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Apr 3 2019
Apr 3 2019
MakeIV function
deen committed rCHIMERAPYTHON55be4e10ead4: Added option to keep file open while writing (authored by deen).
Added option to keep file open while writing
deen committed rCHIMERAPYTHON7e97dad18ff3: Upon changing voltage, Filename changes (authored by deen).
Upon changing voltage, Filename changes
Close files after comitting
write 'ab'
Modified saving file
Open file with 'w'
Change save name
Fixed saving of voltage
Added plotting for samples
Apr 2 2019
Apr 2 2019
Added eventdetection
Remove buffer writing from plotting
modified plotting slightly
deen committed rCHIMERAPYTHONe9cd443c3340: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Mar 22 2019
Mar 22 2019
deen committed rNPTOOLS1a44d300663d: Changed classes such that Currentdrop is always mean (authored by deen).
Changed classes such that Currentdrop is always mean
import Range1D
xlim and ylim on figure
deen committed rNPTOOLS94b4da545ead: Merge branch 'master' of ssh://c4science.ch/source/Nanopore-tools (authored by deen).
Merge branch 'master' of ssh://c4science.ch/source/Nanopore-tools
Removed import EventPlots, was unused
added limits to the function
Mar 13 2019
Mar 13 2019
Mar 12 2019
Mar 12 2019
minor axes changes, buffer drawing
Added buffersize
Changed to 65536
Changed to os.path.isfile
Cleaned up Chimera file
Mar 11 2019
Mar 11 2019
Try faster low pass
cut off first and last 100 samples
deen committed rCHIMERAPYTHON04c6982e2d8c: Optimized low pass, and new samplerate (authored by deen).
Optimized low pass, and new samplerate
Minor cosmetic changes
Added plotting function
Added check if zero current
Changed to None
Added variable for updateDACvalues1
Mar 8 2019
Mar 8 2019
deen committed rCHIMERAPYTHONc5e89c8e5ccd: Changed setting class to ChimeraSettings Removed some variables that were not… (authored by deen).
Changed setting class to ChimeraSettings Removed some variables that were not…
Mar 6 2019
Mar 6 2019
fixed bigs, launching and running
deen committed rCHIMERAPYTHON59410c2492c4: Changed variable class to ChimeraVariables Added options to ChimeraControls for… (authored by deen).
Changed variable class to ChimeraVariables Added options to ChimeraControls for…
Mar 5 2019
Mar 5 2019
deen committed rCHIMERAPYTHON556452c465fb: Initial commit cleaned up Chimera python function (authored by deen).
Initial commit cleaned up Chimera python function
Jan 16 2019
Jan 16 2019
deen committed rNPTOOLS475f5761a285: Simplified version of GTau plot using Bokeh (authored by deen).
Simplified version of GTau plot using Bokeh
Jan 14 2019
Jan 14 2019
Added PSF plotting function
Dec 12 2018
Dec 12 2018
deen committed rNPTOOLS4992f8975ef8: Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows… (authored by deen).
Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows…
Dec 10 2018
Dec 10 2018
Import Functions in LoadData
Dec 6 2018
Dec 6 2018
added back plotgui.py
Dec 5 2018
Dec 5 2018
Added LoadVariable function
Removed cutting of FullTrace
Implemented plotting in Bokeh
deen committed rNPTOOLSce6047fe7825: Added Plotting function for simple trace plot (authored by deen).
Added Plotting function for simple trace plot
Optimized imports, restructured code a bit
deen committed rNPTOOLSf6dac0696a44: Moved Loading data functions to new script, for easier access. Moved unused… (authored by deen).
Moved Loading data functions to new script, for easier access. Moved unused…
Cleaning up of git
deen committed rNPTOOLSd20e559ae01d: Added check for length to not show error message if missing data (authored by deen).
Added check for length to not show error message if missing data
Dec 4 2018
Dec 4 2018
deen committed rNPTOOLSacffb6d8ec58: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
changed check to not 0
Nov 23 2018
Nov 23 2018
deen committed rNPTOOLS06756ab5ac7e: Changed opening of abf files, current units appear to be in pA. (authored by deen).
Changed opening of abf files, current units appear to be in pA.
Nov 21 2018
Nov 21 2018
deen committed rNPTOOLS4debbda11487: bugfix for using default extension if none is specified. Added string with… (authored by deen).
bugfix for using default extension if none is specified. Added string with…
Nov 6 2018
Nov 6 2018
deen committed rNPTOOLS72d130d353ae: Added verbose options to most load functions and event detection and IV making. (authored by deen).
Added verbose options to most load functions and event detection and IV making.
deen committed rNPTOOLSd8f7aeba5740: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Oct 23 2018
Oct 23 2018
deen committed rNPTOOLS1b48a3ac0be4: Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for… (authored by deen).
Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for…
deen committed rNPTOOLSd4e385f6328a: Changed fit types. Added Standard error key (SE) that correctly captures the… (authored by deen).
Changed fit types. Added Standard error key (SE) that correctly captures the…
Sep 26 2018
Sep 26 2018
Changed to Rough
Added voltage in plot
Misspelling......
Bugfix, incorrectly estimating baseline
Minor bugfix for plotting if not fitted
Bugfix for opening data
deen committed rNPTOOLS23cadb544365: fixed plotting of events when clicked. Added option to show original trace with… (authored by deen).
fixed plotting of events when clicked. Added option to show original trace with…
deen committed rNPTOOLSa8388ba67ded: Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split… (authored by deen).
Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split…
Sep 25 2018
Sep 25 2018
deen committed rNPTOOLS933b5123747b: Added interactive G-tau plot. Shows only CUSUM fitted events for now (with… (authored by deen).
Added interactive G-tau plot. Shows only CUSUM fitted events for now (with…
deen committed rNPTOOLS1f6786480d9e: Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses. (authored by deen).
Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses.
Sep 21 2018
Sep 21 2018
Changed saving of data
Implement CUSUM in event detection
Fixed CUSUM function
move to directory
deen added a reverting change for rNPTOOLS2e1d4a0e578d: Change directory for making IV: rNPTOOLSb3c62d386c00: Revert "Change directory for making IV".
Revert "Change directory for making IV"
deen committed rNPTOOLS3b3cb8f58ddd: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
Change directory for making IV
Sep 20 2018
Sep 20 2018
deen committed rNPTOOLS30bc3a694243: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
added delay variable
Sep 12 2018
Sep 12 2018
deen committed rNPTOOLS29927513e285: Merge remote-tracking branch 'origin/master' (authored by deen).
Merge remote-tracking branch 'origin/master'
make type of coefficient all
Added option for lowpass
Implemented CUSUM
Sep 10 2018
Sep 10 2018
Added option to save as CSV
Sep 7 2018
Sep 7 2018
deen committed rNPTOOLS6175240322bf: Check if directory for saving exists, otherwise make it (authored by deen).
Check if directory for saving exists, otherwise make it
variable changes
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