Phriction Projects Wikis Bioimaging And Optics Platform Image Processing QuPath QuPath Bugs & Errors History Version 2 vs 3
Version 2 vs 3
Version 2 vs 3
Content Changes
Content Changes
= QuPath no longer opens the images in your project =
If QuPath opens the **project** but gives you an error whenever you try to open an image, there are 3 common causes.
{F10333316, size= full}
== 1. Your images are no longer there ==
Check the path that is written in the error log, like in the example above, and make sure that they are there
== 2. The project has absolute image paths and was moved ==
This is the most common cause. According to our Guidelines, you should always have your images in a subfolder inside your project folder:
```
Project folder/
|---> images/
|---> **Your images here**
|---> project.qupproj
```
To check this, go to your project folder and open the `project.qpproj` file with Notepad. Scroll to the end of the file.
If you see something with **Absolute Paths**
{F10333342, size=full}
You should change them to something with **Relative Paths**
{F10333350, size=full}
=== How to do it ===
The idea is that if the images are in a subfolder of your project folder, QuPath //should// be able to use **relative paths**.
So what you need to do is replace the absolute path (like `Z:\\biop\\IMAGE PROCESSING\\7-Projects\\VSI Reader`) to `{$PROJECT_DIR}`
In Notepad++ you can use Replace {key CTRL H}
{F10333368, size=full}
== 3. You are missing an extension to open the images ==
Please make sure that the BioFormats Extension is installed. You can check this by going to
{nav Help > Installed Extensions} and making sure that it is present
{F10333308, size = full}
= QuPath no longer opens the images in your project =
If QuPath opens the **project** but gives you an error whenever you try to open an image, there are 3 common causes.
{F10333316, size= full}
== 1. Your images are no longer there ==
Check the path that is written in the error log, like in the example above, and make sure that they are there
== 2. The project has absolute image paths and was moved ==
This is the most common cause. According to our Guidelines, you should always have your images in a subfolder inside your project folder:
```
Project folder/
|---> images/
|---> **Your images here**
|---> project.qupproj
```
To check this, go to your project folder and open the `project.qpproj` file with Notepad. Scroll to the end of the file.
If you see something with **Absolute Paths**
{F10333342, size=full}
You should change them to something with **Relative Paths**
{F10333350, size=full}
=== How to do it ===
The idea is that if the images are in a subfolder of your project folder, QuPath //should// be able to use **relative paths**.
So what you need to do is replace the absolute path (like `Z:\\biop\\IMAGE PROCESSING\\7-Projects\\VSI Reader`) to `{$PROJECT_DIR}`
In Notepad++ you can use Replace {key CTRL H}
{F10333368, size=full}
== 3. You are missing an extension to open the images ==
Please make sure that the BioFormats Extension is installed. You can check this by going to
{nav Help > Installed Extensions} and making sure that it is present
{F10333308, size = full}
c4science · Help