Diffusion BIOP Run Macro (master) History

ijp-biop-run-macro/src
masterf83fb54e445ea641984351f…

Aug 30 2015

PDFWriter file name: uses maskHash so remove "mask"
f83fb54e445e
·daniel j. white on Aug 30 2015, 16:04.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
write coloc job name at top of PDF output
d2734712c33c
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
Remove old stale comments and fix comment typo
83bee3b0d009
·daniel j. white on Aug 30 2015, 15:49.
use same job name in all ResultHandlers
a7dafc9e9781
·daniel j. white on Aug 30 2015, 15:49.
Add main class to make development easier
43e1393cf017
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.
fix macro recordability - remove " " from gd label
c4ef70887e3e
·daniel j. white on Aug 30 2015, 15:49.
input image stats/params/vals now in DataContainer
64cbd07c0f3a
·daniel j. white on Aug 30 2015, 15:49.
fix duplicated results writing into IJ.log
2d6ecf0b0f6e
·daniel j. white on Aug 30 2015, 15:48.
Tidy up comments and fix to be more specific
d84174a27a50
·daniel j. white on Aug 30 2015, 15:36.
UI: make regression type selection work with macros
dc9deb654875
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:36.
explanation comments, variables fraction coloc
5ee6f4319d10
·daniel j. white on Aug 30 2015, 15:36.
fix typo: Real nouns have capitals
82647666855b
·daniel j. white on Aug 30 2015, 15:30.
Rename objects and fix comments and javadoc
d2ea4bfadbed
·daniel j. white on Aug 30 2015, 15:29.
Fix Manders' split coefficients wrong channel check bug
e4a3a6ec36e0
·daniel j. white on Aug 30 2015, 15:28.

Jul 29 2015

Fix naming of bisection stepper
646d38da33d4
·Tom Kazimiers on Jul 29 2015, 03:59.

Feb 12 2015

Remove some unused imports
cce08cb8458d
·Tom Kazimiers on Feb 12 2015, 15:53.
Add original threshold regression of Costes
8c5e587512a5
·Tom Kazimiers on Feb 12 2015, 15:51.
Support text values in result handlers
e6ee043b3161
·Tom Kazimiers on Feb 12 2015, 15:46.

Feb 4 2015

Add stepper classes for different threshold walking patterns
0c86d3c24329
·Tom Kazimiers on Feb 4 2015, 23:36.

Jan 27 2015

Auto threshold regression: fix comment
f890be035206
·Tom Kazimiers on Jan 27 2015, 15:43.
Auto threshold regression: waslk channel two if slope below -1
4c7d570aff5b
·Tom Kazimiers on Jan 27 2015, 14:44.
Make auto threshold regression commutative wrt. channels
863fdbeaf778
·Tom Kazimiers on Jan 27 2015, 05:52.
Auto threshold regression: change comment slightly (minor)
5e8524b55543
·Tom Kazimiers on Jan 27 2015, 04:35.

Jan 25 2015

Add test for commutativity of the auto thresholding regression
15bd1cc7a89e
·Tom Kazimiers on Jan 25 2015, 03:08.
Fix some image data type variable initializations
52fb5c96d019
·Tom Kazimiers on Jan 25 2015, 03:06.

Jan 20 2015

Auto threshold regression: refactor type range checks
f9200259a8bf
·Tom Kazimiers on Jan 20 2015, 13:38.
Fix mask creation test by initializing mask with correct dimensions
09c46ce81306
·Tom Kazimiers on Jan 20 2015, 04:24.
Move test data into Maven's test resouces folder
afb9a8450f59
·Tom Kazimiers on Jan 20 2015, 04:06.

Nov 6 2014

POM: bump to pom-fiji 5.0
af6eace721a8
·Curtis Rueden on Nov 6 2014, 04:58.

Nov 5 2014

Organize imports
58a8f73c12c8
·Curtis Rueden on Nov 5 2014, 20:23.

Mar 14 2014

Make sure calculated thresholds fit into image data type
5f6dd6d91250
·Tom Kazimiers on Mar 14 2014, 18:51.

Feb 11 2014

Merge pull request #69 from chalkie666/master
4fa48523f776
·dscho on Feb 11 2014, 16:09.
Coloc 2: fix flawed bin width calculation
8be1045451c8
·Johannes Schindelin on Feb 11 2014, 02:29.
Coloc 2: make it easier to apply interactive test to custom images
d74e95eaa8e2
·Johannes Schindelin on Feb 11 2014, 02:29.
Kendall Tau: avoid integer overflow
37db684dbfba
·Johannes Schindelin on Feb 11 2014, 02:29.
Add Kendall Tau to the default methods in the interactive Coloc2 test
c4ccfcea8d72
·Johannes Schindelin on Feb 11 2014, 02:28.

Feb 9 2014

send coloc numerical results to IJ.log for scraping batch results
045f6f05cc40
·chalkie666 on Feb 9 2014, 21:27.
get image names and use them in output
c7e2d6137192
·chalkie666 on Feb 9 2014, 21:04.
bug fix channel names
c2998e967d30
·chalkie666 on Feb 9 2014, 20:25.
fix channel names bug
2252daa0e0b0
·chalkie666 on Feb 9 2014, 20:22.

Jan 29 2014

Kendall-Tau: add an exhaustive test
a404d37200f8
·Johannes Schindelin on Jan 29 2014, 20:51.
Use the fast Kendall Tau-b algorithm instead of the naive one
2e678fa6501a
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an efficient implementation of Kendall's Tau-b
a858d5d35bda
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the IntArraySorter class
99a03d970929
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the reset() method to the PairIterator
01cbead625dc
·Johannes Schindelin on Jan 29 2014, 20:51.
Test more conditions of Kendall's Tau-b
2040ac8faae1
·Johannes Schindelin on Jan 29 2014, 20:51.
Add a test for the Kendall Tau-b algorithm
113c0c8bd919
·Johannes Schindelin on Jan 29 2014, 20:51.
Make the TwinCursor a PairIterator
4857bff46b04
·Johannes Schindelin on Jan 29 2014, 20:51.
Use better names than getChannel1 and getChannel2
16242ac2e343
·Johannes Schindelin on Jan 29 2014, 20:51.
Add some documentation to the implementation of Kendall's Tau-b
4a716dc8ffc1
·Johannes Schindelin on Jan 29 2014, 20:51.
Introduce the PairIterator
bfd385030886
·Johannes Schindelin on Jan 29 2014, 20:51.
Coloc 2: Add Kendall's Tau-b rank correlation
b6cdb153456d
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an easily-called interactive test for Coloc 2
4691062f7844
·Johannes Schindelin on Jan 29 2014, 20:51.

Jul 24 2013

Colocalization Analysis (unit tests): do not expect test data to be present
18d95da596f3
·Johannes Schindelin on Jul 24 2013, 23:12.
Colocalization Analysis (unit tests): move two forgotten classes
af40ae019487
·Johannes Schindelin on Jul 24 2013, 23:12.
Move all unit tests into the appropriate src/test/java/
7600141de61f
·Johannes Schindelin on Jul 24 2013, 21:57.

Jul 4 2012

Mavenize Colocalisation_Analysis
642c55aa2288
·Johannes Schindelin on Jul 4 2012, 02:12.

ijp-biop-run-macro/srcmasterf83fb54e445ea641984351f…

Aug 30 2015

Jul 29 2015

Feb 12 2015

Feb 4 2015

Jan 27 2015

Jan 25 2015

Jan 20 2015

Nov 6 2014

Nov 5 2014

Mar 14 2014

Feb 11 2014

Feb 9 2014

Jan 29 2014

Jul 24 2013

Jul 4 2012

ijp-biop-run-macro/src
masterf83fb54e445ea641984351f…