Diffusion BIOP Run Macro (master) History

main
master22ae47d7a5d73a1b5913239…

Nov 15 2016

prevented accessing the 2D histogram out of range. The number of these access…
22ae47d7a5d7
·haesleinhuepf on Nov 15 2016, 11:43.
Added an input check looking for negative minimum grey values
22c1bfb28f86
·haesleinhuepf on Nov 15 2016, 11:42.

Jun 16 2016

Fix dialog parameters to avoid duplicate keywords
eeeac032f95a
·eglinger / GitHub on Jun 16 2016, 17:00.

Sep 19 2015

Make Coloc_Job_Name value result
ca6cb3e65fa9
·daniel j. white on Sep 19 2015, 12:36.

Sep 2 2015

Results: Set jobName result value to Done instead of -1
2094186244da
·daniel j. white on Sep 2 2015, 15:31.
Results: Allow ResultsHandlers to get mask type and ID
0d148e5e355e
·daniel j. white on Sep 2 2015, 15:31.
Results: Fix typo in DataContainer
779cb1c69fa7
·daniel j. white on Sep 2 2015, 15:24.
Results: issue #33, channel name in image name for results.
897fd4b354f2
·daniel j. white on Sep 2 2015, 15:21.

Aug 30 2015

Use Eclipse to find and add missing @Override annotations
a06fdea26f35
·daniel j. white on Aug 30 2015, 16:05.
change IJ.write to IJ.log
7f32ca9bdf50
·daniel j. white on Aug 30 2015, 16:05.
Fix comments and comments formatting and names
79a72adc5c33
·daniel j. white on Aug 30 2015, 16:05.
PDFWriter file name: uses maskHash so remove "mask"
f83fb54e445e
·daniel j. white on Aug 30 2015, 16:04.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
write coloc job name at top of PDF output
d2734712c33c
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
Remove old stale comments and fix comment typo
83bee3b0d009
·daniel j. white on Aug 30 2015, 15:49.
use same job name in all ResultHandlers
a7dafc9e9781
·daniel j. white on Aug 30 2015, 15:49.
Add main class to make development easier
43e1393cf017
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.
fix macro recordability - remove " " from gd label
c4ef70887e3e
·daniel j. white on Aug 30 2015, 15:49.
input image stats/params/vals now in DataContainer
64cbd07c0f3a
·daniel j. white on Aug 30 2015, 15:49.
fix duplicated results writing into IJ.log
2d6ecf0b0f6e
·daniel j. white on Aug 30 2015, 15:48.
Tidy up comments and fix to be more specific
d84174a27a50
·daniel j. white on Aug 30 2015, 15:36.
UI: make regression type selection work with macros
dc9deb654875
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:36.
explanation comments, variables fraction coloc
5ee6f4319d10
·daniel j. white on Aug 30 2015, 15:36.
Rename objects and fix comments and javadoc
d2ea4bfadbed
·daniel j. white on Aug 30 2015, 15:29.
Fix Manders' split coefficients wrong channel check bug
e4a3a6ec36e0
·daniel j. white on Aug 30 2015, 15:28.

Jul 29 2015

Fix naming of bisection stepper
646d38da33d4
·Tom Kazimiers on Jul 29 2015, 03:59.

Feb 12 2015

Remove some unused imports
cce08cb8458d
·Tom Kazimiers on Feb 12 2015, 15:53.
Add original threshold regression of Costes
8c5e587512a5
·Tom Kazimiers on Feb 12 2015, 15:51.
Support text values in result handlers
e6ee043b3161
·Tom Kazimiers on Feb 12 2015, 15:46.

Feb 4 2015

Add stepper classes for different threshold walking patterns
0c86d3c24329
·Tom Kazimiers on Feb 4 2015, 23:36.

Jan 27 2015

Auto threshold regression: fix comment
f890be035206
·Tom Kazimiers on Jan 27 2015, 15:43.
Auto threshold regression: waslk channel two if slope below -1
4c7d570aff5b
·Tom Kazimiers on Jan 27 2015, 14:44.
Make auto threshold regression commutative wrt. channels
863fdbeaf778
·Tom Kazimiers on Jan 27 2015, 05:52.
Auto threshold regression: change comment slightly (minor)
5e8524b55543
·Tom Kazimiers on Jan 27 2015, 04:35.

Jan 25 2015

Fix some image data type variable initializations
52fb5c96d019
·Tom Kazimiers on Jan 25 2015, 03:06.

Jan 20 2015

Auto threshold regression: refactor type range checks
f9200259a8bf
·Tom Kazimiers on Jan 20 2015, 13:38.

Nov 6 2014

POM: bump to pom-fiji 5.0
af6eace721a8
·Curtis Rueden on Nov 6 2014, 04:58.

Nov 5 2014

Organize imports
58a8f73c12c8
·Curtis Rueden on Nov 5 2014, 20:23.

Mar 14 2014

Make sure calculated thresholds fit into image data type
5f6dd6d91250
·Tom Kazimiers on Mar 14 2014, 18:51.

Feb 11 2014

Merge pull request #69 from chalkie666/master
4fa48523f776
·dscho on Feb 11 2014, 16:09.
Coloc 2: fix flawed bin width calculation
8be1045451c8
·Johannes Schindelin on Feb 11 2014, 02:29.
Kendall Tau: avoid integer overflow
37db684dbfba
·Johannes Schindelin on Feb 11 2014, 02:29.

Feb 9 2014

send coloc numerical results to IJ.log for scraping batch results
045f6f05cc40
·chalkie666 on Feb 9 2014, 21:27.
get image names and use them in output
c7e2d6137192
·chalkie666 on Feb 9 2014, 21:04.
bug fix channel names
c2998e967d30
·chalkie666 on Feb 9 2014, 20:25.
fix channel names bug
2252daa0e0b0
·chalkie666 on Feb 9 2014, 20:22.

Jan 29 2014

Use the fast Kendall Tau-b algorithm instead of the naive one
2e678fa6501a
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an efficient implementation of Kendall's Tau-b
a858d5d35bda
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the IntArraySorter class
99a03d970929
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the reset() method to the PairIterator
01cbead625dc
·Johannes Schindelin on Jan 29 2014, 20:51.
Make the TwinCursor a PairIterator
4857bff46b04
·Johannes Schindelin on Jan 29 2014, 20:51.
Use better names than getChannel1 and getChannel2
16242ac2e343
·Johannes Schindelin on Jan 29 2014, 20:51.
Add some documentation to the implementation of Kendall's Tau-b
4a716dc8ffc1
·Johannes Schindelin on Jan 29 2014, 20:51.
Introduce the PairIterator
bfd385030886
·Johannes Schindelin on Jan 29 2014, 20:51.
Coloc 2: Add Kendall's Tau-b rank correlation
b6cdb153456d
·Johannes Schindelin on Jan 29 2014, 20:51.

Jul 24 2013

Colocalization Analysis (unit tests): move two forgotten classes
af40ae019487
·Johannes Schindelin on Jul 24 2013, 23:12.
Move all unit tests into the appropriate src/test/java/
7600141de61f
·Johannes Schindelin on Jul 24 2013, 21:57.

Jul 4 2012

Mavenize Colocalisation_Analysis
642c55aa2288
·Johannes Schindelin on Jul 4 2012, 02:12.

ijp-biop-run-macro/src/mainmaster22ae47d7a5d73a1b5913239…

Nov 15 2016

Jun 16 2016

Sep 19 2015

Sep 2 2015

Aug 30 2015

Jul 29 2015

Feb 12 2015

Feb 4 2015

Jan 27 2015

Jan 25 2015

Jan 20 2015

Nov 6 2014

Nov 5 2014

Mar 14 2014

Feb 11 2014

Feb 9 2014

Jan 29 2014

Jul 24 2013

Jul 4 2012

ijp-biop-run-macro/src/main
master22ae47d7a5d73a1b5913239…