Phriction Projects Wikis Bioimaging And Optics Platform Image Processing ImageJ/Fiji ijab-BIOP Channel Tools History Version 5 vs 6
Version 5 vs 6
Version 5 vs 6
Edits
Edits
- Edit by oburri, Version 6
- Jan 26 2018 14:32
- ·englishification
- Edit by romainGuiet, Version 5
- Jan 26 2018 14:23
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Edit Older Version 5... | Edit Older Version 6... |
Content Changes
Content Changes
=BIOP Channel Tools=
{F5942397, size=full, float, layout=right}
This ActionBar may be of some help to :
- set **LookUp Table** (LUT, ie false colors of the channels)
- set **Brightness & Contrast** of the current image or of a whole folder.
- create //complexe// **Montage Image** of the channels
Each modification can be applied indiviually on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
in each section:
- **LookUp Table Modification**
- **Brightness & Contrast Modification**
- **Montage Settings**
Otherwise modification(s) can be applied together (if previously defined ) using the section `All at once...` on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
(IMPORTANT) An image should be open so the program knows how much channel you have to process.
(NOTE) It may be obvious BUT processed images should have the same number of channels and come from the same batch (staining, acquisition... )
=1.Parameters =
Parameters are visible in an independant window.
They can be saved as a text file {key Save_Parameters}
or load to be reused {key Load_Parameters}
{F5942572, size=full}
=2.LookUp Table Modification=
==2.a.Channels LUT selection ==
{F5942669, size=full}
==2.b.Current Image ==
{F5942763, size=full}
==2.c.Folder ==
{F5942755, size=full}
=3.Brightness & Contrast Modification=
==3.a.B&C Selection ==
{F5942927, size=full}
==3.b.Current Image ==
Please c.f. 2.b
==3.c.Folder ==
Please c.f. 3.b
=4.Montage Settings=
Many options are available, please find here (just) some examples.
==4.a.Default ==
{F5942995, size=full}
==4.b. Move scale bar ==
{F5943013, size=full}
==4.c. Montage Border - Space between images ==
{F5943029, size=full}
==4.d. Make a square Montage ==
{F5943050, size=full}
==4.e. Individual Channel with Gray LUT ==
{F5943075, size=full}
==4.f. Advanced Montage ==
{F5943111, size=full}
==4.g. Add Legend ==
{F5943137, size=full}
=BIOP Channel Tools=
{F5942397, size=full, float, layout=right}
This ActionBar can:
- set **LookUp Tables** (LUT, ie false colors of the channels) for each channel
- set **Brightness & Contrast** of the current image or of a whole folder for each channel.
- create a //complex// **Montage Image** of the channels
Each modification can be applied indiviually on :
- the current image {key Apply_to_image}
- a defined folder {key Apply_to_Folder...}
for each section:
- **LookUp Table Modification**
- **Brightness & Contrast Modification**
- **Montage Settings**
Otherwise modification(s) can be applied together (if previously defined ) using the section `All at once...` on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
(IMPORTANT) An image should be open so the program knows how many channels there are to process.
(NOTE) It may be obvious, BUT processed images should have the same number of channels and come from the same batch (staining, acquisition... )
=1.Parameters =
Parameters are visible in an independent window.
They can be saved as a text file {key Save_Parameters}
and loaded to be reused {key Load_Parameters}
{F5942572, size=full}
=2.LookUp Table Modification=
==2.a.Channels LUT selection ==
{F5942669, size=full}
==2.b.Current Image ==
{F5942763, size=full}
==2.c.Folder ==
{F5942755, size=full}
=3.Brightness & Contrast Modification=
==3.a.B&C Selection ==
{F5942927, size=full}
==3.b.Current Image ==
Please c.f. 2.b
==3.c.Folder ==
Please c.f. 3.b
=4.Montage Settings=
Many options are available, please find here (just) some examples.
==4.a.Default ==
{F5942995, size=full}
==4.b. Move scale bar ==
{F5943013, size=full}
==4.c. Montage Border - Space between images ==
{F5943029, size=full}
==4.d. Make a square Montage ==
{F5943050, size=full}
==4.e. Individual Channel with Gray LUT ==
{F5943075, size=full}
==4.f. Advanced Montage ==
{F5943111, size=full}
==4.g. Add Legend ==
{F5943137, size=full}
=BIOP Channel Tools=
{F5942397, size=full, float, layout=right}
This ActionBar may be of some help to :can:
- set **LookUp Tables** (LUT, ie false colors of the channels) for each channel
- set **Brightness & Contrast** of the current image or of a whole folder for each channel.
- create a //complexe//// **Montage Image** of the channels
Each modification can be applied indiviually on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
infor each section:
- **LookUp Table Modification**
- **Brightness & Contrast Modification**
- **Montage Settings**
Otherwise modification(s) can be applied together (if previously defined ) using the section `All at once...` on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
(IMPORTANT) An image should be open so the program knows how muchmany channel you havs there are to process.
(NOTE) It may be obvious, BUT processed images should have the same number of channels and come from the same batch (staining, acquisition... )
=1.Parameters =
Parameters are visible in an independaent window.
They can be saved as a text file {key Save_Parameters}
orand loadded to be reused {key Load_Parameters}
{F5942572, size=full}
=2.LookUp Table Modification=
==2.a.Channels LUT selection ==
{F5942669, size=full}
==2.b.Current Image ==
{F5942763, size=full}
==2.c.Folder ==
{F5942755, size=full}
=3.Brightness & Contrast Modification=
==3.a.B&C Selection ==
{F5942927, size=full}
==3.b.Current Image ==
Please c.f. 2.b
==3.c.Folder ==
Please c.f. 3.b
=4.Montage Settings=
Many options are available, please find here (just) some examples.
==4.a.Default ==
{F5942995, size=full}
==4.b. Move scale bar ==
{F5943013, size=full}
==4.c. Montage Border - Space between images ==
{F5943029, size=full}
==4.d. Make a square Montage ==
{F5943050, size=full}
==4.e. Individual Channel with Gray LUT ==
{F5943075, size=full}
==4.f. Advanced Montage ==
{F5943111, size=full}
==4.g. Add Legend ==
{F5943137, size=full}
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