Merge branch 'master' into release
74a41d6f0ef2
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Authored by richart on Jan 13 2016, 17:38.

Description

Merge branch 'master' into release

Details

Committed

Jan 13 2016, 17:38

Pushed

richart	Dec 6 2019, 13:35
richart	Dec 6 2019, 13:16
richart	Dec 6 2019, 12:16
richart	Dec 6 2019, 11:45
richart	Dec 5 2019, 22:54
richart	Dec 5 2019, 18:45

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rAKA7fd63db389df: Move some files for dependencies
rAKAdc302ed92c83: Merge branch 'master' into release

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richart committed rAKA74a41d6f0ef2: Merge branch 'master' into release (authored by richart).Jan 13 2016, 17:38

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
7fd63db389df	richart	Move some files for dependencies	Jan 13 2016
3bb1a6eff112	richart	missing file for python test	Jan 13 2016
4ad2b113c443	richart	Bug fix for insertion along physical surfaces	Jan 13 2016
a4f3d57ac39f	richart	Allowing to have python tests	Jan 13 2016
c2a7d18eb1cb	richart	Adding a way to clean the parser for reread	Jan 13 2016
a1ff9a28c2f8	richart	Correction of MPI_Init to be able to use mpi4py	Jan 13 2016
b8d0f76aca4c	richart	Revert "wrong position of MPI_barrier call"	Jan 13 2016
fd9c1bfca6ce	richart	Merge branch 'master' of gitolite-richart:akantu	Jan 13 2016
5818e27cf649	fabarras	finalization of StaticSolver in finalize() method rather than clear()	Jan 13 2016
beda55d3ce6b	fabarras	wrong position of MPI_barrier call	Jan 13 2016
836f7ec36526	richart	Protected code to be able to compile without cohesive elements	Jan 13 2016
4ceb5223b8d3	richart	Made the message clearer in case no wrappers are present and cannot be generated	Jan 13 2016
81e7fe4e746b	richart	Revert "most inadequate FATAL_ERROR ever" or just you do not understand it	Jan 13 2016
c937ce36b65b	richart	Revert "fixed mpi problem with akantu"	Jan 13 2016
91ed8461338d	richart	Revert "distinction between clear() used before re-initialize() and finalize()…	Jan 13 2016
5003559dc5fe	richart	Merge branch 'master' of gitolite-richart:akantu	Jan 13 2016
ed18ca6fae40	richart	Changes to correct old problem of static libraries	Jan 13 2016
0070d60fe451	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Jan 12 2016
c335baffc5d5	corrado	added example for the use of the extrinsic cohesive method in implicit	Jan 12 2016
0621e8737879	corrado	implemented the constitutive law cohesive_linear_friction, inheriting from…	Jan 12 2016
066fde5d91e9	frerot	fixed test fail when nonzero exit code	Jan 12 2016
a20a316a5653	richart	treat the non 0 exit of tests in the test driver	Jan 12 2016
31baa449f8f1	fabarras	distinction between clear() used before re-initialize() and finalize() methods	Jan 7 2016
1d7e2d3c30c0	anciaux	fixed mpi problem with akantu	Jan 7 2016
1eed991f8578	fabarras	modifs to pass args to python initialize methods	Jan 7 2016
b3823577f014	fabarras	transforming a Scannor into a Scanner	Jan 6 2016
031bee2bc228	fabarras	issue in .tex generation with '\'	Jan 6 2016
0031ab5629c8	fabarras	most inadequate FATAL_ERROR ever	Jan 6 2016
27527ab5f8e7	fabarras	adding the very first test of python interface testing multiple initialize calls	Jan 6 2016
5df5f93568d9	fabarras	Freeing pointer to static member and setting their value to NULL in order to…	Jan 6 2016
64e10e9a43f6	fabarras	modifications to clear static Parser content	Jan 6 2016
dcb6e35e96d1	fabarras	swig modifications from Gabrielle project on cohesive elements	Jan 6 2016
9363a90b51cc	frerot	fixed manual not compiling	Jan 4 2016
b54eb50db774	frerot	added support for _triangle_6 elements for embedded model	Jan 4 2016
a7e5fa55078d	frerot	removed stray temporary file	Dec 23 2015
3c77b64d4c82	yilmaz	feengine chapter is opened in user manual. examples are given for interpolation…	Dec 21 2015
b3344dd1b9d6	corrado	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 21 2015
355bb2eb5356	corrado	modifications to the user manual related to ticket #98	Dec 21 2015
dfec593efad7	jcho	adding explanations about non-local damage models	Dec 18 2015
3bfc4b872942	Valentine	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 18 2015
200e9204e52f	Valentine	pour pouvoir pusher	Dec 18 2015
b34da39d8272	fabarras	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 18 2015
591c9001eda2	fabarras	[closes #111]	Dec 18 2015
fa1ab379485d	Valentine	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 18 2015
8525404f6626	Valentine	comments for tickets 79	Dec 18 2015
bc158cdfbd51	yilmaz	some doxygen comments (ticket 96)	Dec 18 2015
facbca4a1976	Lucas Frérot	added doc for parser + aka_blas_lapack.hh	Dec 17 2015
5c2dd6f3479e	Aurelia Cuba Ramos	resolution of tickets 118, 115, 122, 102, 80, bug fixes in non-local	Dec 16 2015
fd65bfe537f1	Aurelia Cuba Ramos	Merge branch 'master' of lsmssrv1.epfl.ch:akantu	Dec 16 2015
a339de614273	Aurelia Cuba Ramos	testing of non-local damage completed	Dec 16 2015

Changes (932)
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This commit is very large. Load each file individually.

		Path
A		.clang-format
A		.gitignore
A		.gitmodules
M		AUTHORS
M		CMakeLists.txt
D		Makefile
M		VERSION
M		cmake/AkantuCPack.cmake
M		cmake/AkantuConfig.cmake.in
A		cmake/AkantuExamplesMacros.cmake
M		cmake/AkantuInstall.cmake
M		cmake/AkantuMacros.cmake
A		cmake/AkantuPackagesSystem.cmake
D		cmake/AkantuTestAndExamples.cmake
A		cmake/AkantuTestsMacros.cmake
M		cmake/AkantuUse.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
A		cmake/Modules/CMakePackagesSystemGlobalFunctions.cmake
A		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/Modules/FindMumps.cmake
A		cmake/Modules/FindNumpy.cmake
M		cmake/Modules/FindPETSc.cmake
M		cmake/Modules/FindPTScotch.cmake
A		cmake/Modules/FindScaLAPACK.cmake
M		cmake/Modules/FindScotch.cmake
M		cmake/akantu_diff.sh
A		cmake/akantu_test_driver.sh
A		cmake/akantu_test_environement.sh.in
M		doc/CMakeLists.txt
A		doc/coding_convention/akantu-input-mode.el
M		doc/doxygen/akantu.dox.in
M		doc/manual/CMakeLists.txt
M		doc/manual/manual-appendix-elements.tex
M		doc/manual/manual-appendix-materials-cohesive.tex
M		doc/manual/manual-appendix-materials.tex
M		doc/manual/manual-bibliography.bib
M		doc/manual/manual-cohesive_elements.tex
M		doc/manual/manual-cohesive_elements_insertion.tex
M		doc/manual/manual-cohesive_laws.tex
M		doc/manual/manual-constitutive-laws-non_local.tex
M		doc/manual/manual-constitutive-laws.tex
M		doc/manual/manual-elements.tex
A		doc/manual/manual-feengine.tex
M		doc/manual/manual-gettingstarted.tex
M		doc/manual/manual-heattransfermodel.tex
M		doc/manual/manual-io.tex
M		doc/manual/manual-parallel.tex
M		doc/manual/manual-solidmechanicsmodel.tex
M		doc/manual/manual-structuralmechanicsmodel-elements.tex
M		doc/manual/manual-structuralmechanicsmodel.tex
M		doc/manual/manual.sty
M		doc/manual/manual.tex
A		doc/manual/version-definition.tex.in
M		examples/CMakeLists.txt
P	(dir)	examples/boundary_conditions/ Copied to examples/boundary_conditions/predefined_BC
P		examples/boundary_conditions/CMakeLists.txt Copied to examples/boundary_conditions/predefined_BC/CMakeLists.txt
P		examples/boundary_conditions/material.dat Deleted after being copied to multiple locations: examples/boundary_conditions/predefined_BC/material.dat examples/boundary_conditions/user_defined_BC/material.dat
V		examples/boundary_conditions/{ → predefined_BC}/plate.cc
P	(dir)	examples/boundary_conditions/predefined_BC/ Copied from examples/boundary_conditions
P		examples/boundary_conditions/predefined_BC/CMakeLists.txt Copied from examples/boundary_conditions/CMakeLists.txt
P		examples/boundary_conditions/predefined_BC/material.dat Copied from examples/boundary_conditions/material.dat
V		examples/boundary_conditions/{predefined_BC ← }/plate.cc
V		examples/boundary_conditions/{predefined_BC ← }/square.geo
V		examples/boundary_conditions/{ → predefined_BC}/square.geo
A	(dir)	examples/boundary_conditions/user_defined_BC/
A		examples/boundary_conditions/user_defined_BC/CMakeLists.txt
A		examples/boundary_conditions/user_defined_BC/complex_boundary_condition.cc
A		examples/boundary_conditions/user_defined_BC/fine_mesh.geo
V		examples/boundary_conditions/{user_defined_BC ← }/material.dat
M		examples/cohesive_element/CMakeLists.txt
A	(dir)	examples/cohesive_element/cohesive_extrinsic_implicit/
A		examples/cohesive_element/cohesive_extrinsic_implicit/CMakeLists.txt
A		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
A		examples/cohesive_element/cohesive_extrinsic_implicit/dcb_2d.geo
A		examples/cohesive_element/cohesive_extrinsic_implicit/material.dat
A	(dir)	examples/embedded/
A		examples/embedded/CMakeLists.txt
A		examples/embedded/concrete.geo
A		examples/embedded/embedded.cc
A		examples/embedded/material.dat
A		examples/embedded/reinforcement.geo
M		examples/explicit/explicit_dynamic.cc
A	(dir)	examples/io/
A		examples/io/CMakeLists.txt
A	(dir)	examples/io/dumper/
A		examples/io/dumper/CMakeLists.txt
A		examples/io/dumper/dumpable_interface.cc
A		examples/io/dumper/dumper_low_level.cc
A		examples/io/dumper/locomotive_tools.cc
A		examples/io/dumper/locomotive_tools.hh
A		examples/io/dumper/swiss_train.geo
A	(dir)	examples/io/parser/
A		examples/io/parser/CMakeLists.txt
A		examples/io/parser/example_parser.cc
A		examples/io/parser/input_file.dat
A		examples/io/parser/swiss_cheese.geo
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.cc
M		examples/new_material/new_local_material.cc
A	(dir)	extra_packages/
A	(sub)	extra_packages/extra-materials
A	(sub)	extra_packages/igfem
A	(sub)	extra_packages/parallel-cohesive-element
A	(sub)	extra_packages/phase-field
A	(sub)	extra_packages/students-extra-package
A	(sub)	extra_packages/traction-at-split-node-contact
D		packages/00_core.cmake
D		packages/00_core_cxx11.cmake
D		packages/00_documentation_doxygen.cmake
D		packages/00_documentation_manual.cmake
D		packages/10_heat_transfer.cmake
D		packages/10_structural_mechanics.cmake
D		packages/20_cohesive_element.cmake
D		packages/20_contact.cmake
D		packages/25_damage_non_local.cmake
D		packages/40_optimization.cmake
D		packages/50_implicit.cmake
D		packages/50_parallel.cmake
D		packages/80_cpparray.cmake
D		packages/80_mpi.cmake
D		packages/80_nlopt.cmake
D		packages/85_mumps.cmake
D		packages/89_lapack.cmake
D		packages/90_blas.cmake
D		packages/90_iohelper.cmake
D		packages/90_scotch.cmake
A		packages/blackdynamite.cmake
A		packages/blas.cmake
A		packages/boost.cmake
A		packages/cgal.cmake
A		packages/cohesive_element.cmake
A		packages/contact.cmake
A		packages/core.cmake
A		packages/core_cxx11.cmake
A		packages/cpparray.cmake
A		packages/damage_non_local.cmake
A		packages/documentation_doxygen.cmake
A		packages/documentation_manual.cmake
A		packages/embedded.cmake
A		packages/heat_transfer.cmake
A		packages/implicit.cmake
A		packages/iohelper.cmake
A		packages/lapack.cmake
A		packages/mpi.cmake
A		packages/mumps.cmake
A		packages/nlopt.cmake
A		packages/numpy.cmake
A		packages/optimization.cmake
A		packages/parallel.cmake
A		packages/petsc.cmake
A		packages/python_interface.cmake
A		packages/pythonlibs.cmake
A		packages/qview.cmake
A		packages/scalapack.cmake
A		packages/scotch.cmake
A		packages/structural_mechanics.cmake
A	(dir)	python/
A		python/CMakeLists.txt
A	(dir)	python/swig/
A		python/swig/aka_array.i
A		python/swig/aka_common.i
A		python/swig/aka_csr.i
A		python/swig/akantu.i
A		python/swig/heat_transfer_model.i
A		python/swig/load_functions.i
A		python/swig/mesh.i
A		python/swig/mesh_utils.i
A		python/swig/model.i
A		python/swig/numpy.i
A		python/swig/solid_mechanics_model.i
A		python/swig/solid_mechanics_model_cohesive.i
A		python/swig/structural_mechanics_model.i
M		src/CMakeLists.txt
M		src/common/aka_array.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_blas_lapack.hh
M		src/common/aka_bounding_box.cc
D		src/common/aka_ci_string.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
M		src/common/aka_config.hh.in
A		src/common/aka_element_classes_info.hh.in
A		src/common/aka_element_classes_info_inline_impl.cc
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_event_handler_manager.hh
M		src/common/aka_extern.cc
M		src/common/aka_fwd.hh
M		src/common/aka_geometry.hh
M		src/common/aka_grid_dynamic.hh
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_random_generator.hh
M		src/common/aka_static_memory.cc
M		src/common/aka_static_memory_inline_impl.cc
M		src/common/aka_types.hh
M		src/fe_engine/cohesive_element.cc
M		src/fe_engine/cohesive_element.hh
M		src/fe_engine/element_class.cc
M		src/fe_engine/element_class.hh
M		src/fe_engine/element_class_structural.hh
M		src/fe_engine/element_class_tmpl.hh
A		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
M		src/fe_engine/element_classes/element_class_hexahedron_8_inline_impl.cc
A		src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
M		src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
M		src/fe_engine/element_classes/element_class_quadrangle_4_inline_impl.cc
M		src/fe_engine/element_classes/element_class_quadrangle_8_inline_impl.cc
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.cc
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_cohesive.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_struct.hh
D		src/fe_engine/geometrical_data_tmpl.hh
M		src/fe_engine/geometrical_element.cc
M		src/fe_engine/integration_element.cc
A		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/fe_engine/interpolation_element_tmpl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_functions_inline_impl.cc
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_inline_impl.cc
M		src/fe_engine/shape_linked.hh
M		src/fe_engine/shape_linked_inline_impl.cc
A	(dir)	src/geometry/
A	(dir)	src/geometry/aabb_primitives/
A		src/geometry/aabb_primitives/aabb_primitive.cc
A		src/geometry/aabb_primitives/aabb_primitive.hh
A		src/geometry/aabb_primitives/line_arc.hh
A		src/geometry/aabb_primitives/tetrahedron.hh
A		src/geometry/aabb_primitives/triangle.hh
A		src/geometry/geom_helper_functions.hh
A		src/geometry/mesh_abstract_intersector.hh
A		src/geometry/mesh_abstract_intersector_tmpl.hh
A		src/geometry/mesh_geom_abstract.hh
A		src/geometry/mesh_geom_common.hh
A		src/geometry/mesh_geom_factory.hh
A		src/geometry/mesh_geom_factory_tmpl.hh
A		src/geometry/mesh_geom_intersector.hh
A		src/geometry/mesh_geom_intersector_tmpl.hh
A		src/geometry/mesh_segment_intersector.hh
A		src/geometry/mesh_segment_intersector_tmpl.hh
A		src/geometry/mesh_sphere_intersector.hh
A		src/geometry/mesh_sphere_intersector_tmpl.hh
A		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable.hh
A		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
A		src/io/dumper/dumpable_iohelper.hh
M		src/io/dumper/dumper_compute.hh
D		src/io/dumper/dumper_connectivity_field.hh
M		src/io/dumper/dumper_element_iterator.hh
M		src/io/dumper/dumper_element_partition.hh
D		src/io/dumper/dumper_element_type.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_field.hh
M		src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_generic_elemental_field.hh
M		src/io/dumper/dumper_homogenizing_field.hh
A		src/io/dumper/dumper_internal_material_field.hh
M		src/io/dumper/dumper_iohelper.cc
M		src/io/dumper/dumper_iohelper.hh
D		src/io/dumper/dumper_iterator_helper.hh
D		src/io/dumper/dumper_material_internal_field.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/dumper/dumper_nodal_field.hh
A		src/io/dumper/dumper_quadrature_point_iterator.hh
D		src/io/dumper/dumper_quadrature_points_field.hh
M		src/io/dumper/dumper_type_traits.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_abaqus.cc
M		src/io/mesh_io/mesh_io_abaqus.hh
M		src/io/mesh_io/mesh_io_diana.cc
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parsable.cc
M		src/io/parser/parsable.hh
M		src/io/parser/parsable_tmpl.hh
M		src/io/parser/parser.cc
M		src/io/parser/parser.hh
A		src/io/parser/parser_grammar_tmpl.hh
A		src/io/parser/parser_input_files.cc
A		src/io/parser/parser_random.cc
A		src/io/parser/parser_real.cc
M		src/io/parser/parser_tmpl.hh
A		src/io/parser/parser_types.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_filter.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
A		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
A		src/mesh/mesh_events.hh
M		src/mesh/mesh_filter.hh
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.cc
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
A		src/mesh_utils/global_ids_updater.cc
A		src/mesh_utils/global_ids_updater.hh
A		src/mesh_utils/global_ids_updater_inline_impl.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
D		src/mesh_utils/mesh_pbc.cc
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/mesh_utils/mesh_utils_inline_impl.cc
A		src/mesh_utils/mesh_utils_pbc.cc
M		src/model/boundary_condition.hh
M		src/model/boundary_condition_functor.hh
M		src/model/boundary_condition_functor_inline_impl.cc
A		src/model/boundary_condition_python_functor.cc
A		src/model/boundary_condition_python_functor.hh
M		src/model/boundary_condition_tmpl.hh
A	(dir)	src/model/common/
A		src/model/common/neighborhood_base.cc
A		src/model/common/neighborhood_base.hh
A		src/model/common/neighborhood_base_inline_impl.cc
A	(dir)	src/model/common/neighborhoods_criterion_evaluation/
A		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
A		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
A		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
A	(dir)	src/model/common/non_local_toolbox/
A		src/model/common/non_local_toolbox/non_local_manager.cc
A		src/model/common/non_local_toolbox/non_local_manager.hh
A		src/model/common/non_local_toolbox/non_local_manager_inline_impl.cc
A		src/model/common/non_local_toolbox/non_local_neighborhood.hh
A		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
A		src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
A		src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.cc
A		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
D		src/model/contact_manager0.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/heat_transfer/heat_transfer_model_inline_impl.cc
M		src/model/integration_scheme/generalized_trapezoidal.hh
M		src/model/integration_scheme/generalized_trapezoidal_inline_impl.cc
M		src/model/model.cc
M		src/model/model.hh
M		src/model/model_inline_impl.cc
D		src/model/model_manager.cc
D		src/model/model_manager.hh
D		src/model/solid_mechanics/fragment_manager.cc
D		src/model/solid_mechanics/fragment_manager.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
D		src/model/solid_mechanics/material_list.hh
A		src/model/solid_mechanics/material_list.hh.in
D		src/model/solid_mechanics/material_random_internal.hh
M		src/model/solid_mechanics/material_selector.hh
M		src/model/solid_mechanics/material_selector_tmpl.hh
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_cohesive/cohesive_internal_field.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_bilinear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_exponential.hh
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear.hh
A		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.cc
A		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_fatigue.hh
A		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_friction.cc
A		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_friction.hh
A		src/model/solid_mechanics/materials/material_cohesive/constitutive_laws/material_cohesive_linear_inline_impl.cc
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.cc
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive.hh
M		src/model/solid_mechanics/materials/material_cohesive/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/materials/material_cohesive_includes.hh
A		src/model/solid_mechanics/materials/material_core_includes.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_non_local_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.hh
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
A	(dir)	src/model/solid_mechanics/materials/material_embedded/
A		src/model/solid_mechanics/materials/material_embedded/embedded_internal_field.hh
A		src/model/solid_mechanics/materials/material_embedded/material_embedded_includes.hh
A		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.cc
A		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
A		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_inline_impl.cc
A		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_template.hh
A		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_template_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
A		src/model/solid_mechanics/materials/material_non_local.cc
M		src/model/solid_mechanics/materials/material_non_local.hh
M		src/model/solid_mechanics/materials/material_non_local_includes.hh
M		src/model/solid_mechanics/materials/material_non_local_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
A	(dir)	src/model/solid_mechanics/materials/material_python/
A		src/model/solid_mechanics/materials/material_python/material_python.cc
A		src/model/solid_mechanics/materials/material_python/material_python.hh
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
M		src/model/solid_mechanics/materials/random_internal_field.hh
M		src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
D		src/model/solid_mechanics/materials/weight_function.cc
D		src/model/solid_mechanics/materials/weight_function.hh
D		src/model/solid_mechanics/materials/weight_function_tmpl.hh
A	(dir)	src/model/solid_mechanics/materials/weight_functions/
A		src/model/solid_mechanics/materials/weight_functions/base_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/base_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/damaged_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/damaged_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function_inline_impl.cc
A		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
A		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
A		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
A	(dir)	src/model/solid_mechanics/solid_mechanics_model_cohesive/
D		src/model/solid_mechanics/solid_mechanics_model_cohesive.cc
D		src/model/solid_mechanics/solid_mechanics_model_cohesive.hh
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
A		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
A	(dir)	src/model/solid_mechanics/solid_mechanics_model_embedded_interface/
A		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
A		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
A		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
A		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
M		src/model/solid_mechanics/solid_mechanics_model_tmpl.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model.hh
M		src/model/structural_mechanics/structural_mechanics_model_inline_impl.cc
M		src/model/structural_mechanics/structural_mechanics_model_mass.cc
A	(dir)	src/python/
A		src/python/python_functor.cc
A		src/python/python_functor.hh
A		src/python/python_functor_inline_impl.cc
A		src/solver/petsc_matrix.cc
A		src/solver/petsc_matrix.hh
A		src/solver/petsc_wrapper.hh
M		src/solver/solver.cc
M		src/solver/solver.hh
A		src/solver/solver_inline_impl.cc
M		src/solver/solver_mumps.cc
M		src/solver/solver_mumps.hh
A		src/solver/solver_petsc.cc
A		src/solver/solver_petsc.hh
M		src/solver/sparse_matrix.cc
M		src/solver/sparse_matrix.hh
M		src/solver/sparse_matrix_inline_impl.cc
A		src/solver/static_solver.cc
A		src/solver/static_solver.hh
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/data_accessor_inline_impl.cc
M		src/synchronizer/distributed_synchronizer.cc
M		src/synchronizer/distributed_synchronizer.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/filtered_synchronizer.hh
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/grid_synchronizer.hh
M		src/synchronizer/mpi_type_wrapper.hh
M		src/synchronizer/real_static_communicator.hh
M		src/synchronizer/static_communicator.hh
M		src/synchronizer/static_communicator_dummy.hh
M		src/synchronizer/static_communicator_inline_impl.hh
M		src/synchronizer/static_communicator_mpi.cc
M		src/synchronizer/static_communicator_mpi.hh
M		src/synchronizer/synchronizer.cc
M		src/synchronizer/synchronizer.hh
M		src/synchronizer/synchronizer_registry.cc
M		src/synchronizer/synchronizer_registry.hh
M		test/CMakeLists.txt
M		test/test_common/CMakeLists.txt
M		test/test_common/test_grid.cc
A		test/test_common/test_types.cc
M		test/test_common/test_vector/CMakeLists.txt
M		test/test_contact/CMakeLists.txt
A	(dir)	test/test_fe_engine/
A		test/test_fe_engine/CMakeLists.txt
A		test/test_fe_engine/_b_beam_2.msh
A		test/test_fe_engine/_hexahedron_20.msh
V		test/{test_fe_engine ← test_fem}/_hexahedron_8.msh
A		test/test_fe_engine/_pentahedron_15.msh
A		test/test_fe_engine/_pentahedron_6.msh
V		test/{test_fe_engine ← test_fem}/_quadrangle_4.msh
V		test/{test_fe_engine ← test_fem}/_quadrangle_8.msh
V		test/{test_fe_engine ← test_fem}/_segment_2.msh
V		test/{test_fe_engine ← test_fem}/_segment_3.msh
V		test/{test_fe_engine ← test_fem}/_tetrahedron_10.msh
V		test/{test_fe_engine ← test_fem}/_tetrahedron_4.msh
V		test/{test_fe_engine ← test_fem}/_triangle_3.msh
V		test/{test_fe_engine ← test_fem}/_triangle_6.msh
A		test/test_fe_engine/circle.geo
A		test/test_fe_engine/cube.geo
V		test/{test_fe_engine ← test_fem}/cube_physical_names.geo
V		test/{test_fe_engine ← test_fem}/generate_test
A		test/test_fe_engine/hexa_structured.geo
A		test/test_fe_engine/line.geo
A		test/test_fe_engine/square.geo
A		test/test_fe_engine/square_structured.geo
V		test/{test_fe_engine ← test_fem}/test_facet_element_mapping.cc
A		test/test_fe_engine/test_fe_engine_precomputation.cc
A		test/test_fe_engine/test_fe_engine_precomputation_hexahedron_20.verified
A		test/test_fe_engine/test_fe_engine_precomputation_hexahedron_8.verified
A		test/test_fe_engine/test_fe_engine_precomputation_pentahedron_15.verified
A		test/test_fe_engine/test_fe_engine_precomputation_pentahedron_6.verified
A		test/test_fe_engine/test_fe_engine_precomputation_quadrangle_4.verified
A		test/test_fe_engine/test_fe_engine_precomputation_quadrangle_8.verified
A		test/test_fe_engine/test_fe_engine_precomputation_segment_2.verified
A		test/test_fe_engine/test_fe_engine_precomputation_segment_3.verified
A		test/test_fe_engine/test_fe_engine_precomputation_tetrahedron_10.verified
A		test/test_fe_engine/test_fe_engine_precomputation_tetrahedron_4.verified
A		test/test_fe_engine/test_fe_engine_precomputation_triangle_3.verified
A		test/test_fe_engine/test_fe_engine_precomputation_triangle_6.verified
A		test/test_fe_engine/test_gradient.cc
A		test/test_fe_engine/test_gradient_hexahedron_20.verified
A		test/test_fe_engine/test_gradient_hexahedron_8.verified
A		test/test_fe_engine/test_gradient_quadrangle_4.verified
A		test/test_fe_engine/test_gradient_quadrangle_8.verified
A		test/test_fe_engine/test_gradient_segment_2.verified
A		test/test_fe_engine/test_gradient_segment_3.verified
A		test/test_fe_engine/test_gradient_tetrahedron_10.verified
A		test/test_fe_engine/test_gradient_tetrahedron_4.verified
A		test/test_fe_engine/test_gradient_triangle_3.verified
A		test/test_fe_engine/test_gradient_triangle_6.verified
A		test/test_fe_engine/test_integrate.cc
A		test/test_fe_engine/test_integrate_hexahedron_20.verified
A		test/test_fe_engine/test_integrate_hexahedron_8.verified
A		test/test_fe_engine/test_integrate_quadrangle_4.verified
A		test/test_fe_engine/test_integrate_quadrangle_8.verified
A		test/test_fe_engine/test_integrate_segment_2.verified
A		test/test_fe_engine/test_integrate_segment_3.verified
A		test/test_fe_engine/test_integrate_tetrahedron_10.verified
A		test/test_fe_engine/test_integrate_tetrahedron_4.verified
A		test/test_fe_engine/test_integrate_triangle_3.verified
A		test/test_fe_engine/test_integrate_triangle_6.verified
A		test/test_fe_engine/test_interpolate.cc
A		test/test_fe_engine/test_interpolate_bernoulli_beam_2.cc
A		test/test_fe_engine/test_interpolate_bernoulli_beam_2.verified
A		test/test_fe_engine/test_interpolate_hexahedron_20.verified
A		test/test_fe_engine/test_interpolate_hexahedron_8.verified
A		test/test_fe_engine/test_interpolate_quadrangle_4.verified
A		test/test_fe_engine/test_interpolate_quadrangle_8.verified
A		test/test_fe_engine/test_interpolate_segment_2.verified
A		test/test_fe_engine/test_interpolate_segment_3.verified
A		test/test_fe_engine/test_interpolate_tetrahedron_10.verified
A		test/test_fe_engine/test_interpolate_tetrahedron_4.verified
A		test/test_fe_engine/test_interpolate_triangle_3.verified
A		test/test_fe_engine/test_interpolate_triangle_6.verified
A		test/test_fe_engine/test_inverse_map.cc
A		test/test_fe_engine/test_inverse_map_hexahedron_20.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_hexahedron_8.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_quadrangle_4.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_quadrangle_8.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_segment_2.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_segment_3.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_tetrahedron_10.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_tetrahedron_4.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_triangle_3.verified
V		test/{test_fe_engine ← test_fem}/test_inverse_map_triangle_6.verified
V		test/{test_fe_engine ← test_fem}/test_mesh_boundary.cc
V		test/{test_fe_engine ← test_fem}/test_mesh_data.cc
D		test/test_fem
D		test/test_fem/CMakeLists.txt
V		test/{test_fem → test_fe_engine}/_hexahedron_8.msh
V		test/{test_fem → test_fe_engine}/_quadrangle_4.msh
V		test/{test_fem → test_fe_engine}/_quadrangle_8.msh
V		test/{test_fem → test_fe_engine}/_segment_2.msh
V		test/{test_fem → test_fe_engine}/_segment_3.msh
V		test/{test_fem → test_fe_engine}/_tetrahedron_10.msh
V		test/{test_fem → test_fe_engine}/_tetrahedron_4.msh
V		test/{test_fem → test_fe_engine}/_triangle_3.msh
V		test/{test_fem → test_fe_engine}/_triangle_6.msh
D		test/test_fem/cube.geo
V		test/{test_fem → test_fe_engine}/cube_physical_names.geo
V		test/{test_fem → test_fe_engine}/generate_test
V		test/{test_fem → test_fe_engine}/test_facet_element_mapping.cc
D		test/test_fem/test_gradient.cc
D		test/test_fem/test_gradient_hexahedron_8.verified
D		test/test_fem/test_gradient_quadrangle_4.verified
D		test/test_fem/test_gradient_quadrangle_8.verified
D		test/test_fem/test_gradient_segment_2.verified
D		test/test_fem/test_gradient_segment_3.verified
D		test/test_fem/test_gradient_tetrahedron_10.verified
D		test/test_fem/test_gradient_tetrahedron_4.verified
D		test/test_fem/test_gradient_triangle_3.verified
D		test/test_fem/test_gradient_triangle_6.verified
D		test/test_fem/test_integrate.cc
D		test/test_fem/test_integrate_hexahedron_8.verified
D		test/test_fem/test_integrate_quadrangle_4.verified
D		test/test_fem/test_integrate_quadrangle_8.verified
D		test/test_fem/test_integrate_segment_2.verified
D		test/test_fem/test_integrate_segment_3.verified
D		test/test_fem/test_integrate_tetrahedron_10.verified
D		test/test_fem/test_integrate_tetrahedron_4.verified
D		test/test_fem/test_integrate_triangle_3.verified
D		test/test_fem/test_integrate_triangle_6.verified
D		test/test_fem/test_interpolate.cc
D		test/test_fem/test_interpolate_hexahedron_8.verified
D		test/test_fem/test_interpolate_quadrangle_4.verified
D		test/test_fem/test_interpolate_quadrangle_8.verified
D		test/test_fem/test_interpolate_segment_2.verified
D		test/test_fem/test_interpolate_segment_3.verified
D		test/test_fem/test_interpolate_tetrahedron_10.verified
D		test/test_fem/test_interpolate_tetrahedron_4.verified
D		test/test_fem/test_interpolate_triangle_3.verified
D		test/test_fem/test_interpolate_triangle_6.verified
D		test/test_fem/test_inverse_map.cc
V		test/{test_fem → test_fe_engine}/test_inverse_map_hexahedron_8.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_quadrangle_4.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_quadrangle_8.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_segment_2.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_segment_3.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_tetrahedron_10.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_tetrahedron_4.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_triangle_3.verified
V		test/{test_fem → test_fe_engine}/test_inverse_map_triangle_6.verified
V		test/{test_fem → test_fe_engine}/test_mesh_boundary.cc
V		test/{test_fem → test_fe_engine}/test_mesh_data.cc
A	(dir)	test/test_geometry/
A		test/test_geometry/CMakeLists.txt
A		test/test_geometry/test_geometry_intersection.cc
A		test/test_geometry/test_geometry_predicates.cc
A		test/test_geometry/test_geometry_tetrahedron.msh
A		test/test_geometry/test_geometry_triangle.msh
A		test/test_geometry/test_segment_intersection_tetrahedron_4.cc
A		test/test_geometry/test_segment_intersection_triangle_3.cc
M		test/test_io/test_dumper/CMakeLists.txt
M		test/test_io/test_parser/CMakeLists.txt
M		test/test_io/test_parser/input_file.dat
M		test/test_io/test_parser/test_parser.verified
M		test/test_mesh_utils/CMakeLists.txt
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A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_20.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.cc
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_hexahedron_8.verified
A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed2d_linear.cc
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A		test/test_mesh_utils/test_buildfacets/test_buildfacets_mixed3d_quadratic.cc
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A		test/test_mesh_utils/test_buildfacets/test_buildfacets_pentahedron_15.cc
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D		test/test_mesh_utils/test_facet_extraction
D		test/test_mesh_utils/test_facet_extraction/CMakeLists.txt
D		test/test_mesh_utils/test_facet_extraction/cube.geo
D		test/test_mesh_utils/test_facet_extraction/square.geo
D		test/test_mesh_utils/test_facet_extraction/test_facet_extraction_tetrahedron_4.cc
D		test/test_mesh_utils/test_facet_extraction/test_facet_extraction_triangle_3.cc
M		test/test_mesh_utils/test_mesh_io/CMakeLists.txt
M		test/test_mesh_utils/test_mesh_partitionate/CMakeLists.txt
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_mesh_utils/test_pbc_tweak/CMakeLists.txt
A	(dir)	test/test_mesh_utils/test_segment_nodetype/
A		test/test_mesh_utils/test_segment_nodetype/CMakeLists.txt
A		test/test_mesh_utils/test_segment_nodetype/mesh.geo
A		test/test_mesh_utils/test_segment_nodetype/mesh.msh
A		test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.cc
A		test/test_mesh_utils/test_segment_nodetype/test_segment_nodetype.sh
M		test/test_model/CMakeLists.txt
M		test/test_model/test_heat_transfer_model/CMakeLists.txt
A		test/test_model/test_heat_transfer_model/test_heat_transfer_model_square2d_implicit.cc
A	(dir)	test/test_model/test_non_local_toolbox/
A		test/test_model/test_non_local_toolbox/CMakeLists.txt
A		test/test_model/test_non_local_toolbox/fine_mesh.msh
A		test/test_model/test_non_local_toolbox/material.dat
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A		test/test_model/test_non_local_toolbox/pair_test.msh
A		test/test_model/test_non_local_toolbox/parallel_test.msh
A		test/test_model/test_non_local_toolbox/plate.geo
A		test/test_model/test_non_local_toolbox/plate.msh
A		test/test_model/test_non_local_toolbox/plot_neighborhoods.py
A		test/test_model/test_non_local_toolbox/test_build_neighborhood_parallel.cc
A		test/test_model/test_non_local_toolbox/test_build_neighborhood_parallel.sh
A		test/test_model/test_non_local_toolbox/test_material.cc
A		test/test_model/test_non_local_toolbox/test_material.hh
A		test/test_model/test_non_local_toolbox/test_material_damage.cc
A		test/test_model/test_non_local_toolbox/test_material_damage.hh
A		test/test_model/test_non_local_toolbox/test_non_local_averaging.cc
A		test/test_model/test_non_local_toolbox/test_non_local_neighborhood_base.cc
A		test/test_model/test_non_local_toolbox/test_non_local_neighborhood_base.verified
A		test/test_model/test_non_local_toolbox/test_pair_computation.cc
A		test/test_model/test_non_local_toolbox/test_pair_computation.sh
A		test/test_model/test_non_local_toolbox/test_pair_computation_parallel.sh
A		test/test_model/test_non_local_toolbox/test_remove_damage_weight_function.cc
A		test/test_model/test_non_local_toolbox/test_remove_damage_weight_function.verified
A		test/test_model/test_non_local_toolbox/test_weight_computation.cc
A		test/test_model/test_non_local_toolbox/test_weight_computation.verified
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/material_elastic_plane_strain.dat
A		test/test_model/test_solid_mechanics_model/material_selector.dat
A		test/test_model/test_solid_mechanics_model/material_selector.geo
A		test/test_model/test_solid_mechanics_model/material_selector.msh
M		test/test_model/test_solid_mechanics_model/patch_tests/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/patch_tests/colone_weight.cc
A		test/test_model/test_solid_mechanics_model/patch_tests/data/_hexahedron_20.msh
A		test/test_model/test_solid_mechanics_model/patch_tests/data/_pentahedron_15.msh
A		test/test_model/test_solid_mechanics_model/patch_tests/data/_pentahedron_6.msh
A		test/test_model/test_solid_mechanics_model/patch_tests/data/material_anisotropic.dat
M		test/test_model/test_solid_mechanics_model/patch_tests/data/material_check_stress_plane_strain.dat
M		test/test_model/test_solid_mechanics_model/patch_tests/explicit/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/patch_tests/explicit/patch_test_explicit.cc
A		test/test_model/test_solid_mechanics_model/patch_tests/explicit/patch_test_explicit_anisotropic.cc
M		test/test_model/test_solid_mechanics_model/patch_tests/implicit/patch_test_implicit.cc
M		test/test_model/test_solid_mechanics_model/patch_tests/lumped_mass/test_lumped_mass.cc
A		test/test_model/test_solid_mechanics_model/square_structured.geo
M		test/test_model/test_solid_mechanics_model/test_cohesive/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_1d_element/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_1d_element/material.dat
A	(dir)	test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/material.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/mesh.geo
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_buildfragments/test_cohesive_buildfragments.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/fatigue.msh
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A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/material_fatigue.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic.cc
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_fatigue.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic/test_cohesive_extrinsic_tetrahedron.cc
A	(dir)	test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/K_matrix_verified.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/material.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/quadrangle.msh
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.cc
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_extrinsic_implicit/test_assembling_K_cohe_elements.sh
A	(dir)	test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/3d_spherical_inclusion.geo
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/input_file.dat
A		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/material.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/material_tetrahedron.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_quadrangle.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic/test_cohesive_intrinsic_tetrahedron_fragmentation.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/CMakeLists.txt
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A		test/test_model/test_solid_mechanics_model/test_embedded_interface/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_element.dat
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh.msh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh_prestress.msh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/embedded_mesh_prestress_reinforcement.msh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/material.dat
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A		test/test_model/test_solid_mechanics_model/test_embedded_interface/prestress.dat
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.sh
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
A		test/test_model/test_solid_mechanics_model/test_embedded_interface/triangle.msh
A		test/test_model/test_solid_mechanics_model/test_material_selector.cc
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
M		test/test_model/test_solid_mechanics_model/test_materials/barre_trou.geo
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A		test/test_model/test_solid_mechanics_model/test_materials/orthotropic.dat
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M		test/test_model/test_solid_mechanics_model/test_materials/test_interpolate_stress.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
A	(dir)	test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
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A		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.geo
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.hh
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/material.dat
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/material_damage_non_local.dat
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/mesh.geo
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/mesh_section_gap.geo
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_damage_non_local.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/test_material_non_local.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_orthotropic.cc
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A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/material_standard_linear_solid_deviatoric_relaxation.dat
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.geo
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation_tension.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_parallel.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_structured.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_bar_traction2d_structured_pbc.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_circle_2.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d_pbc.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_cube3d_tetra10.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_segment_parallel.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_square.cc
M		test/test_model/test_structural_mechanics_model/CMakeLists.txt
A		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_12_10_13.cc
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A		test/test_python_interface/CMakeLists.txt
A		test/test_python_interface/input_test.dat
A		test/test_python_interface/mesh_dcb_2d.geo
A		test/test_python_interface/test_multiple_init.py
A		test/test_solver/1D_bar.geo
A		test/test_solver/CMakeCache.txt
M		test/test_solver/CMakeLists.txt
A		test/test_solver/square.geo
A		test/test_solver/test_petsc_matrix_apply_boundary.cc
A		test/test_solver/test_petsc_matrix_apply_boundary.sh
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A		test/test_solver/test_petsc_matrix_diagonal.sh
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A		test/test_solver/test_petsc_matrix_profile.verified
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A		test/test_solver/test_petsc_matrix_profile_parallel.sh
A		test/test_solver/test_petsc_matrix_profile_parallel.verified
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A		test/test_solver/test_solver_petsc.sh
A		test/test_solver/test_solver_petsc_parallel.sh
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M		test/test_static_memory/CMakeLists.txt
D		test/test_surface_extraction
D		test/test_surface_extraction/CMakeLists.txt
D		test/test_surface_extraction/cubes.geo
D		test/test_surface_extraction/squares.geo
D		test/test_surface_extraction/test_surface_extraction_tetrahedron_4.cc
D		test/test_surface_extraction/test_surface_extraction_triangle_3.cc
M		test/test_synchronizer/CMakeLists.txt
A		test/test_synchronizer/test_dof_data_accessor.hh
A		test/test_synchronizer/test_dof_synchronizer_communication.cc
A		test/test_synchronizer/test_dof_synchronizer_communication.sh
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer_check_neighbors.cc
M		third-party/MUMPS_4.10.0_make.inc.cmake
M		third-party/MUMPS_4.9.2_make.inc.cmake
A		third-party/MUMPS_5.0.0.patch
A		third-party/blas_3.5.0_make.inc.cmake
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A		third-party/cmake/blackdynamite.cmake
A		third-party/cmake/blas.cmake
A		third-party/cmake/iohelper.cmake
A		third-party/cmake/mumps.cmake
A		third-party/cmake/scalapack.cmake
A		third-party/cmake/scotch.cmake
M		third-party/scotch_5.1.12b.patch
M		third-party/scotch_5.1.12b_make.inc.cmake