Diffusion lammps (master) History

lammps/doc
master7025a3f5d17900f2663fc0c…

Sep 14 2016

Updated HTML after latest tool changes and corrections
df304f8ca196
·Richard Berger on Sep 14 2016, 02:22.
Fix bug introduced in latest changes
3c88fa1436ff
·Richard Berger on Sep 14 2016, 02:18.
Fix error in Manual.txt
b7ddc860c7f5
·Richard Berger on Sep 14 2016, 02:00.
Raise exception and output error if ulb,ule and olb,ole are unbalanced
c61d5a1a2959
·Richard Berger on Sep 14 2016, 01:53.
Update unit tests to reflect new behavior
1dc19eceb2d7
·Richard Berger on Sep 14 2016, 01:03.
Add indentation to multi-paragraph entries
ae6b540d3cca
·Richard Berger on Sep 14 2016, 01:03.

Sep 13 2016

Remove references to former empty file
300d1ef52e23
·Richard Berger on Sep 13 2016, 20:17.
remove empty file
633840c87672
·Richard Berger on Sep 13 2016, 19:46.
Created more complete TOC and indices
c44228b0ccec
·Richard Berger on Sep 13 2016, 19:40.
Filter out more header numbers
90f6395ddc58
·Richard Berger on Sep 13 2016, 19:31.
Escape pipe characters
546582ea0251
·Richard Berger on Sep 13 2016, 05:18.
making a few more in-page links unique. some more small corrections and clenups
b76a42d3e0a6
·Axel Kohlmeyer on Sep 13 2016, 01:57.

Sep 12 2016

more doc formatting issues triggering errors/warnings in sphinx
54d5a14fe3d6
·Axel Kohlmeyer on Sep 12 2016, 20:48.
some more smaller doc file cleanups. almost there...
f6efde373083
·Axel Kohlmeyer on Sep 12 2016, 19:37.
more typesetting corrections in docs indicated by sphinx warnings
4c399fc55339
·Axel Kohlmeyer on Sep 12 2016, 18:23.
correct various formatting issues flagged by sphinx
328b7abeaa49
·Axel Kohlmeyer on Sep 12 2016, 05:24.
correct references to Howto subsections
c3de3c142f95
·Axel Kohlmeyer on Sep 12 2016, 05:01.
avoid bad typesetting of include images
80f94c7d0253
·Axel Kohlmeyer on Sep 12 2016, 02:09.
updates in "Getting Started" for running on Windows.
e11bfcf11706
·Axel Kohlmeyer on Sep 12 2016, 02:09.
update html files with recent changes
be1cf40f2be5
·Axel Kohlmeyer on Sep 12 2016, 01:34.
correct and improve typesetting for various sub-sub-subsections in "Getting…
555a02786ddd
·Axel Kohlmeyer on Sep 12 2016, 01:28.
update description of Windows support in "Getting started" Section
cf6f504977cb
·Axel Kohlmeyer on Sep 12 2016, 01:07.
correct and improve links to PyMol and MATLAB
b698f389bc6f
·Axel Kohlmeyer on Sep 12 2016, 00:46.

Sep 11 2016

regenerate html pages with the updated content from the corrections
e96a8a46772c
·Axel Kohlmeyer on Sep 11 2016, 03:15.
correct section link descriptions
f8d5488409e3
·Axel Kohlmeyer on Sep 11 2016, 03:03.
Give credit to Richard for being the lammps.org and senior jenkins wrangler
4d298ccf2fff
·Axel Kohlmeyer on Sep 11 2016, 02:18.
place ellipses in square brackets to avoid sphinx choking on them
cb3044091ca7
·Axel Kohlmeyer on Sep 11 2016, 02:05.

Sep 8 2016

Merge pull request #24 from rbberger/info_command_styles
b866e0663b9f
·sjplimp / GitHub on Sep 8 2016, 22:16.
Merge pull request #23 from akohlmey/doc-corrections-and-updates
5d0da95a0b6d
·sjplimp / GitHub on Sep 8 2016, 22:15.
Update generated HTML docs of info command
1f901c9b2daa
·Richard Berger on Sep 8 2016, 15:53.
Update docs of info command
79b8f6320d62
·Richard Berger on Sep 8 2016, 15:53.

Sep 7 2016

correct internal links for Modify LAMMPS section
0fe7d1d3612c
·Axel Kohlmeyer on Sep 7 2016, 16:13.
correct reference in modify section
346ff4249833
·Axel Kohlmeyer on Sep 7 2016, 16:10.
regenerate html pages with new txt2rst tool
5feedbd8291d
·Axel Kohlmeyer on Sep 7 2016, 16:09.
replace backquote with regular quote and `` + '' with double quote.
44ce6fac4b91
·Axel Kohlmeyer on Sep 7 2016, 14:29.
Update discussion on parallel python packages. There seem to be only two left.
70d6718aa312
·Axel Kohlmeyer on Sep 7 2016, 13:42.
Make formatting and links more consistent and unique
348b677148ce
·Axel Kohlmeyer on Sep 7 2016, 13:41.
Enforce l,ule or l,ole command order for RST
4c783ea3b726
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Refactored code and escape RST special character '_'
9e8256aeb0b7
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '^' and take care of special math cases
925f1bfb6fc9
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '*' in final output
3f312244a01d
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
replace :l,ule and :l,ole with :l :ule or :l :ole
55022d126306
·Axel Kohlmeyer on Sep 7 2016, 08:11.
avoid Inline substitution_reference start-string without end-string
0d491d483c23
·Axel Kohlmeyer on Sep 7 2016, 08:10.
correct error message text, sync with source
a31c5073706c
·Axel Kohlmeyer on Sep 7 2016, 04:15.
update colvars library to version 2016-08-19
16607a0132d5
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update colvars to version 2016-08-10
ec2a6b9f0de3
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update manual introduction to represent current status. correct some markup to…
fc2d87830538
·Axel Kohlmeyer on Sep 7 2016, 03:20.
Merge branch 'integration' into doc-corrections-and-updates
1c17b9850056
·Axel Kohlmeyer on Sep 7 2016, 02:19.
Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up…
ace5dc3c7c9a
·Axel Kohlmeyer on Sep 7 2016, 01:54.
sync with 7Sep16 patch
0252347d43c5
·Steve Plimpton on Sep 7 2016, 01:00.
Merge pull request #20 from akohlmey/lammps-contribute
c9455c90dee3
·sjplimp / GitHub on Sep 7 2016, 00:55.

Sep 6 2016

one more small correction to document recent fix ave/time changes
42db93e1980b
·Axel Kohlmeyer on Sep 6 2016, 22:10.
fix typos
906bd2454318
·Axel Kohlmeyer on Sep 6 2016, 22:03.
update the discussion on how to submit modifications
4f88c7540152
·Axel Kohlmeyer on Sep 6 2016, 22:02.
generate updated html files for corrected .txt files
1a7b04e8a613
·Axel Kohlmeyer on Sep 6 2016, 19:40.
correct link targets
fbc955e5492c
·Axel Kohlmeyer on Sep 6 2016, 19:40.
add pppm/kk and fix reax/c issues
3bb3c1a45c81
·Steve Plimpton on Sep 6 2016, 18:46.

Sep 1 2016

mention stable releases
431d1a6dae03
·Axel Kohlmeyer on Sep 1 2016, 08:37.
synchronize LAMMPS developer list with webpage and move ray to "past"
ab84acc2cdfc
·Axel Kohlmeyer on Sep 1 2016, 08:26.
replace :ule,l and :ole,l with :l<br>:ule and :l<br>:ole
fc093a0aab17
·Axel Kohlmeyer on Sep 1 2016, 08:07.
add new commands to lammps.book
5e6dff36e4e1
·Axel Kohlmeyer on Sep 1 2016, 08:01.
generate updated html files for corrected .txt files
7de57ffd94b3
·Axel Kohlmeyer on Sep 1 2016, 06:02.
correct link targets
ff75cf51bb5f
·Axel Kohlmeyer on Sep 1 2016, 06:01.
Merge pull request #17 from akohlmey/small-doc-fixes
fb2c18ee8872
·sjplimp / GitHub on Sep 1 2016, 03:57.
removing searchindex.js
de0036fafd07
·Steve Plimpton on Sep 1 2016, 03:52.
include autogenerated html code
c3c9788dc72c
·Axel Kohlmeyer on Sep 1 2016, 03:49.
Merge branch 'integration' into small-doc-fixes
2abd5ad28ae2
·Axel Kohlmeyer on Sep 1 2016, 03:42.
small changes to doc page
de21cb2cd596
·Steve Plimpton on Sep 1 2016, 00:16.
Merge branch 'core/cpp_exceptions' of https://github.com/rbberger/lammps into…
639ab0fd3e37
·Steve Plimpton on Sep 1 2016, 00:11.
bad file?
6c65af710c01
·Steve Plimpton on Sep 1 2016, 00:10.

Aug 31 2016

corrections for various compute something/chunk examples
29e480ad666c
·Axel Kohlmeyer on Aug 31 2016, 23:31.
sync with SVN
7c01ef57eeb0
·Steve Plimpton on Aug 31 2016, 23:17.
Merge pull request #6 from akohlmey/manifold-doc-update
f89448d73c91
·sjplimp / GitHub on Aug 31 2016, 22:53.
sync w/ SVN
ad879d97dbfe
·Steve Plimpton on Aug 31 2016, 22:29.
Merge branch 'small' into integration
4051aedf2c78
·Steve Plimpton on Aug 31 2016, 21:58.
sync with SVN
ec8b9e21dbb4
·Steve Plimpton on Aug 31 2016, 21:28.
Remove no longer needed generated files in doc
1986eda4d5f1
·Richard Berger on Aug 31 2016, 06:36.
Use Google Custom Search API for searching in docs
e71fafdd256c
·Richard Berger on Aug 31 2016, 06:28.

Aug 28 2016

updated doc build readme for current Fedora and RHEL/CentOS
56d0ab947412
·Axel Kohlmeyer on Aug 28 2016, 20:20.
Merge branch 'integration' into small-bugfixes
f8d6b979ec1a
·Axel Kohlmeyer on Aug 28 2016, 20:16.
Added documentation about -DLAMMPS_EXCEPTIONS flag
f5a50c3cd1c8
·Richard Berger on Aug 28 2016, 04:13.
sync with SVN
3a1397dc7c36
·Steve Plimpton on Aug 28 2016, 01:11.
Merge pull request #9 from rbberger/remove_sha1sum_dependency
0c2e643062ac
·sjplimp / GitHub on Aug 28 2016, 01:02.
new fix flow/gauss command
c80dad002883
·Steve Plimpton on Aug 28 2016, 00:25.

Aug 26 2016

improved .gitignore files to show only changes in relevant folders and files
9be235d87258
·Axel Kohlmeyer on Aug 26 2016, 20:34.
removal of doc/html/_sources and minor sync with SVN
2beecd1e7351
·Steve Plimpton on Aug 26 2016, 19:34.
Add MacOS X instructions to doc generation README
95aabdf51a96
·Richard Berger on Aug 26 2016, 16:08.
Remove sha1sum dependency for doc generation
ea368919f3b5
·Richard Berger on Aug 26 2016, 06:01.

Aug 25 2016

Small update for USER-MANIFOLD docs.
b8e7f5301702
·Stefan Paquay / Axel Kohlmeyer on Aug 25 2016, 05:36.
fix typo in compute omega/chunk usage example
ff541e9a8499
·Axel Kohlmeyer on Aug 25 2016, 05:04.

Aug 24 2016

doc files
e27196e91c96
·Steve Plimpton on Aug 24 2016, 00:28.

Aug 23 2016

Merge branch 'integration' into small-bugfixes
270b07b03537
·Steve Plimpton on Aug 23 2016, 23:35.
fixed integer division problem in python code snippet
55fe1f6b29cc
·athomps on Aug 23 2016, 00:35.

Aug 22 2016

thread timing summare needs to be marked as preformatted
c88e9b46cf97
·Axel Kohlmeyer on Aug 22 2016, 20:35.

Aug 21 2016

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15484 f3b2605a-c512-4ea7…
2fff78a78eb2
·sjplimp on Aug 21 2016, 00:43.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15482 f3b2605a-c512-4ea7…
ccf8cf20b378
·sjplimp on Aug 21 2016, 00:42.

Aug 13 2016

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15479 f3b2605a-c512-4ea7…
b1829c107cd0
·sjplimp on Aug 13 2016, 17:03.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15475 f3b2605a-c512-4ea7…
832f6a9f1125
·sjplimp on Aug 13 2016, 16:52.

Aug 12 2016

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15471 f3b2605a-c512-4ea7…
c03252f08da0
·sjplimp on Aug 12 2016, 16:34.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15469 f3b2605a-c512-4ea7…
112c98159b1c
·sjplimp on Aug 12 2016, 15:49.

lammps/docmaster7025a3f5d17900f2663fc0c…

Sep 14 2016

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Aug 12 2016

lammps/doc
master7025a3f5d17900f2663fc0c…