dec 5 2019, 18:05.
typo in reports
25386b2b650a
·richart on Dec 5 2019, 18:01.
working on the test reports
44bd0c9faa1b
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
8c5c7fca49a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
55f9df1179ec
·richart on Dec 5 2019, 17:20.
trying to figure out caches
7c47d181b50b
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
3e3b671f4ed1
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
306e1ccd2514
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
e971543af66a
·richart on Dec 5 2019, 14:45.
adding gitlab ci
dcd48d6203f6
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
119e53b27123
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
99248f118661
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
29c9bb06c2ba
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
6af7c64831a5
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
eb4a47db35a1
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
2b0e87f15c58
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
b483b2b1a05e
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
04b3801ffee5
·richart on Dec 4 2019, 16:58.
adding method in model python interface
493c4b60ecec
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
2848d379ed8a
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
f1a8a0161d49
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
701e628670f7
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
cf90f60abdde
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
f6a5d382c9cb
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
2385e94fa9ac
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
b41ec1bdbff4
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
4ae8393e9f47
·richart on Nov 28 2019, 12:24.
cleaning when failling
4b284882e28e
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
0c8304556d60
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
f501efc5a1a2
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
59faf9244eb0
·richart on Nov 27 2019, 15:44.
correcting some tests
5aafb992abf7
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
125fb50f0497
·richart on Nov 27 2019, 15:38.
Updating cmake
970ac3e26845
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e6f63992680a
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
f570859554d8
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
fda93b20c0c3
·richart on Nov 27 2019, 14:23.
moved an output file
522b0434bcf8
·richart on Nov 27 2019, 14:17.
minor corrections
f27246f38612
·richart on Nov 27 2019, 14:10.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
1edb8bd9845a
·richart on Nov 27 2019, 14:06.

Nov 11 2019

Adding docker images
81588efb99bd
·richart on Nov 11 2019, 16:47.
Cleaning debug couts
cab6f9eb1023
·richart on Nov 11 2019, 16:28.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f326650e4d3
·richart on Nov 11 2019, 16:05.
Cleaning unused parameters
d40b01128a4a
·richart on Nov 11 2019, 16:03.
Adding finite deformation materials to patch tests
585ad12eb2d9
·richart on Nov 11 2019, 16:03.
Adding finite deformation test
74624526009d
·richart on Nov 11 2019, 16:02.
aka_iterators simplification
af09af746396
·richart on Nov 11 2019, 16:01.

Nov 7 2019

adding the meshdatamaterialselector handling
ea9f5da46600
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
ee1dff673661
·anciaux on Nov 7 2019, 22:16.
Change default to simplify integration
b6d46f5101a7
·richart on Nov 7 2019, 17:28.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
d5e1ffd77387
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
04aac09fe6af
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
c8da98a363fb
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
81356e7a12a0
·anciaux on Nov 6 2019, 14:40.
Adding more missing files
570a09d1673a
·richart on Nov 6 2019, 14:33.
Adding missing file
341680976401
·richart on Nov 6 2019, 14:29.

Nov 1 2019

policy CMP0077
e238b95239f9
·richart on Nov 1 2019, 11:17.
Including akantu_iterators as a sub project
a6f878784a5b
·richart on Nov 1 2019, 11:17.

Oct 30 2019

modify gitignore
146d0aec6280
·richart on Oct 30 2019, 16:36.
Add 'third-party/akantu_iterators/' from commit…
fbe055d5bd1a
·richart on Oct 30 2019, 16:33.
cleaning repo to move to sub repo
1d3b143d927f
·richart on Oct 30 2019, 16:32.
Bug fix for cmake > 3.11
5c6d9f803c20
·richart on Oct 30 2019, 16:15.
Minor change to limit the number of cores for the tests
1bdda648109d
·richart on Oct 30 2019, 16:14.

Oct 28 2019

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
147e1270d175
·richart on Oct 28 2019, 21:26.
Make akantu compile again on ubuntu xenial
7d5788cb11eb
·richart on Oct 28 2019, 21:24.

Oct 24 2019

Activating tests
407edeebc0fd
·richart on Oct 24 2019, 00:06.

Oct 23 2019

adding linters
53b225d01a2c
·richart on Oct 23 2019, 23:59.
moving ci files
5a404e915234
·richart on Oct 23 2019, 23:52.
Adding jenkinsfile
67175e63d6b5
·richart on Oct 23 2019, 23:27.
Add 'test/ci/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'
1026bc603baf
·richart on Oct 23 2019, 23:20.
initial commit
03e5b87c032b
·richart on Oct 23 2019, 22:49.

Oct 10 2019

fix bug on the group manager python interface
bbbac31366b5
·anciaux on Oct 10 2019, 16:27.

Oct 4 2019

onElementAdded only for elements of the correct dimension
850e6e7cab7d
·richart on Oct 4 2019, 17:09.
Moving the flipFacet call to the mesh facet creation code
9ced33b21085
·richart on Oct 4 2019, 16:50.
minor enhancements
12d6811c677d
·richart on Oct 4 2019, 15:59.
adding info to mesh events
fe9a13297180
·richart on Oct 4 2019, 15:58.
Tangent matrix re-computation a bit more clever
cabfaf40d130
·richart on Oct 4 2019, 15:57.

Oct 1 2019

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
6f1602db9de8
·anciaux on Oct 1 2019, 17:57.

Sep 27 2019

dirty hack to allow to dump a numpy array
52e99b106601
·anciaux on Sep 27 2019, 21:49.
saving the test for large rotations
5ad2b577d899
·anciaux on Sep 27 2019, 21:46.
temporary fix to pass a numpy to be dumped
f4c238d2be5e
·anciaux on Sep 27 2019, 21:45.
adding a adddumpfieldexternal
d1ff1a8538d2
·anciaux on Sep 27 2019, 14:57.

Sep 24 2019

adding the example on finite rotation in dynamics
8b4cbff3c1ea
·anciaux on Sep 24 2019, 22:17.
Add 'test/ci/scripts/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'
dec47ae94661
·richart on Sep 24 2019, 11:13.
splitting repositories
342ac7beecee
·richart on Sep 24 2019, 11:13.
arclinting arclint.py
df23807ae10b
·richart on Sep 24 2019, 11:09.
cleaning usless files
1f8ceb41cdb1
·richart on Sep 24 2019, 11:02.
preparation to split hbm scripts in a different project
41e7f928e7f3
·richart on Sep 24 2019, 10:56.
preparation to split hbm scripts in a different project
9b0b8a6b22b2
·richart on Sep 24 2019, 10:56.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
d16bb4b1e67d
·richart on Sep 24 2019, 10:46.

Sep 23 2019

added parser for junit in harbormaster ci scripts
07f320d9a304
·frerot on Sep 23 2019, 15:45.
added parser for junit in harbormaster ci scripts
41d91ae41651
·frerot on Sep 23 2019, 15:45.

Sep 17 2019

bug in the interface
4b00ed89f550
·richart on Sep 17 2019, 17:03.
Bug fix in exclusiveScan in sequential
3fdc4ee052a4
·richart on Sep 17 2019, 13:09.

Sep 4 2019

cleaning the code
8d4effaa2144
·richart on Sep 4 2019, 17:41.

Aug 27 2019

Do not compute shape derivatives on all type in onElementsAdded
dc616972a49a
·richart on Aug 27 2019, 16:55.

Historyfeatures/changes-to…ecd4b6b18e86562929eb972…

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History
features/changes-to…ecd4b6b18e86562929eb972…