Diffusion akantu (features/developer-manual-initial) History

History
features/developer…f2e4a0fa4491d86e84bc4da…

Mar 15 2020

some changes to make PBC work again in sequential: to review
f2e4a0fa4491
·anciaux on Mar 15 2020, 09:55.

Mar 13 2020

correct a memory fault problem with the pbc
4da59a0e63c4
·anciaux on Mar 13 2020, 08:35.

Mar 11 2020

use new iterators on types
df6425cb1cd3
·anciaux on Mar 11 2020, 00:09.

Mar 9 2020

set tag upper bound based in MPI_COMM_WORLD
d751a95ffe34
·anciaux on Mar 9 2020, 17:22.

Mar 6 2020

extend communicator creation in akantu
30ae51bad185
·anciaux on Mar 6 2020, 18:20.
Merge commit '6f65103bbed23c65deb66a484bc8fb13f04216f4' into HEAD
5dd81bf14a97
·anciaux on Mar 6 2020, 13:00.

Feb 18 2020

Correcting compilation problem
d5e7e2d9fcb0
·richart on Feb 18 2020, 16:46.
Example of using python as boundary condition
b450f564df7d
·richart on Feb 18 2020, 15:02.
Adding a possibility to insert cohesive element only in some
684f4e9f9da5
·richart on Feb 18 2020, 13:02.

Jan 24 2020

Bug fix in pythonpath
e55ad43b118d
·richart on Jan 24 2020, 16:39.

Jan 23 2020

Correcting install directory for old cmake versions
351de5cb04ec
·richart on Jan 23 2020, 18:19.
Installing python binding and akantu-iterators properly
8b12a8c50daf
·richart on Jan 23 2020, 18:07.

Jan 22 2020

improving the install process
4a17d216cedb
·richart on Jan 22 2020, 18:29.
Merge branch 'master' into 'master'
6f65103bbed2
·richart on Jan 22 2020, 15:02.
fix compilation error for c++17 standard
01e5634d792c
·anciaux on Jan 22 2020, 14:50.

Jan 15 2020

Actually running the examples as tests
f7fc4feca70a
·richart on Jan 15 2020, 18:06.
make the new_material a bit faster
eb1c624aba2f
·richart on Jan 15 2020, 13:26.
factorizing scatter/gather from dof_synchronizer to synchronizer_impl
72bc1b60d6fa
·richart on Jan 15 2020, 13:24.

Jan 10 2020

adding detection of the mpiseq library
658b6fd7fa88
·richart on Jan 10 2020, 13:27.
tuple concat trick
b72970096de0
·richart on Jan 10 2020, 13:19.

Dec 20 2019

Seting policy for the <package>_ROOT variable in the environment
cdbd6f96b11e
·richart on Dec 20 2019, 14:22.
Wrongly protected compilation
3741ee66d19a
·richart on Dec 20 2019, 14:14.

Dec 18 2019

Bug fix in the export of the target akantu
38689942d5bb
·richart on Dec 18 2019, 14:45.

Dec 13 2019

mpi skip mpicxx
668db21aecb0
·richart on Dec 13 2019, 15:51.
extanding SparseMatrix and DOFManager interface in python
0ff570ffbf37
·richart on Dec 13 2019, 15:33.
Make the test work with older version of gtest
ffa47eb473d7
·richart on Dec 13 2019, 14:45.
cleaning lincences and clang-formating
58c60757d33e
·richart on Dec 13 2019, 11:26.
Merge commit '77f80db265988ff43dd2ab40ac712b0ab8053711'
093c0a728b0e
·richart on Dec 13 2019, 10:46.
A bit to aggressive with the clang-tidy
77f80db26598
·richart on Dec 13 2019, 10:45.

Dec 12 2019

Merge commit '7085e4eba3cb6bdc76ba56c87cd3b686039aefaf'
74233cffde18
·richart on Dec 12 2019, 19:20.
Added named_zip
7085e4eba3cb
·richart on Dec 12 2019, 19:16.
tidied and formated version
507f7dbccbdf
·richart on Dec 12 2019, 15:38.
some cleaning to many class in the same file
3889358d690a
·richart on Dec 12 2019, 13:57.

Dec 11 2019

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
9af5e8823b34
·richart on Dec 11 2019, 18:37.
The fix for clang breaks gcc
238e081bfa3e
·richart on Dec 11 2019, 18:36.
fixed warning [-Wempty-body] in Mesh::read
b9311d8ff17e
·frerot on Dec 11 2019, 17:35.
bug fix to compile on clang
ff7c24cea62e
·richart on Dec 11 2019, 15:41.
Merge branch 'master' of gitlab.com:akantu/akantu
586f5f155d7a
·richart on Dec 11 2019, 15:30.
Merge commit '64aba083b7feb682b63ea7aba22d000b30666056'
699861af0ea7
·richart on Dec 11 2019, 15:27.

Dec 10 2019

adding support for non gnu compilers
64aba083b7fe
·richart on Dec 10 2019, 21:23.
Adding named_tuples and string_literal
451e39ec639b
·richart on Dec 10 2019, 21:03.
Correcting namespace + warnings
d19afc22171d
·richart on Dec 10 2019, 21:02.

Dec 9 2019

trying to accelerate the ci
c648795f225e
·richart on Dec 9 2019, 17:06.
improving ci
c80efd72a820
·richart on Dec 9 2019, 16:59.
Add .gitlab-ci.yml
48349fadeece
·richart on Dec 9 2019, 16:51.
small improvements in ci
3ad7addae7f2
·richart on Dec 9 2019, 16:38.
inceasing timeouts
74def707432e
·richart on Dec 9 2019, 16:21.
cleaning a bit the repo
48535c34dff3
·richart on Dec 9 2019, 16:11.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
fca35ee94278
·richart on Dec 9 2019, 15:51.
Merge commit 'd9766dec5fd1c5eb0b1bbaab9694dc44dcc74f15'
ea1f32bc5f12
·richart on Dec 9 2019, 15:50.
bug fix in the filter iterator
d9766dec5fd1
·richart on Dec 9 2019, 15:08.
Solving the gtest download failing the second time
60ed7290eaa8
·richart on Dec 9 2019, 15:07.
linting
5d55d5612076
·richart on Dec 9 2019, 14:43.
changing the way to do filter adaptor
221e6ca74e8e
·richart on Dec 9 2019, 11:27.
correcting the tests
0c5c265b6584
·richart on Dec 9 2019, 11:15.
flags to specify when akantu runs in docker
3f594cbb3680
·richart on Dec 9 2019, 10:35.

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
f142b17e9176
·richart on Dec 6 2019, 17:00.
cleaning the readme
09b534cfadc6
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
2283629c888f
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
418f0cdcdd93
·richart on Dec 5 2019, 18:26.
style typos in junit
b578a0cb4fe7
·richart on Dec 5 2019, 18:05.
typo in reports
5d475fc77c44
·richart on Dec 5 2019, 18:01.
working on the test reports
ecfeb6b962e3
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
5c6b97f4c8a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
f5b079a3431a
·richart on Dec 5 2019, 17:20.
trying to figure out caches
e853faf42385
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
fd67091319e6
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
09f52dea9329
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
38b6e7a39aff
·richart on Dec 5 2019, 14:45.
adding gitlab ci
a68698997ea2
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
8c62f206d530
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
ee95d25f3f67
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
d5726d36cee2
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
fccb500bf91a
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
0e809a7ec2c3
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
a8efc4cf46fc
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
db48d22d8064
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
fb6207862153
·richart on Dec 4 2019, 16:58.
adding method in model python interface
356f1dac21fd
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
5ac36c978a89
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
04340e532b9c
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
092b290520c2
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
74ea992b45aa
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
549557bb86a5
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
9bdc4bbe7ab0
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
87f273ee8dfd
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
1f21882a7371
·richart on Nov 28 2019, 12:24.
cleaning when failling
8ec02b2fbcb9
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
dcdb1495214c
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
a7b944d6c817
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
525799376c2e
·richart on Nov 27 2019, 15:44.
correcting some tests
c4cc4b4c47dd
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
2d7706576326
·richart on Nov 27 2019, 15:38.
Updating cmake
3b5ad8bc6ce8
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e0974cf6bcc5
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
ba6837e25b9b
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
657da1256e23
·richart on Nov 27 2019, 14:23.
moved an output file
9597c2542bdf
·richart on Nov 27 2019, 14:17.
minor corrections
c8376fd17f15
·richart on Nov 27 2019, 14:10.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
6fc95097d887
·richart on Nov 27 2019, 14:06.

Historyfeatures/developer…f2e4a0fa4491d86e84bc4da…

Mar 15 2020

Mar 13 2020

Mar 11 2020

Mar 9 2020

Mar 6 2020

Feb 18 2020

Jan 24 2020

Jan 23 2020

Jan 22 2020

Jan 15 2020

Jan 10 2020

Dec 20 2019

Dec 18 2019

Dec 13 2019

Dec 12 2019

Dec 11 2019

Dec 10 2019

Dec 9 2019

Dec 6 2019

Dec 5 2019

Dec 4 2019

Dec 3 2019

Dec 2 2019

Nov 29 2019

Nov 28 2019

Nov 27 2019

History
features/developer…f2e4a0fa4491d86e84bc4da…