Merge branch 'master' into features/pybind11
0e4984f5a64d
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Authored by richart on Jun 15 2019, 18:24.

Description

Merge branch 'master' into features/pybind11

Details

Committed

Jun 15 2019, 18:24

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

Parents

rAKA5d2dc82607de: Bug fix in the createElementGroups function
rAKA1db43774e5c0: renaming a file

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richart committed rAKA0e4984f5a64d: Merge branch 'master' into features/pybind11 (authored by richart).Jun 15 2019, 18:24

Merged Changes

Commit	Author	Details	Committed
5d2dc82607de	richart	Bug fix in the createElementGroups function	Jun 13 2019
c7e89d5fc02b	richart	Version change	Jun 13 2019
788ec250fa23	richart	Fixing bugs in parallel:	Jun 12 2019
f2382b4ee542	richart	Make it compatible with the new versions of google-test	Jun 12 2019
36cb05800fb2	richart	Compiling with clang with -fsanitize=memory	Jun 12 2019
f6f78a8e1f57	richart	Bug fix in cohesive elements	Jun 5 2019
1308f870eb08	richart	Repairing some swig things	Jun 5 2019
69c3f4c90ff0	richart	Merge branch 'master' into features/petsc	Jun 5 2019
aa8c5c4077ce	richart	Minor bug fixes	Jun 5 2019
d77e9ccf0452	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Jun 4 2019
7a04471d3e4d	richart	Bug fix in the MSH reader version 4	Jun 2 2019
b1971f0dd3a7	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	May 31 2019
e8875aefc8da	anciaux/richart	correct the construction of the element filter with ek_regular	May 31 2019
e6acdd6c5042	gallyamov/richart	Correction of the default element types within element_type_map:	May 31 2019
8a8cbaa53817	richart	Few modifications	May 31 2019
df7dd4dc2abc	richart	Update on mesh_io_msh read and write	May 29 2019
fddfb5094d24	richart	Update for latest findcgal.cmake	May 21 2019
84880d975de9	richart	Modified MSH reader for version 4.1 of the files	May 21 2019
c992924e0405	richart	Reactivating anisotropic patch tests	May 14 2019
c42b7b3e4d52	richart	Bug fix in material anisotropic	May 14 2019
7c6724f81ef6	richart	Correction in transform iterators	Apr 23 2019
29ce3cc1f3a1	richart	Adding dof manager tests for petsc	Apr 23 2019
1e093d42f748	richart	dynamic_cast -> as_type	Apr 5 2019
72c0214a7b7a	richart	PETSc dynamic solver	Apr 5 2019
de3632b9a117	richart	Removed small tweaks made it more stable by copying the profiles	Mar 27 2019
0183db140277	richart	First correct solution obtained with PETSc	Mar 27 2019
82efd2d855ec	richart	refactoring some assembly code	Mar 13 2019
2ff5e44cc57d	richart	This seams to work to assemble with multiple dofs and in parallel (needs a bit…	Mar 7 2019
1768db555b92	richart	missing mesh for test dof_manager	Feb 26 2019
7c46a0ebaaaa	richart	communicator test	Feb 26 2019
91bf9f361630	richart	oversubscribe	Feb 26 2019
89582c779053	richart	Adding modules for debug	Feb 26 2019
0caf92148c1b	richart	Refactoring code between dof_managers	Feb 26 2019
449964d7deb7	richart	namespacing the type traits	Jan 30 2019
ff0b937e9de3	richart	Moving models common tests in a subfolder	Jan 30 2019
d3fcb3f40e61	richart	Working start point	Jan 6 2019
8a5df0c6141d	richart	Bug fix in SolverVector	Jan 3 2019
05a352d13d99	richart	PETSc compiles adding SolverVector	Jan 2 2019
bb1dc4591df5	richart	Bug fixing some tests + sanitizing them	Dec 30 2018
ef8b48beb2fc	richart	Scoping more enums	Dec 30 2018
926d81321873	richart	DOFManagerPETSc almost compiling	Dec 28 2018
8d21af83eceb	richart	Bug fix in petsc detection	Dec 28 2018
08a4aeef80c5	richart	advancing in the petsc dof manager	Dec 28 2018
81e90b9978ef	richart	updating the matrix definition	Dec 28 2018
08b1837389c4	richart	Scoping some enums	Dec 28 2018
d41cf25de0e0	richart	Long overdue cleaning in the model folder	Dec 28 2018
ec18546f5fb3	richart	Updating FindPETSc	Dec 28 2018
7237f444b33e	richart	adding bool as a mesh_data	Dec 28 2018

Changes (471)
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		Path
M		CMakeLists.txt
M		VERSION
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
D		cmake/Modules/CorrectWindowsPaths.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/Modules/FindPETSc.cmake
D		cmake/Modules/FindPackageMultipass.cmake
D		cmake/Modules/ResolveCompilerPaths.cmake
A		cmake/sanitize-blacklist.txt
M		doc/doxygen/CMakeLists.txt
M		doc/manual/manual-solidmechanicsmodel.tex
M		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
M		examples/embedded/embedded.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
M		examples/python/custom-material/bi-material.py
M		examples/python/plate-hole/plate.py
M		examples/static/static.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_inline_impl.cc
M		extra_packages/igfem/src/non_local_manager_igfem.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
M		extra_packages/igfem/test/patch_tests/test_interface_position.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact_inline_impl.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		packages/cgal.cmake
M		packages/core.cmake
M		packages/implicit.cmake
M		packages/mpi.cmake
M		packages/mumps.cmake
M		packages/petsc.cmake
D		packages/python_interpeter.cmake
M		packages/solid_mechanics.cmake
M		python/CMakeLists.txt
M		python/py_aka_array.hh
V		python/{py_aka_boundary_conditions.cc → py_boundary_conditions.cc}
D		python/py_aka_boundary_conditions.hh
M		python/py_aka_common.cc
M		python/py_aka_common.hh
V		python/{py_aka_fe_engine.cc → py_fe_engine.cc}
D		python/py_aka_fe_engine.hh
V		python/{py_aka_heat_transfer_model.cc → py_heat_transfer_model.cc}
D		python/py_aka_heat_transfer_model.hh
V		python/{py_aka_material.cc → py_material.cc}
D		python/py_aka_material.hh
V		python/{py_aka_mesh.cc → py_mesh.cc}
D		python/py_aka_mesh.hh
V		python/{py_aka_model.cc → py_model.cc}
V		python/{py_aka_model.hh → py_model.hh}
V		python/{py_aka_parser.cc → py_parser.cc}
V		python/{py_aka_parser.hh → py_parser.hh}
V		python/{py_aka_solid_mechanics_model.cc → py_solid_mechanics_model.cc}
D		python/py_aka_solid_mechanics_model.hh
V		python/{py_aka_solid_mechanics_model_cohesive.cc → py_solid_mechanics_model_cohesive.cc}
D		python/py_aka_solid_mechanics_model_cohesive.hh
M		python/py_akantu.cc
A		python/py_akantu.hh
V		python/{py_boundary_conditions.cc ← py_aka_boundary_conditions.cc}
A		python/py_boundary_conditions.hh
V		python/{py_fe_engine.cc ← py_aka_fe_engine.cc}
A		python/py_fe_engine.hh
V		python/{py_heat_transfer_model.cc ← py_aka_heat_transfer_model.cc}
A		python/py_heat_transfer_model.hh
V		python/{py_material.cc ← py_aka_material.cc}
A		python/py_material.hh
V		python/{py_mesh.cc ← py_aka_mesh.cc}
A		python/py_mesh.hh
V		python/{py_model.cc ← py_aka_model.cc}
V		python/{py_model.hh ← py_aka_model.hh}
V		python/{py_parser.cc ← py_aka_parser.cc}
V		python/{py_parser.hh ← py_aka_parser.hh}
V		python/{py_solid_mechanics_model.cc ← py_aka_solid_mechanics_model.cc}
A		python/py_solid_mechanics_model.hh
V		python/{py_solid_mechanics_model_cohesive.cc ← py_aka_solid_mechanics_model_cohesive.cc}
A		python/py_solid_mechanics_model_cohesive.hh
M		src/CMakeLists.txt
M		src/common/aka_array.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
M		src/common/aka_enum_macros.hh
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_extern.cc
M		src/common/aka_fwd.hh
M		src/common/aka_iterators.hh
M		src/common/aka_types.hh
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_compute.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry_tmpl.hh
M		src/io/parser/parser.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_iterators.hh
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter_inline_impl.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater_inline_impl.cc
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_utils.cc
V		src/model/{ → common/boundary_condition}/boundary_condition.hh
V		src/model/{ → common/boundary_condition}/boundary_condition_functor.hh
V		src/model/{ → common/boundary_condition}/boundary_condition_functor_inline_impl.cc
V		src/model/{ → common/boundary_condition}/boundary_condition_tmpl.hh
A	(dir)	src/model/common/boundary_condition/
V		src/model/{common/boundary_condition ← }/boundary_condition.hh
V		src/model/{common/boundary_condition ← }/boundary_condition_functor.hh
V		src/model/{common/boundary_condition ← }/boundary_condition_functor_inline_impl.cc
V		src/model/{common/boundary_condition ← }/boundary_condition_tmpl.hh
A	(dir)	src/model/common/dof_manager/
V		src/model/{common/dof_manager ← }/dof_manager.cc
V		src/model/{common/dof_manager ← }/dof_manager.hh
A		src/model/common/dof_manager/dof_manager_default.cc
V		src/model/{common/dof_manager ← }/dof_manager_default.hh
P		src/model/common/dof_manager/dof_manager_default_inline_impl.cc Copied from src/model/non_linear_solver_default.hh
A		src/model/common/dof_manager/dof_manager_inline_impl.cc
A		src/model/common/dof_manager/dof_manager_petsc.cc
A		src/model/common/dof_manager/dof_manager_petsc.hh
A	(dir)	src/model/common/integration_scheme/
V		src/model/{common ← }/integration_scheme/generalized_trapezoidal.cc
V		src/model/{common ← }/integration_scheme/generalized_trapezoidal.hh
V		src/model/{common ← }/integration_scheme/integration_scheme.cc
V		src/model/{common ← }/integration_scheme/integration_scheme.hh
V		src/model/{common ← }/integration_scheme/integration_scheme_1st_order.cc
V		src/model/{common ← }/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{common ← }/integration_scheme/integration_scheme_2nd_order.cc
V		src/model/{common ← }/integration_scheme/integration_scheme_2nd_order.hh
V		src/model/{common ← }/integration_scheme/newmark-beta.cc
V		src/model/{common ← }/integration_scheme/newmark-beta.hh
V		src/model/{common ← }/integration_scheme/pseudo_time.cc
V		src/model/{common ← }/integration_scheme/pseudo_time.hh
V		src/model/{common ← }/model_solver.cc
V		src/model/{common ← }/model_solver.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.cc
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base_inline_impl.cc
D		src/model/common/neighborhoods_criterion_evaluation
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
V		src/model/common/{ → non_local_toolbox}/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
A	(dir)	src/model/common/non_linear_solver/
V		src/model/{common/non_linear_solver ← }/non_linear_solver.cc
P		src/model/common/non_linear_solver/non_linear_solver.hh Copied from src/model/non_linear_solver.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_default.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_linear.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_linear.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_lumped.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_lumped.hh
V		src/model/{common/non_linear_solver ← }/non_linear_solver_newton_raphson.cc
V		src/model/{common/non_linear_solver ← }/non_linear_solver_newton_raphson.hh
A		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
V		src/model/{common/non_linear_solver/non_linear_solver_petsc.hh ← non_linear_solver.hh}
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.cc
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.hh
V		src/model/common/{non_local_toolbox ← }/neighborhood_base_inline_impl.cc
A	(dir)	src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
V		src/model/common/{non_local_toolbox ← }/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
V		src/model/{common ← }/solver_callback.cc
V		src/model/{common ← }/solver_callback.hh
A	(dir)	src/model/common/time_step_solvers/
V		src/model/{common ← }/time_step_solvers/time_step_solver.cc
V		src/model/{common/time_step_solvers ← }/time_step_solver.hh
V		src/model/{common ← }/time_step_solvers/time_step_solver_default.cc
V		src/model/{common ← }/time_step_solvers/time_step_solver_default.hh
V		src/model/{common ← }/time_step_solvers/time_step_solver_default_explicit.hh
V		src/model/{ → common/dof_manager}/dof_manager.cc
V		src/model/{ → common/dof_manager}/dof_manager.hh
D		src/model/dof_manager_default.cc
V		src/model/{ → common/dof_manager}/dof_manager_default.hh
D		src/model/dof_manager_default_inline_impl.cc
D		src/model/dof_manager_inline_impl.cc
D		src/model/dof_manager_petsc.cc
D		src/model/dof_manager_petsc.hh
M		src/model/heat_transfer/heat_transfer_model.cc
D		src/model/integration_scheme
V		src/model/{ → common}/integration_scheme/generalized_trapezoidal.cc
V		src/model/{ → common}/integration_scheme/generalized_trapezoidal.hh
V		src/model/{ → common}/integration_scheme/integration_scheme.cc
V		src/model/{ → common}/integration_scheme/integration_scheme.hh
V		src/model/{ → common}/integration_scheme/integration_scheme_1st_order.cc
V		src/model/{ → common}/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{ → common}/integration_scheme/integration_scheme_2nd_order.cc
V		src/model/{ → common}/integration_scheme/integration_scheme_2nd_order.hh
V		src/model/{ → common}/integration_scheme/newmark-beta.cc
V		src/model/{ → common}/integration_scheme/newmark-beta.hh
V		src/model/{ → common}/integration_scheme/pseudo_time.cc
V		src/model/{ → common}/integration_scheme/pseudo_time.hh
M		src/model/model.cc
M		src/model/model_inline_impl.cc
V		src/model/{ → common}/model_solver.cc
V		src/model/{ → common}/model_solver.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver.cc
P		src/model/non_linear_solver.hh Deleted after being copied to multiple locations: src/model/common/non_linear_solver/non_linear_solver.hh src/model/common/non_linear_solver/non_linear_solver_petsc.hh
D		src/model/non_linear_solver_callback.hh
P		src/model/non_linear_solver_default.hh Deleted after being copied to multiple locations: src/model/common/dof_manager/dof_manager_default_inline_impl.cc src/model/common/non_linear_solver/non_linear_solver_default.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_linear.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_linear.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_lumped.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_lumped.hh
V		src/model/{ → common/non_linear_solver}/non_linear_solver_newton_raphson.cc
V		src/model/{ → common/non_linear_solver}/non_linear_solver_newton_raphson.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
V		src/model/{ → common}/solver_callback.cc
V		src/model/{ → common}/solver_callback.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
V		src/model/{ → common/time_step_solvers}/time_step_solver.hh
D		src/model/time_step_solvers
V		src/model/{ → common}/time_step_solvers/time_step_solver.cc
V		src/model/{ → common}/time_step_solvers/time_step_solver_default.cc
V		src/model/{ → common}/time_step_solvers/time_step_solver_default.hh
V		src/model/{ → common}/time_step_solvers/time_step_solver_default_explicit.hh
D		src/model/time_step_solvers/time_step_solver_default_solver_callback.hh
M		src/solver/petsc_wrapper.hh
M		src/solver/solver_petsc.cc
M		src/solver/solver_petsc.hh
A		src/solver/solver_vector.hh
A		src/solver/solver_vector_default.cc
A		src/solver/solver_vector_default.hh
A		src/solver/solver_vector_default_tmpl.hh
A		src/solver/solver_vector_distributed.cc
A		src/solver/solver_vector_distributed.hh
A		src/solver/solver_vector_petsc.cc
A		src/solver/solver_vector_petsc.hh
M		src/solver/sparse_matrix.cc
P		src/solver/sparse_matrix.hh Copied to src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_matrix_aij.cc
M		src/solver/sparse_matrix_aij.hh
M		src/solver/sparse_matrix_aij_inline_impl.cc
M		src/solver/sparse_matrix_petsc.cc
P		src/solver/sparse_matrix_petsc.hh Copied from src/solver/sparse_matrix.hh
M		src/solver/sparse_solver_inline_impl.cc
M		src/solver/sparse_solver_mumps.cc
M		src/synchronizer/communicator.cc
M		src/synchronizer/communicator.hh
M		src/synchronizer/communicator_dummy_inline_impl.cc
M		src/synchronizer/communicator_inline_impl.hh
M		src/synchronizer/communicator_mpi_inline_impl.cc
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.cc
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer_impl_tmpl.hh
M		test/test_common/test_array.cc
M		test/test_fe_engine/test_fe_engine_fixture.hh
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_structural.cc
M		test/test_fe_engine/test_fe_engine_structural_fixture.hh
M		test/test_fe_engine/test_gradient.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_fe_engine/test_inverse_map.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_model/CMakeLists.txt
M		test/test_model/patch_tests/CMakeLists.txt
V		test/test_model/patch_tests/data/{material_anisotropic.dat → material_anisotropic_3.dat}
A		test/test_model/patch_tests/data/material_anisotropic_1.dat
A		test/test_model/patch_tests/data/material_anisotropic_2.dat
V		test/test_model/patch_tests/data/{material_anisotropic_3.dat ← material_anisotropic.dat}
A		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
D		test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
M		test/test_model/patch_tests/patch_test_linear_elastic_implicit.cc
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_static.cc
M		test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
M		test/test_model/patch_tests/test_lumped_mass.cc
M		test/test_model/patch_tests/test_patch_linear_elastic_static.py
M		test/test_model/patch_tests/test_patch_linear_heat_transfer_static.py
A	(dir)	test/test_model/test_common/
A		test/test_model/test_common/CMakeLists.txt
A		test/test_model/test_common/mesh.geo
A		test/test_model/test_common/test_dof_manager.cc
A	(dir)	test/test_model/test_common/test_model_solver/
V		test/test_model/{test_common ← }/test_model_solver/CMakeLists.txt
V		test/test_model/{test_common ← }/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{test_common ← }/test_model_solver/test_dof_manager_default.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver.cc
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver.py
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic.cc
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic.py
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic_explicit.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_dynamic_implicit.verified
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.verified
P		test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified Copied from test/test_model/test_model_solver/test_model_solver.verified
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver_my_model.hh
V		test/test_model/{test_common/test_model_solver/test_model_solver_petsc.verified ← test_model_solver/test_model_solver.verified}
A	(dir)	test/test_model/test_common/test_non_local_toolbox/
V		test/test_model/{test_common ← }/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{test_common ← }/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/material.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_avg.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_weight_computation.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/my_model.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/pair_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.geo
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/plot_neighborhoods.py
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_neighborhood_base.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_neighborhood_base.verified
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_pair_computation.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.verified
D		test/test_model/test_model_solver
V		test/test_model/{ → test_common}/test_model_solver/CMakeLists.txt
V		test/test_model/{ → test_common}/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{ → test_common}/test_model_solver/test_dof_manager_default.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver.cc
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver.py
P		test/test_model/test_model_solver/test_model_solver.verified Deleted after being copied to multiple locations: test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified test/test_model/test_common/test_model_solver/test_model_solver_petsc.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic.cc
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic.py
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic_explicit.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_dynamic_implicit.verified
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver_my_model.hh
D		test/test_model/test_non_local_toolbox
V		test/test_model/{ → test_common}/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{ → test_common}/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/material.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_avg.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_weight_computation.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/my_model.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/pair_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.geo
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/plot_neighborhoods.py
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_neighborhood_base.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_neighborhood_base.verified
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_pair_computation.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.verified
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/test_cohesive_intrinsic_impl.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_multi_material_elastic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
M		test/test_python_interface/CMakeLists.txt
A		test/test_python_interface/elastic.dat
A		test/test_python_interface/mesh_dcb_2d.geo
M		test/test_python_interface/test_common.cc
M		test/test_python_interface/test_pybind.py
M		test/test_solver/CMakeLists.txt
M		test/test_solver/test_petsc_matrix_profile.cc
M		test/test_solver/test_petsc_matrix_profile_parallel.cc
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/CMakeLists.txt
A		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc