Diffusion akantu (features/changes-to-address-joss-review) History

changes-to…b6dbd90d648eae585721070…

Mar 30 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
b6dbd90d648e
·Philip Mueller, HS on Mar 30 2022, 12:53.
Fixed some compilation errors in the `python/py_integration_scheme.cc` file.
522a8942da5d
·branch: bugfixes/65-Making-the-integrators-available-in-Python
·Philip Mueller, HS on Mar 30 2022, 12:47.
Fixed the CMake of the Python interface.
6864c9ffb9ca
·Philip Mueller, HS on Mar 30 2022, 10:56.

Mar 18 2022

Making IntegratorScheme available in python
7c8e3eb1d349
·richart on Mar 18 2022, 16:04.

Mar 14 2022

Removing debug code
3fbdb1c1064d
·richart on Mar 14 2022, 11:26.

Mar 8 2022

Aligning the code with akantu coding conventions
547c4e3b1cbd
·richart on Mar 8 2022, 22:35.

Feb 25 2022

Updated the `SolverVector` class of the Python interface.
237ed1deceae
·Philip Mueller on Feb 25 2022, 12:58.
The `SparseMatrix` class now supports a function for testing if its entries are…
962960572b97
·Philip Mueller on Feb 25 2022, 12:26.
Updated the Python interface of the DOFManager.
22fdfd97576d
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:25.
It is now possible to force the creation of the lumped mass.
dca49f1688f5
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:23.
Implemented a shady way of computing the lumped mass matrix.
e18e82be6b0e
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:22.
Updaed the structural mechanics model.
fa030cf05453
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:17.

Feb 18 2022

Merge branch 'features/missing-python-interface-for-mesh-data' into 'master'
f2068e9a8030
·tag: v4.0.1-pre2
·tag: v4.0.1
·richart on Feb 18 2022, 12:26.

Feb 10 2022

Implemented inflate which does the opposite of flatten
677ca31609cb
·richart on Feb 10 2022, 09:52.
py::kw_only is pybind11 2.9
9661224b8806
·richart on Feb 10 2022, 09:52.
adding missing functions to the python interface
8a1376f66a9f
·richart on Feb 10 2022, 09:52.
Updated the Python interface of the solid mechanic model.
cdbd97116d13
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the material.
a9e5d4c6350f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the parser.
0f10ebd6aa4f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the ElementTypeMap
c6b4c9d7204a
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Merge branch 'bugfixes/python_interface_energy_computations' into 'master'
26cd3a43fc8e
·richart on Feb 10 2022, 09:38.

Jan 20 2022

Adding PeriodicSlaves and removing method that returns a unordered_multimap
06016ce80fae
·Nicolas Richart on Jan 20 2022, 16:44.
Merge branch 'master' into features/mesh-periodic-info-in-python
4e311a5e5310
·Nicolas Richart on Jan 20 2022, 14:14.

Jan 19 2022

Adding the version of getPotentialEnergy by element_type
3c331277e5d9
·Nicolas Richart on Jan 19 2022, 09:47.
Added a missing function to the Python interface of the material.
46b653b86fe8
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.
This commit fixes a problem in the Python interface of the material regarding…
d829bf5a7799
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.

Dec 23 2021

This makes the CI build the python wheel - on master it pushes the wheel to the…
4d4db01864a7
·richart on Dec 23 2021, 11:40.

Nov 26 2021

Bug fix
7ff89e9b9c50
·richart on Nov 26 2021, 14:11.

Nov 23 2021

Adding missing interface for periodic information
16af306e34b6
·richart on Nov 23 2021, 14:09.

Nov 10 2021

Bug fix in the interface
6503defbf56c
·branch: features/terms-to-add-in-python
·Nicolas Richart on Nov 10 2021, 18:29.

Nov 9 2021

Remove pure virtual where not needed
90b20d4c42ee
·Nicolas Richart on Nov 9 2021, 19:21.

Nov 5 2021

Adding a layer InterceptSolverCallback to simplify the interception
174a2e1ab3ac
·richart on Nov 5 2021, 15:04.
Moved dofs ids information to TermsToAssemble
3ad087540b2b
·richart on Nov 5 2021, 11:23.

Oct 22 2021

Adding missing parts in the interface and debugging
44aa27ae672e
·Nicolas Richart on Oct 22 2021, 09:08.

Oct 20 2021

Adding TermsToAdd and SolverCallbacks to python interface
1cf5685c9724
·richart on Oct 20 2021, 10:53.

Sep 21 2021

Merge branch 'features/another-take-at-ci-stuffs' into 'master'
5632dcaaf3f8
·anciaux on Sep 21 2021, 14:41.

Sep 17 2021

Linting the cc files too
d213b95f146f
·branch: features/another-take-at-ci-stuffs
·Nicolas Richart on Sep 17 2021, 10:45.

Sep 15 2021

clang-format everything
e5cfe0ce664a
·Nicolas Richart on Sep 15 2021, 09:27.

Sep 11 2021

Correcting include in py_material.cc
2244fa6a4217
·branch: bugfixes/27-bug-in-the-python-interface
·richart on Sep 11 2021, 11:18.

Aug 17 2021

Preparing version 4.0.0
a23d4b76944e
·richart on Aug 17 2021, 18:15.

Jul 20 2021

Merge branch 'master' into features/contact
251af691556a
·richart on Jul 20 2021, 18:23.

Jun 30 2021

Merge branch 'features/material-selector-python' into 'master'
92bb4e260b29
·anciaux on Jun 30 2021, 15:02.

Jun 24 2021

Corrected clang compilation error and linted some part of the contact code
40104a165ba1
·richart on Jun 24 2021, 22:37.
Correction based on remarks on MR !9
2985136e8a09
·richart on Jun 24 2021, 14:12.
Bug fix from the previous refactoring
13da75edd185
·richart on Jun 24 2021, 14:00.
Merge branch 'master' into features/contact
80a7ec7d8c7d
·richart on Jun 24 2021, 12:18.

Jun 23 2021

refactoring the code of the coupler solid contact
b75e7eac6591
·richart on Jun 23 2021, 22:23.

Jun 8 2021

Avoid returning reference to temporary on ubuntu
585800304567
·richart on Jun 8 2021, 11:24.
Merge branch 'master' into features/contact
bacf19476747
·richart on Jun 8 2021, 11:08.

Jun 6 2021

tests/examples and python modules for contact code added
205db61909bc
·pundir on Jun 6 2021, 01:17.

Jun 4 2021

wrap getCurrentPosition
2f2e169a8dd8
·branch: features/21-get-current-nodes-position-in-solid-mechanics-model-cohesive
·tdroch on Jun 4 2021, 18:02.

May 26 2021

Extending the groups interfaces
e53983915882
·richart on May 26 2021, 21:45.
Backward compatibility with older version of pybind11
55289ed9ac3e
·richart on May 26 2021, 21:04.
Improved material-selector
2d69ce3355d2
·richart on May 26 2021, 16:27.

May 14 2021

Merge branch 'master' into features/phasefield
45efedd36c79
·richart on May 14 2021, 11:23.
Merge branch 'master' into features/phasefield
48566fff3ed0
·branch: features/phasefield
·richart on May 14 2021, 11:23.
Correcting compilation errors on newer version of pybind11
10fb35bffbe5
·richart on May 14 2021, 10:13.
Correcting compilation errors on newer version of pybind11
5c0a955c98b9
·richart on May 14 2021, 10:13.

May 7 2021

Modified the import of py11_akantu
24b456355d09
·richart on May 7 2021, 18:09.
Modified the import of py11_akantu
f66bea2afab4
·branch: features/versioneer
·richart on May 7 2021, 18:09.
Relocated py11_akantu module as a submodule of akantu
160af748d326
·richart on May 7 2021, 13:45.
Relocated py11_akantu module as a submodule of akantu
2214b92238c9
·richart on May 7 2021, 13:45.
adding versioneer to generate a version number in the python interface
cd115a96a37c
·richart on May 7 2021, 08:57.
adding versioneer to generate a version number in the python interface
ccc0cad429ca
·richart on May 7 2021, 08:57.

Apr 7 2021

removing memory part for contact mechanics and coupler classes
e1527e69fc3c
·pundir on Apr 7 2021, 12:16.
Merge branch 'master' of gitlab.com:akantu/akantu into features/contact
b310023952d2
·pundir on Apr 7 2021, 10:14.

Apr 2 2021

removed the memory part from the phasefield model
a4358f0535b7
·pundir on Apr 2 2021, 08:56.
removed the memory part from the phasefield model
2f318e8d0e9b
·pundir on Apr 2 2021, 08:56.
Merge branch 'master' into features/phasefield
00d14211d024
·pundir on Apr 2 2021, 01:37.
Merge branch 'master' into features/phasefield
5acfa6ca970d
·pundir on Apr 2 2021, 01:37.

Mar 30 2021

add the possibility to return a vector of possible material allocators
8552d3ad87d8
·anciaux on Mar 30 2021, 10:32.
add the possibility to return a vector of possible material allocators
7f9fe3088b81
·anciaux on Mar 30 2021, 10:32.

Mar 29 2021

give better default to the fragmentation_manager tools
8a42a425df9d
·anciaux on Mar 29 2021, 12:24.
give better default to the fragmentation_manager tools
2c2ac9d01138
·anciaux on Mar 29 2021, 12:24.
adding the fragment manager to python interface
4aff21aa2c2a
·anciaux on Mar 29 2021, 10:23.
adding the fragment manager to python interface
c7e03d7ebae5
·anciaux on Mar 29 2021, 10:23.

Mar 15 2021

missing include in py_mesh
2d55c02870b7
·richart on Mar 15 2021, 21:00.
missing include in py_mesh
bc514ea38833
·richart on Mar 15 2021, 21:00.

Mar 13 2021

Fixing dumper warnings
9d302f1bae82
·richart on Mar 13 2021, 23:38.
Fixing dumper warnings
d7eb0b0c18be
·richart on Mar 13 2021, 23:38.
Adapting due to changes in structural mechanics
64cf152a54e1
·richart on Mar 13 2021, 19:14.
Adapting due to changes in structural mechanics
95d0dced15d1
·richart on Mar 13 2021, 19:14.
Merge branch 'master' into features/material_internals_memory
bc650421eb69
·richart on Mar 13 2021, 15:31.
Merge branch 'master' into features/material_internals_memory
9cb01e0c3a12
·richart on Mar 13 2021, 15:31.
Merge branch 'master' into features/material_internals_memory
526b254b52f6
·richart on Mar 13 2021, 14:42.
Merge branch 'master' into features/material_internals_memory
12c0a090caee
·richart on Mar 13 2021, 14:42.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
e7a653b7101a
·richart on Mar 13 2021, 13:23.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
db203e90b229
·branch: bugfixes/dynamics_structural_mechnanics
·richart on Mar 13 2021, 13:23.

Mar 12 2021

Copy paste error in the target name
62992923ac0f
·richart on Mar 12 2021, 23:35.
Copy paste error in the target name
7b357e2dce56
·richart on Mar 12 2021, 23:35.
Trying to remove warnings from pybind11 includes
851dabec11da
·richart on Mar 12 2021, 23:35.
Trying to remove warnings from pybind11 includes
d5fb526af36e
·richart on Mar 12 2021, 23:35.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
fcf9aaa26120
·richart on Mar 12 2021, 23:01.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
3d1bde8e1dbb
·richart on Mar 12 2021, 23:01.

Mar 10 2021

Adding energy computation per element group
f672a1a401c6
·richart on Mar 10 2021, 09:10.
Adding energy computation per element group
6f03fe32926e
·richart on Mar 10 2021, 09:10.
Getting rid of the static memory
a724d3f2390c
·richart on Mar 10 2021, 00:01.
Getting rid of the static memory
33327d9f46e4
·richart on Mar 10 2021, 00:01.

Mar 9 2021

fixed python interface for custom material and internals management
ec9bba98060e
·anciaux on Mar 9 2021, 16:28.
fixed python interface for custom material and internals management
a72501b17df2
·anciaux on Mar 9 2021, 16:28.

rAKA/pythonfeatures/changes-to…b6dbd90d648eae585721070…

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rAKA/python
features/changes-to…b6dbd90d648eae585721070…