Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src/database
masterac55e834f6f0c8523dda25a…

Jan 27 2016

impr:database reader common uses algorithms from utils::
efb3275855d3
·fabien on Jan 27 2016, 17:44.

Jan 22 2016

fix export symbols in hdf5/database
2c081b5b7f51
·fabien on Jan 22 2016, 04:04.

Jan 11 2016

fix: really remove boost
6d5ec1599a47
·fabien on Jan 11 2016, 20:18.

Jan 3 2016

license: modify license to include year 2016
235eaf0b5b35
·fabien on Jan 3 2016, 00:04.

Dec 28 2015

fix: segmentation error with gcc 5.3 due to change in std::string
642cf1814bcb
·fabien on Dec 28 2015, 19:25.

Dec 19 2015

impr: fix compilation warning (gcc and clang)
61a1e89e1271
·fabien on Dec 19 2015, 21:11.

Dec 16 2015

doc: remove lots of warning in doc generation
9d4326f47013
·fabien on Dec 16 2015, 17:49.

Dec 10 2015

impr: use the new RangeIterator class
4081f679f7ae
·fabien on Dec 10 2015, 20:29.

Nov 25 2015

fix: fix hdf5 cmake include dirs/definitions, yes again...
f77af9a60aa4
·fabieng on Nov 25 2015, 05:24.
fix: fix include dir hdf5 (second)
82934be6a211
·fabien on Nov 25 2015, 04:26.
fix: correct include directories for HDF5
6c0ef321bcf9
·fabien on Nov 25 2015, 04:11.

Nov 15 2015

Feat: save database labels in HDF5 file
f79a6c9e55fb
·fabien on Nov 15 2015, 21:43.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

feat: add assert macro to check bounds of species in database
7689fcf7d1fd
·fabien on Jul 15 2015, 23:40.

Jul 13 2015

database api : improve
dfe1eaf99c56
·fabien on Jul 13 2015, 18:08.

Jun 29 2015

impr: add a base class for a class containing the database
454602ca96d0
·fabien on Jun 29 2015, 23:10.
impr: add functions to find class and properties of aqueous/solid phases
3ed7f43ef718
·fabien on Jun 29 2015, 23:06.
impr: Add errors for every species if label is invalid
8bbfbc127ea9
·fabien on Jun 29 2015, 22:59.

Jun 25 2015

Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.
fix: remove output when checking equation
e531335c0c1f
·branch: database
·fabien on Jun 25 2015, 19:10.
feat: check formula/equation for compounds, gas and solid phases
d006aa1ac9f9
·fabien on Jun 25 2015, 18:59.

Jun 24 2015

feat: Check composition (break ABI)
036ce82ebfe8
·fabien on Jun 24 2015, 22:44.
Label parser for the element composition
b9da1cfa8545
·fabien on Jun 24 2015, 22:37.

Jun 22 2015

Add an option to remove half-cell reaction in configuration
08252559070d
·fabien on Jun 22 2015, 20:27.

Jun 12 2015

Fix report of wrong label for the composition in the database
3867cdd1bfe7
·fabien on Jun 12 2015, 20:29.
Add option to remove all half-cells reactions
f3e5ca061b88
·fabien on Jun 12 2015, 20:28.

Jun 10 2015

Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fixes in the database module
54c13dbb2616
·fabien on Jun 10 2015, 16:17.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
The database writer is now using the yaml api
eb6ac2b2a0e3
·fabien on Jun 9 2015, 00:14.

Jun 8 2015

Add a YAML reader for the database
3bce4fde6bb4
·fabien on Jun 8 2015, 19:45.

Jun 6 2015

Correct bug in the database writer
f7dce508a58b
·fabien on Jun 6 2015, 20:02.
Add a list of element list in the database
1300961d6545
·fabien on Jun 6 2015, 20:02.

Jun 2 2015

Modify molar_mass_<species> in DataContainer
7d1722d5bb0f
·fabien on Jun 2 2015, 16:30.

May 28 2015

Add database compounds
1c4ac43c0eff
·fabien on May 28 2015, 22:40.

May 26 2015

Improve symbol exports in shared libraries
4f50ed8f52d4
·fabien on May 26 2015, 15:44.

May 25 2015

forward declaration of YAML::Node in db conf
36ba3a378a95
·fabien on May 25 2015, 21:23.

May 24 2015

Database configuration
8125b93b7f67
·fabien on May 24 2015, 22:50.

May 18 2015

Cmake files again
debf6abf5a42
·fabien on May 18 2015, 17:10.
Add lto flags
a4fe4c3a589a
·fabien on May 18 2015, 00:39.

May 13 2015

Namespace documentation
ef44ef6723d3
·fabien on May 13 2015, 15:36.

May 12 2015

Rename the method to save the database in a JSON file
833d04b69fff
·fabien on May 12 2015, 04:18.

May 4 2015

Add DatabaseWriter module
38536acf95fd
·fabien on May 4 2015, 15:44.
Add missing method in DataContainer
320805e68161
·fabien on May 4 2015, 15:42.

May 3 2015

The basis in the JSON database does not have to be ordered anymore
e3aed6f39085
·fabien on May 3 2015, 23:34.
Add the specmicp_common library
ff0d0fbcfe7b
·fabien on May 3 2015, 22:19.

Apr 29 2015

Database reader : test of charge balance
5f94039643c1
·georget on Apr 29 2015, 22:39.

Apr 28 2015

clean the database API
498ace618930
·fabien on Apr 28 2015, 23:10.
CmakeLists fixes/enhancements
3d80bf60e333
·fabien on Apr 28 2015, 16:19.
Set the visibility flags for the database library
2553b8ca7134
·fabien on Apr 28 2015, 04:10.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.
Add a hash in the database
fbbaf4c5659e
·fabien on Apr 27 2015, 00:16.

Apr 23 2015

correct const correctness for swap_components()
db18755be7ec
·fabien on Apr 23 2015, 00:22.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 19 2015

Update jsoncpp to version 1.6.2
d22a20e5775c
·fabien on Apr 19 2015, 22:01.
Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.

Apr 17 2015

Evening doc, tired duck
c017dd3a0e61
·fabien on Apr 17 2015, 01:55.

Apr 16 2015

Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.
Documentation for the database/species module
94f086f45381
·fabien on Apr 15 2015, 04:29.
The hashing fn does not be to be in every list
9641dcf37708
·fabien on Apr 15 2015, 04:02.

Apr 13 2015

Continue refactoring of Database reader
cfebef7a040e
·fabien on Apr 13 2015, 04:36.
Refactor database reader
14493d59dde5
·fabien on Apr 13 2015, 00:05.

Apr 6 2015

Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 1 2015

Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.

Mar 26 2015

Udpdate license text in database module
b264515ec25e
·fabien on Mar 26 2015, 20:31.
Small optimization, avoid checking and scaling the molar volumes too many times…
0174eeb1cf69
·fabien on Mar 26 2015, 18:43.

Mar 25 2015

Minor changes/bug fixes in the database module
1cd97637d904
·fabien on Mar 25 2015, 20:20.
Small correction to allow compilation with gcc 4.8.3
ac7ea29f1b9b
·georget on Mar 25 2015, 16:18.
Bug fixes and minor improvements in the database module
87fc4962ea72
·fabien on Mar 25 2015, 14:38.

Mar 24 2015

Improves the database
c2a8ab6f9a8e
·fabien on Mar 24 2015, 18:38.

Mar 19 2015

include half-cells reaction in the database
ce7cf38633f9
·fabien on Mar 19 2015, 19:39.

Feb 22 2015

Add two functions in DatabaseSelector : - Remove all minerals in the…
dd2b91d3795d
·fabien on Feb 22 2015, 22:18.

Feb 16 2015

add a check in database reader to ensure the the number of sites occupied by a…
5546ccd49e01
·fabien on Feb 16 2015, 18:28.

Feb 13 2015

Free sorption sites is no longer a component
a8c4203fea6b
·fabien on Feb 13 2015, 16:13.

Feb 10 2015

add support for sorped species in the database
298190351669
·fabien on Feb 10 2015, 15:22.

Jan 15 2015

add member function in database::Database to keep only certain minerals (given…
c4a87185190b
·fabien on Jan 15 2015, 22:15.

Dec 3 2014

add member 'gas_label_to_id' in DatabaseModule to retrieve id of a gas
670db7099f20
·fabien on Dec 3 2014, 20:21.

Dec 2 2014

Add a method to remove all gases in the SelectorDatabase module
56e9b0f63246
·fabien on Dec 2 2014, 22:41.

Nov 22 2014

add more methods to the database which can take units as argument
81a129921f3f
·fabien on Nov 22 2014, 01:27.

Nov 21 2014

add decimeter as a length unit (for liter)
101e1e70dfc5
·fabien on Nov 21 2014, 16:08.

Nov 20 2014

add a molar_mass_basis function adjustable to the unit in the database
c1d916f6a6a8
·fabien on Nov 20 2014, 02:37.

Nov 19 2014

add support for units in database
a80d7faccc53
·fabien on Nov 19 2014, 16:19.

Nov 17 2014

style
811727685964
·fabien on Nov 17 2014, 20:56.

Nov 11 2014

update database reader to use the 3d party jsoncpp lib
71533d2f738a
·fabien on Nov 11 2014, 21:59.

Oct 10 2014

add support for not dissolving/not precipitating minerals in database
4607780abc35
·fabien on Oct 10 2014, 19:51.

Oct 6 2014

update database, micpsolver and specmicp to use common.hpp
c7ac0a493911
·fabien on Oct 6 2014, 21:13.
add common.hpp, modify database module to use it
eb7779e20fdf
·fabien on Oct 6 2014, 15:30.

Sep 10 2014

Merge branch 'reactivetransport'
fe4a3c6ffe37
·fabien on Sep 10 2014, 03:39.
remove thermodata.hpp, use DataContainer in reduced solver
8d16e3a0c811
·fabien on Sep 10 2014, 03:35.
add range support in database::DataContainer
4873112352b5
·fabien on Sep 10 2014, 02:12.

Aug 19 2014

comment and docs for database modules
d08941d1b3b4
·fabien on Aug 19 2014, 17:33.

Aug 18 2014

change copyright
be84b355a07d
·fabien on Aug 18 2014, 16:50.
after a long absence, start cleaning
768489c0ad3e
·fabien on Aug 18 2014, 16:07.

Jun 16 2014

start support of gas phase in database
392b50f45f16
·georget on Jun 16 2014, 21:36.

Jun 5 2014

add source file for data_container...
f5ff5181ce69
·georget on Jun 5 2014, 20:43.
add support for molar volume of minerals
9bb9fb95bbcf
·georget on Jun 5 2014, 17:24.
add support for molar mass
bfff495f16bd
·georget on Jun 5 2014, 05:15.