= Scripts = [[http://imagej.github.io/presentations/2015-09-04-imagej2-scripting/#/| Course on ImageJ 2 Scripts]] = Ops = On the forum, people are interested in creating ImageJ Ops for colocalization, which would be very useful... Here I will document my attempts at creating an OP, because using JACoP Tools is becoming a nightmare.

= Scripts = [[http://imagej.github.io/presentations/2015-09-04-imagej2-scripting/#/| Course on ImageJ 2 Scripts]] = Ops = On the forum, people are interested in creating ImageJ Ops for colocalization, which would be very useful... Here I will document my attempts at creating an OP, because using JACoP Tools is becoming a nightmare. = Duplicating an Existing Project with IntelliJ = Have your base project open. From the project use {nav Right-Click > Refactor > Copy... } {F11818148, size=full} Give it a new name and select the **Parent Directory** {F11818151, size=full} IntelliJ creates it but does not open it automatically Go to nav{File > Open...} Select the folder with your new project, here `new-project` {F11818154, size=full} == Changes to reflect the new project properties == === In the POM === To reflect the new project. Important fields are # `artifactId`, # `name` # `description` # `main-class` (in the `properties` tag) === In the {nav File > Project Structure...} === You can change the following things `Project Name` {F11818206, size=full} `Module Name` under **Modules** {F11818216, size=full} === The actual Java Class === Navigate to one of the Java Classes in your new project and hit {nav Right-click > Refactor > Rename...} And rename it to reflect your new project. == Nice things to have == If you want to have your resulting JAR and dependencies copied to a Fiji subdirectory when you hit **install** You need to add this in your POM under the `<Properties>` tag `<scijava.app.subdirectory>plugins/MyFolder</scijava.app.subdirectory>` For this to work, and according to best practices, you need to create a `settings.xml` file in your `$HOME/.m2/` folder. The file does not exist initially, so you should create it and then add the following. ``` <settings> <profiles> <profile> <id>imagej</id> <activation> <file> <exists>C:/Fiji-Dev/</exists> </file> </activation> <properties> <scijava.app.directory>C:/Fiji-Dev/</scijava.app.directory> <delete.other.versions>true</delete.other.versions> </properties> </profile> </profiles> </settings> ``` (This will now be applied to all your projects involving ImageJ) Change the location of the Fiji installation (here `C:/Fiji-Dev/`)

= Scripts = [[http://imagej.github.io/presentations/2015-09-04-imagej2-scripting/#/| Course on ImageJ 2 Scripts]] = Ops = On the forum, people are interested in creating ImageJ Ops for colocalization, which would be very useful... Here I will document my attempts at creating an OP, because using JACoP Tools is becoming a nightmare. = Duplicating an Existing Project with IntelliJ = Have your base project open. From the project use {nav Right-Click > Refactor > Copy... } {F11818148, size=full} Give it a new name and select the **Parent Directory** {F11818151, size=full} IntelliJ creates it but does not open it automatically Go to nav{File > Open...} Select the folder with your new project, here `new-project` {F11818154, size=full} == Changes to reflect the new project properties == === In the POM === To reflect the new project. Important fields are # `artifactId`, # `name` # `description` # `main-class` (in the `properties` tag) === In the {nav File > Project Structure...} === You can change the following things `Project Name` {F11818206, size=full} `Module Name` under **Modules** {F11818216, size=full} === The actual Java Class === Navigate to one of the Java Classes in your new project and hit {nav Right-click > Refactor > Rename...} And rename it to reflect your new project. == Nice things to have == If you want to have your resulting JAR and dependencies copied to a Fiji subdirectory when you hit **install** You need to add this in your POM under the `<Properties>` tag `<scijava.app.subdirectory>plugins/MyFolder</scijava.app.subdirectory>` For this to work, and according to best practices, you need to create a `settings.xml` file in your `$HOME/.m2/` folder. The file does not exist initially, so you should create it and then add the following. ``` <settings> <profiles> <profile> <id>imagej</id> <activation> <file> <exists>C:/Fiji-Dev/</exists> </file> </activation> <properties> <scijava.app.directory>C:/Fiji-Dev/</scijava.app.directory> <delete.other.versions>true</delete.other.versions> </properties> </profile> </profiles> </settings> ``` (This will now be applied to all your projects involving ImageJ) Change the location of the Fiji installation (here `C:/Fiji-Dev/`)