Diffusion BIOP Run Macro (master) History

algorithms
master509b2f03981089fe300de73…

Nov 20 2016

tidy and clarify input check warnings
27fb4200b19c
·dan white / GitHub on Nov 20 2016, 19:58.
Clarify input data warning messages
80d4c6ca1d7c
·dan white / GitHub on Nov 20 2016, 19:52.

Nov 15 2016

prevented accessing the 2D histogram out of range. The number of these access…
22ae47d7a5d7
·haesleinhuepf on Nov 15 2016, 11:43.
Added an input check looking for negative minimum grey values
22c1bfb28f86
·haesleinhuepf on Nov 15 2016, 11:42.

Sep 19 2015

Make Coloc_Job_Name value result
ca6cb3e65fa9
·daniel j. white on Sep 19 2015, 12:36.

Sep 2 2015

Results: Set jobName result value to Done instead of -1
2094186244da
·daniel j. white on Sep 2 2015, 15:31.
Results: Allow ResultsHandlers to get mask type and ID
0d148e5e355e
·daniel j. white on Sep 2 2015, 15:31.

Aug 30 2015

Use Eclipse to find and add missing @Override annotations
a06fdea26f35
·daniel j. white on Aug 30 2015, 16:05.
Fix comments and comments formatting and names
79a72adc5c33
·daniel j. white on Aug 30 2015, 16:05.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.
input image stats/params/vals now in DataContainer
64cbd07c0f3a
·daniel j. white on Aug 30 2015, 15:49.
explanation comments, variables fraction coloc
5ee6f4319d10
·daniel j. white on Aug 30 2015, 15:36.
Rename objects and fix comments and javadoc
d2ea4bfadbed
·daniel j. white on Aug 30 2015, 15:29.
Fix Manders' split coefficients wrong channel check bug
e4a3a6ec36e0
·daniel j. white on Aug 30 2015, 15:28.

Jul 29 2015

Fix naming of bisection stepper
646d38da33d4
·Tom Kazimiers on Jul 29 2015, 03:59.

Feb 12 2015

Remove some unused imports
cce08cb8458d
·Tom Kazimiers on Feb 12 2015, 15:53.
Add original threshold regression of Costes
8c5e587512a5
·Tom Kazimiers on Feb 12 2015, 15:51.

Feb 4 2015

Add stepper classes for different threshold walking patterns
0c86d3c24329
·Tom Kazimiers on Feb 4 2015, 23:36.

Jan 27 2015

Auto threshold regression: fix comment
f890be035206
·Tom Kazimiers on Jan 27 2015, 15:43.
Auto threshold regression: waslk channel two if slope below -1
4c7d570aff5b
·Tom Kazimiers on Jan 27 2015, 14:44.
Make auto threshold regression commutative wrt. channels
863fdbeaf778
·Tom Kazimiers on Jan 27 2015, 05:52.
Auto threshold regression: change comment slightly (minor)
5e8524b55543
·Tom Kazimiers on Jan 27 2015, 04:35.

Jan 25 2015

Fix some image data type variable initializations
52fb5c96d019
·Tom Kazimiers on Jan 25 2015, 03:06.

Jan 20 2015

Auto threshold regression: refactor type range checks
f9200259a8bf
·Tom Kazimiers on Jan 20 2015, 13:38.

Nov 6 2014

POM: bump to pom-fiji 5.0
af6eace721a8
·Curtis Rueden on Nov 6 2014, 04:58.

Nov 5 2014

Organize imports
58a8f73c12c8
·Curtis Rueden on Nov 5 2014, 20:23.

Mar 14 2014

Make sure calculated thresholds fit into image data type
5f6dd6d91250
·Tom Kazimiers on Mar 14 2014, 18:51.

Feb 11 2014

Coloc 2: fix flawed bin width calculation
8be1045451c8
·Johannes Schindelin on Feb 11 2014, 02:29.
Kendall Tau: avoid integer overflow
37db684dbfba
·Johannes Schindelin on Feb 11 2014, 02:29.

Jan 29 2014

Use the fast Kendall Tau-b algorithm instead of the naive one
2e678fa6501a
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an efficient implementation of Kendall's Tau-b
a858d5d35bda
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the IntArraySorter class
99a03d970929
·Johannes Schindelin on Jan 29 2014, 20:51.
Make the TwinCursor a PairIterator
4857bff46b04
·Johannes Schindelin on Jan 29 2014, 20:51.
Use better names than getChannel1 and getChannel2
16242ac2e343
·Johannes Schindelin on Jan 29 2014, 20:51.
Add some documentation to the implementation of Kendall's Tau-b
4a716dc8ffc1
·Johannes Schindelin on Jan 29 2014, 20:51.
Introduce the PairIterator
bfd385030886
·Johannes Schindelin on Jan 29 2014, 20:51.
Coloc 2: Add Kendall's Tau-b rank correlation
b6cdb153456d
·Johannes Schindelin on Jan 29 2014, 20:51.

Jul 4 2012

Mavenize Colocalisation_Analysis
642c55aa2288
·Johannes Schindelin on Jul 4 2012, 02:12.

ijp-biop-run-macro/src/main/java/algorithmsmaster509b2f03981089fe300de73…

Nov 20 2016

Nov 15 2016

Sep 19 2015

Sep 2 2015

Aug 30 2015

Jul 29 2015

Feb 12 2015

Feb 4 2015

Jan 27 2015

Jan 25 2015

Jan 20 2015

Nov 6 2014

Nov 5 2014

Mar 14 2014

Feb 11 2014

Jan 29 2014

Jul 4 2012

ijp-biop-run-macro/src/main/java/algorithms
master509b2f03981089fe300de73…