Diffusion akantu (features/changes-to-address-joss-review) History

changes-to…28e453375af1cbaa42e7f23…

Mar 8 2022

Aligning the code with akantu coding conventions
547c4e3b1cbd
·richart on Mar 8 2022, 22:35.

Feb 25 2022

Updated the `SolverVector` class of the Python interface.
237ed1deceae
·Philip Mueller on Feb 25 2022, 12:58.
The `SparseMatrix` class now supports a function for testing if its entries are…
962960572b97
·Philip Mueller on Feb 25 2022, 12:26.
Updated the Python interface of the DOFManager.
22fdfd97576d
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:25.
It is now possible to force the creation of the lumped mass.
dca49f1688f5
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:23.
Implemented a shady way of computing the lumped mass matrix.
e18e82be6b0e
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:22.
Updaed the structural mechanics model.
fa030cf05453
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:17.

Feb 18 2022

Merge branch 'features/missing-python-interface-for-mesh-data' into 'master'
f2068e9a8030
·tag: v4.0.1-pre2
·tag: v4.0.1
·richart on Feb 18 2022, 12:26.

Feb 10 2022

Implemented inflate which does the opposite of flatten
677ca31609cb
·richart on Feb 10 2022, 09:52.
py::kw_only is pybind11 2.9
9661224b8806
·richart on Feb 10 2022, 09:52.
adding missing functions to the python interface
8a1376f66a9f
·richart on Feb 10 2022, 09:52.
Updated the Python interface of the solid mechanic model.
cdbd97116d13
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the material.
a9e5d4c6350f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the parser.
0f10ebd6aa4f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the ElementTypeMap
c6b4c9d7204a
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Merge branch 'bugfixes/python_interface_energy_computations' into 'master'
26cd3a43fc8e
·richart on Feb 10 2022, 09:38.

Jan 20 2022

Adding PeriodicSlaves and removing method that returns a unordered_multimap
06016ce80fae
·Nicolas Richart on Jan 20 2022, 16:44.
Merge branch 'master' into features/mesh-periodic-info-in-python
4e311a5e5310
·Nicolas Richart on Jan 20 2022, 14:14.

Jan 19 2022

Adding the version of getPotentialEnergy by element_type
3c331277e5d9
·Nicolas Richart on Jan 19 2022, 09:47.
Added a missing function to the Python interface of the material.
46b653b86fe8
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.
This commit fixes a problem in the Python interface of the material regarding…
d829bf5a7799
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.

Dec 23 2021

This makes the CI build the python wheel - on master it pushes the wheel to the…
4d4db01864a7
·richart on Dec 23 2021, 11:40.

Nov 26 2021

Bug fix
7ff89e9b9c50
·richart on Nov 26 2021, 14:11.

Nov 23 2021

Adding missing interface for periodic information
16af306e34b6
·richart on Nov 23 2021, 14:09.

Nov 10 2021

Bug fix in the interface
6503defbf56c
·branch: features/terms-to-add-in-python
·Nicolas Richart on Nov 10 2021, 18:29.

Nov 9 2021

Remove pure virtual where not needed
90b20d4c42ee
·Nicolas Richart on Nov 9 2021, 19:21.

Nov 5 2021

Adding a layer InterceptSolverCallback to simplify the interception
174a2e1ab3ac
·richart on Nov 5 2021, 15:04.
Moved dofs ids information to TermsToAssemble
3ad087540b2b
·richart on Nov 5 2021, 11:23.

Oct 22 2021

Adding missing parts in the interface and debugging
44aa27ae672e
·Nicolas Richart on Oct 22 2021, 09:08.

Oct 20 2021

Adding TermsToAdd and SolverCallbacks to python interface
1cf5685c9724
·richart on Oct 20 2021, 10:53.

Sep 21 2021

Merge branch 'features/another-take-at-ci-stuffs' into 'master'
5632dcaaf3f8
·anciaux on Sep 21 2021, 14:41.

Sep 17 2021

Linting the cc files too
d213b95f146f
·branch: features/another-take-at-ci-stuffs
·Nicolas Richart on Sep 17 2021, 10:45.

Sep 15 2021

clang-format everything
e5cfe0ce664a
·Nicolas Richart on Sep 15 2021, 09:27.

Sep 11 2021

Correcting include in py_material.cc
2244fa6a4217
·branch: bugfixes/27-bug-in-the-python-interface
·richart on Sep 11 2021, 11:18.

Aug 17 2021

Preparing version 4.0.0
a23d4b76944e
·richart on Aug 17 2021, 18:15.

Jul 20 2021

Merge branch 'master' into features/contact
251af691556a
·richart on Jul 20 2021, 18:23.

Jun 30 2021

Merge branch 'features/material-selector-python' into 'master'
92bb4e260b29
·anciaux on Jun 30 2021, 15:02.

Jun 24 2021

Corrected clang compilation error and linted some part of the contact code
40104a165ba1
·richart on Jun 24 2021, 22:37.
Correction based on remarks on MR !9
2985136e8a09
·richart on Jun 24 2021, 14:12.
Bug fix from the previous refactoring
13da75edd185
·richart on Jun 24 2021, 14:00.
Merge branch 'master' into features/contact
80a7ec7d8c7d
·richart on Jun 24 2021, 12:18.

Jun 23 2021

refactoring the code of the coupler solid contact
b75e7eac6591
·richart on Jun 23 2021, 22:23.

Jun 8 2021

Avoid returning reference to temporary on ubuntu
585800304567
·richart on Jun 8 2021, 11:24.
Merge branch 'master' into features/contact
bacf19476747
·richart on Jun 8 2021, 11:08.

Jun 6 2021

tests/examples and python modules for contact code added
205db61909bc
·pundir on Jun 6 2021, 01:17.

Jun 4 2021

wrap getCurrentPosition
2f2e169a8dd8
·branch: features/21-get-current-nodes-position-in-solid-mechanics-model-cohesive
·tdroch on Jun 4 2021, 18:02.

May 26 2021

Extending the groups interfaces
e53983915882
·richart on May 26 2021, 21:45.
Backward compatibility with older version of pybind11
55289ed9ac3e
·richart on May 26 2021, 21:04.
Improved material-selector
2d69ce3355d2
·richart on May 26 2021, 16:27.

May 14 2021

Merge branch 'master' into features/phasefield
45efedd36c79
·richart on May 14 2021, 11:23.
Merge branch 'master' into features/phasefield
48566fff3ed0
·branch: features/phasefield
·richart on May 14 2021, 11:23.
Correcting compilation errors on newer version of pybind11
10fb35bffbe5
·richart on May 14 2021, 10:13.
Correcting compilation errors on newer version of pybind11
5c0a955c98b9
·richart on May 14 2021, 10:13.

May 7 2021

Modified the import of py11_akantu
24b456355d09
·richart on May 7 2021, 18:09.
Modified the import of py11_akantu
f66bea2afab4
·branch: features/versioneer
·richart on May 7 2021, 18:09.
Relocated py11_akantu module as a submodule of akantu
160af748d326
·richart on May 7 2021, 13:45.
Relocated py11_akantu module as a submodule of akantu
2214b92238c9
·richart on May 7 2021, 13:45.
adding versioneer to generate a version number in the python interface
cd115a96a37c
·richart on May 7 2021, 08:57.
adding versioneer to generate a version number in the python interface
ccc0cad429ca
·richart on May 7 2021, 08:57.

Apr 7 2021

removing memory part for contact mechanics and coupler classes
e1527e69fc3c
·pundir on Apr 7 2021, 12:16.
Merge branch 'master' of gitlab.com:akantu/akantu into features/contact
b310023952d2
·pundir on Apr 7 2021, 10:14.

Apr 2 2021

removed the memory part from the phasefield model
a4358f0535b7
·pundir on Apr 2 2021, 08:56.
removed the memory part from the phasefield model
2f318e8d0e9b
·pundir on Apr 2 2021, 08:56.
Merge branch 'master' into features/phasefield
00d14211d024
·pundir on Apr 2 2021, 01:37.
Merge branch 'master' into features/phasefield
5acfa6ca970d
·pundir on Apr 2 2021, 01:37.

Mar 30 2021

add the possibility to return a vector of possible material allocators
8552d3ad87d8
·anciaux on Mar 30 2021, 10:32.
add the possibility to return a vector of possible material allocators
7f9fe3088b81
·anciaux on Mar 30 2021, 10:32.

Mar 29 2021

give better default to the fragmentation_manager tools
8a42a425df9d
·anciaux on Mar 29 2021, 12:24.
give better default to the fragmentation_manager tools
2c2ac9d01138
·anciaux on Mar 29 2021, 12:24.
adding the fragment manager to python interface
4aff21aa2c2a
·anciaux on Mar 29 2021, 10:23.
adding the fragment manager to python interface
c7e03d7ebae5
·anciaux on Mar 29 2021, 10:23.

Mar 15 2021

missing include in py_mesh
2d55c02870b7
·richart on Mar 15 2021, 21:00.
missing include in py_mesh
bc514ea38833
·richart on Mar 15 2021, 21:00.

Mar 13 2021

Fixing dumper warnings
9d302f1bae82
·richart on Mar 13 2021, 23:38.
Fixing dumper warnings
d7eb0b0c18be
·richart on Mar 13 2021, 23:38.
Adapting due to changes in structural mechanics
64cf152a54e1
·richart on Mar 13 2021, 19:14.
Adapting due to changes in structural mechanics
95d0dced15d1
·richart on Mar 13 2021, 19:14.
Merge branch 'master' into features/material_internals_memory
bc650421eb69
·richart on Mar 13 2021, 15:31.
Merge branch 'master' into features/material_internals_memory
9cb01e0c3a12
·richart on Mar 13 2021, 15:31.
Merge branch 'master' into features/material_internals_memory
526b254b52f6
·richart on Mar 13 2021, 14:42.
Merge branch 'master' into features/material_internals_memory
12c0a090caee
·richart on Mar 13 2021, 14:42.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
e7a653b7101a
·richart on Mar 13 2021, 13:23.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
db203e90b229
·branch: bugfixes/dynamics_structural_mechnanics
·richart on Mar 13 2021, 13:23.

Mar 12 2021

Copy paste error in the target name
62992923ac0f
·richart on Mar 12 2021, 23:35.
Copy paste error in the target name
7b357e2dce56
·richart on Mar 12 2021, 23:35.
Trying to remove warnings from pybind11 includes
851dabec11da
·richart on Mar 12 2021, 23:35.
Trying to remove warnings from pybind11 includes
d5fb526af36e
·richart on Mar 12 2021, 23:35.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
fcf9aaa26120
·richart on Mar 12 2021, 23:01.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
3d1bde8e1dbb
·richart on Mar 12 2021, 23:01.

Mar 10 2021

Adding energy computation per element group
f672a1a401c6
·richart on Mar 10 2021, 09:10.
Adding energy computation per element group
6f03fe32926e
·richart on Mar 10 2021, 09:10.
Getting rid of the static memory
a724d3f2390c
·richart on Mar 10 2021, 00:01.
Getting rid of the static memory
33327d9f46e4
·richart on Mar 10 2021, 00:01.

Mar 9 2021

fixed python interface for custom material and internals management
ec9bba98060e
·anciaux on Mar 9 2021, 16:28.
fixed python interface for custom material and internals management
a72501b17df2
·anciaux on Mar 9 2021, 16:28.

Mar 8 2021

Updated the Python interface of the `DOFManager` .
23e9184a75cb
·Philip Mueller, HS on Mar 8 2021, 15:08.
Updated the Python interface of the `DOFManager` .
bff781638aca
·Philip Mueller, HS on Mar 8 2021, 15:08.
Updated the text description of the `getMaterial()` functions of the structural…
fd4d89795c46
·Philip Mueller, HS on Mar 8 2021, 15:08.
Updated the text description of the `getMaterial()` functions of the structural…
1b9d3b1e2f9f
·Philip Mueller, HS on Mar 8 2021, 15:08.

Mar 6 2021

Adding energy computations
ed955d571096
·richart on Mar 6 2021, 19:30.

rAKA/pythonfeatures/changes-to…28e453375af1cbaa42e7f23…

Mar 8 2022

Feb 25 2022

Feb 18 2022

Feb 10 2022

Jan 20 2022

Jan 19 2022

Dec 23 2021

Nov 26 2021

Nov 23 2021

Nov 10 2021

Nov 9 2021

Nov 5 2021

Oct 22 2021

Oct 20 2021

Sep 21 2021

Sep 17 2021

Sep 15 2021

Sep 11 2021

Aug 17 2021

Jul 20 2021

Jun 30 2021

Jun 24 2021

Jun 23 2021

Jun 8 2021

Jun 6 2021

Jun 4 2021

May 26 2021

May 14 2021

May 7 2021

Apr 7 2021

Apr 2 2021

Mar 30 2021

Mar 29 2021

Mar 15 2021

Mar 13 2021

Mar 12 2021

Mar 10 2021

Mar 9 2021

Mar 8 2021

Mar 6 2021

rAKA/python
features/changes-to…28e453375af1cbaa42e7f23…