lammps/docmaster
lammps/doc
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
aca16745e4cc | Axel Kohlmeyer | restore spelling fix and semantic fix from upstream | May 19 2017 | |||
a5110d81ea61 | Axel Kohlmeyer | correct a bunch of documentation formatting issues for updated neb and fix neb… | May 19 2017 | |||
d4ee03c778df | Emile Maras | changed doc links | May 18 2017 | |||
8daba0115142 | Emile Maras | some small formating change but does not work anymore | May 18 2017 | |||
640edbc1d40e | Emile Maras | added several features to the NEB | May 18 2017 | |||
b6a70ec6fd74 | Richard Berger | fixup docs after last change | May 12 2017 | |||
c4d0f0709331 | Richard Berger | Allow fix python to only execute every N steps | May 12 2017 | |||
93f603306126 | Richard Berger | Add documentation about fix python | May 12 2017 | |||
27a6371f9b52 | Axel Kohlmeyer | implement a `python source` command as suggested in issue #454 | May 12 2017 | |||
998eb44e836f | sjplimp/GitHub | Merge pull request #473 from akohlmey/compress-for-reaxc-fixes | May 11 2017 | |||
96d1de857539 | sjplimp/GitHub | Merge pull request #471 from akohlmey/fix-4may2017-issues | May 11 2017 | |||
deff6ffaac3b | sjplimp/GitHub | Merge pull request #466 from DallasTrinkle/meam-spline-multicomponent | May 11 2017 | |||
abeb1e096ab6 | Axel Kohlmeyer | add support for gzip compressed output to fix reax/bonds, reax/c/bonds and… | May 10 2017 | |||
29ae8d4ca3b9 | Axel Kohlmeyer | correct broken links and references in documentation | May 9 2017 | |||
08ec55743e47 | Steve Plimpton | neighbor list bugfix to prevent cycle in copy lists | May 9 2017 | |||
f8af7edf927b | Richard Berger | Merge remote-tracking branch 'upstream/master' into python_refactoring | May 6 2017 | |||
51c6d502687b | Steve Plimpton | patch 4May17 | May 4 2017 | |||
dcc5472cba99 | sjplimp/GitHub | Merge pull request #452 from akohlmey/small-fixes-and-updates | May 4 2017 | |||
addd87c0f7a4 | Steve Plimpton | new Section package and start doc pages and build scripts | May 4 2017 | |||
7f49ee8fd747 | Axel Kohlmeyer | print warning about minimization energy with fix box/relax | May 3 2017 | |||
8bddf105bf7a | DallasTrinkle | Updated version of equations, documentation. | Apr 29 2017 | |||
31446e35b9b4 | DallasTrinkle | Cleanup on equations; JPG to be constructed. | Apr 28 2017 | |||
9bdc43bb66ee | DallasTrinkle | Updates to pair/meam/spline documentation. | Apr 28 2017 | |||
a0b61d17b56a | DallasTrinkle | Updates to documentation: equation. | Apr 28 2017 | |||
af748745162c | Axel Kohlmeyer | rename references to USER-CG-CMM to USER-CGSDK | Apr 27 2017 | |||
8f9cb3590a32 | Axel Kohlmeyer | correct units for some improper force constants in docs | Apr 26 2017 | |||
ddc1e4e86ea7 | Axel Kohlmeyer | detect and refuse to run pair style srp together with fix rigid | Apr 25 2017 | |||
396e0b54234d | Axel Kohlmeyer | correct broken link in html bond doc overview | Apr 21 2017 | |||
4e411364ffa4 | Axel Kohlmeyer | add support to pair_modify to selectively disable compute/tally callbacks in… | Apr 21 2017 | |||
dfa9815246c3 | Axel Kohlmeyer | update for fix gle docs from michele ceriotti | Apr 18 2017 | |||
481927ff16ed | Axel Kohlmeyer | correct 'thrid' instead of 'third' | Apr 17 2017 | |||
dd90c860ee62 | Axel Kohlmeyer | refactor msi2lmp documentation to emphasize lack of active development | Apr 17 2017 | |||
c9bc14133537 | Axel Kohlmeyer | remove doc text explaining restrictions that are lifted with the changes in… | Apr 14 2017 | |||
2f32fb7f8bda | Steve Plimpton | patch 13Apr17 | Apr 13 2017 | |||
4da8c1c4e2be | Steve Plimpton | patch 11Apr17 | Apr 11 2017 | |||
49dd9449b875 | Steve Plimpton | fix gcmc updates from Aidan, trimming of output for replica commands | Apr 11 2017 | |||
06cebb9fb4b8 | sjplimp/GitHub | Merge pull request #445 from Pakketeretet2/extract_for_bond | Apr 11 2017 | |||
b9d844ca8dcb | sjplimp/GitHub | Merge pull request #444 from ohenrich/user-cgdna | Apr 11 2017 | |||
84ea8a79e6b2 | Axel Kohlmeyer | correct link for dispersion parameter how-to and reformat | Apr 11 2017 | |||
497a5d88af88 | Oliver Henrich | Merge branch 'master' into user-cgdna | Apr 4 2017 | |||
8993daaa31db | Oliver Henrich | Minor update to docu | Apr 4 2017 | |||
28e86917a05e | Stefan Paquay | Made fix adapt work with bond_harmonic. | Apr 4 2017 | |||
ae56b9ad8915 | Steve Plimpton | patch 31Mar17 for stable release | Mar 30 2017 | |||
c733204a700c | Oliver Henrich | Updated lammps.book and install script | Mar 29 2017 | |||
4b9d0a956632 | Steve Plimpton | sync with SVN | Mar 28 2017 | |||
0637f2387518 | Steve Plimpton | patch 28Mar17 | Mar 28 2017 | |||
9f6e126a2f2e | sjplimp/GitHub | Merge pull request #437 from ohenrich/user-cgdna | Mar 28 2017 | |||
80e5111dcabc | sjplimp/GitHub | Merge pull request #434 from akohlmey/imgflags-in-library | Mar 28 2017 | |||
1d8f0c762d2c | Axel Kohlmeyer | Merge branch 'master' into fixes-for-stable | Mar 28 2017 | |||
111d350a223f | Steve Plimpton | fix gcmc units change for chemical potential | Mar 28 2017 | |||
66a6375405b6 | Oliver Henrich | Resolved merge conflict | Mar 28 2017 | |||
604afebf6fef | Oliver Henrich | Update to oxDNA2 | Mar 28 2017 | |||
8afed61db1c8 | Oliver Henrich | Upgrade to oxDNA2 | Mar 28 2017 | |||
f8da9a866a73 | Axel Kohlmeyer | synchronize dump custom/vtk documentation with that of dump custom | Mar 28 2017 | |||
fc51c38abb2b | Axel Kohlmeyer | add some docs for the special treatment of image flags | Mar 28 2017 | |||
a241b2d0f7c8 | Axel Kohlmeyer | fix problems with references | Mar 27 2017 | |||
61e7595a94bf | Axel Kohlmeyer | remove references to xmovie, streamline dump and viz descriptions | Mar 27 2017 | |||
3dfe4505ddcb | Steve Plimpton | 24Mar17 patch sync with SVN | Mar 24 2017 | |||
394e9b42b06a | Steve Plimpton | new CHARMM pair styles with force swithing/shifting | Mar 24 2017 | |||
f5a85d68add0 | sjplimp/GitHub | Merge pull request #429 from akohlmey/updates-for-stable | Mar 24 2017 | |||
277b93cb8956 | sjplimp/GitHub | Merge pull request #417 from tonnamb/add-pair-zhou | Mar 24 2017 | |||
8820315ff96a | Axel Kohlmeyer | Merge branch 'master' into updates-for-stable | Mar 23 2017 | |||
44841f689127 | Steve Plimpton | fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof | Mar 23 2017 | |||
2cdcd6d63045 | Axel Kohlmeyer | remove one more reference to xmovie | Mar 23 2017 | |||
b88a7496808b | Axel Kohlmeyer | rename a couple more references to pair style zhou into momb | Mar 23 2017 | |||
6d395ec511b3 | Tonnam Balankura | change name zhou to momb in docs, fix grammar | Mar 23 2017 | |||
bf560e78f348 | Tonnam Balankura | edit description and add related commands and default | Mar 22 2017 | |||
1db5834b99d0 | Axel Kohlmeyer | Revert "Cleanup of a few more references to obsoleted and removed tools like… | Mar 22 2017 | |||
3070b043be1b | Axel Kohlmeyer | Revert "correct inconsistent anchors" | Mar 22 2017 | |||
ef3f323fc47d | Axel Kohlmeyer | Revert "remove reference to removed section on VMD scripts" | Mar 22 2017 | |||
43a304f56451 | Axel Kohlmeyer | remove reference to removed section on VMD scripts | Mar 22 2017 | |||
a79aef65e84a | Axel Kohlmeyer | correct inconsistent anchors | Mar 22 2017 | |||
66eb9c248620 | Axel Kohlmeyer | remove reference to removed section on VMD scripts | Mar 22 2017 | |||
a14d58259c3e | Axel Kohlmeyer | correct inconsistent anchors | Mar 22 2017 | |||
127597023df5 | Axel Kohlmeyer | Cleanup of a few more references to obsoleted and removed tools like xmovie | Mar 22 2017 | |||
3ec16f3630c4 | Axel Kohlmeyer | fully integrate support for doc_anchor_check into docs makefile | Mar 22 2017 | |||
cb9059652daa | Axel Kohlmeyer | a few more small changes to integrate pair style zhou properly | Mar 22 2017 | |||
43f27250b5a5 | Axel Kohlmeyer | Merge branch 'add-pair-zhou' of https://github.com/tonnamb/lammps into pull-417 | Mar 22 2017 | |||
c5d561a31260 | Tonnam Balankura | pair_zhou docs: add equation, add link in section_commands and pairs | Mar 22 2017 | |||
743508437575 | Oliver Henrich | Verified oxDNA with modified nucleotide layout | Mar 22 2017 | |||
734e639c5d9d | Axel Kohlmeyer | correct typo reported on lammps-users | Mar 21 2017 | |||
dcede304dff9 | Steve Plimpton | changes for next patch, 2d disc options for spheres, fix external upgrade, bug… | Mar 21 2017 | |||
6482df6c2fbf | Axel Kohlmeyer | remove references to deleted tools. update/clarify section on restart2data | Mar 20 2017 | |||
0c9cd11b4e95 | Axel Kohlmeyer | have the relevant LAMMPS version embedded into top part of the html manual | Mar 20 2017 | |||
3b44c3ff1d5f | Axel Kohlmeyer | remove non-ASCII characters from doc source files | Mar 20 2017 | |||
0d0c2b65f763 | Axel Kohlmeyer | correct stan's email address | Mar 20 2017 | |||
2218a9d704dc | Axel Kohlmeyer | emphasize that the online manual is following the latest development version | Mar 20 2017 | |||
0a6b33cd78a6 | Axel Kohlmeyer | remove duplicate paragraph in nose-hoover fix docs | Mar 20 2017 | |||
52987a36158b | Tonnam Balankura | Started writing pair_zhou.txt | Mar 19 2017 | |||
4a90bca7a3b4 | Steve Plimpton | patch 17Mar17 | Mar 17 2017 | |||
fcc3b3bd365d | sjplimp/GitHub | Merge pull request #421 from akohlmey/memory-output | Mar 17 2017 | |||
53a3877c3d3e | sjplimp/GitHub | Merge pull request #420 from rbberger/doc_anchor_check | Mar 17 2017 | |||
621d7d5ce0f2 | Richard Berger | Correct off-by-one error in line number reported | Mar 17 2017 | |||
1bb9c7da42e5 | Richard Berger | Remove some duplicate anchors in documentation | Mar 17 2017 | |||
f893104b18d1 | Richard Berger | Add anchor_check to doc Makefile | Mar 17 2017 | |||
efb2a942e046 | Richard Berger | Add utility to detect duplicate anchors in documentation files | Mar 17 2017 | |||
070ce33a13df | Axel Kohlmeyer | improve memory usage reporting in info and output class | Mar 16 2017 | |||
f604f86cfcd4 | Axel Kohlmeyer | add fix filter/corotate to some administrative files | Mar 16 2017 | |||
0d8f74f0c52e | Axel Kohlmeyer | Merge branch 'filter_corotate' of https://github.com/lukin17/lammps into pull… | Mar 15 2017 | |||
3a2da51a8210 | sjplimp/GitHub | Merge pull request #413 from ohenrich/user-cgdna | Mar 15 2017 |
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