Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src/specmicp/adimensional
master

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

Apr 28 2017

minor: format fix
338641c069f9
·georget on Apr 28 2017, 20:34.

Feb 3 2017

specmicp: move AdimSolutionSolver to specmicp::io
c0bc1498b349
·georget on Feb 3 2017, 17:00.

Jan 27 2017

specmicp: fix uninitialized variables
a30360d1e053
·georget on Jan 27 2017, 21:33.

Jan 3 2017

Fix for build with gcc 4.9.2 (debian 8)
a8288920e6fe
·georget on Jan 3 2017, 14:34.

Nov 23 2016

fix:specmicp correct porosity computation in residual
c3cae15edbf6
·georget on Nov 23 2016, 16:21.
minor:specmicp initialization random generator
42d1352287f2
·georget on Nov 23 2016, 16:18.
fix:specmicp : correct C->K conversion
4e045d7518d2
·georget on Nov 23 2016, 16:16.

Sep 21 2016

specmicp: fix no precipitation in adim solver
539807e728a9
·georget on Sep 21 2016, 19:14.

Sep 19 2016

specmicp: add mineral upper bound in ReactantBox
166fda7bb141
·georget on Sep 19 2016, 03:39.

Sep 18 2016

specmicp solver : add upper bound on minerals
4837d2ea3d06
·georget on Sep 18 2016, 04:18.

Aug 30 2016

specmicp: add configuration for fixed saturation equation
97deef116070
·georget on Aug 30 2016, 19:34.
specmicp: Add a fixed saturation equation
5821dfca248c
·georget on Aug 30 2016, 17:05.

Jul 29 2016

specmicp Vectorise debye-huckel computation
b65fcb5110b5
·georget on Jul 29 2016, 21:53.

Jul 22 2016

fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

May 25 2016

fix:specmicp add move constructor to extractor
afa831028047
·georget on May 25 2016, 03:33.

May 22 2016

specmicp: remove deprecated methods (AdimExtractor)
d9d18912c2b4
·georget on May 22 2016, 22:20.
specmicp: update default starting guess
18558bda9f4f
·georget on May 22 2016, 17:44.

May 6 2016

fix:solver fix commit 46ff29c and tests
73b62312473f
·georget on May 6 2016, 21:40.
api:specmicp:solver clean adimensional solver
a07f579e9946
·georget on May 6 2016, 21:19.

May 3 2016

impr:specmicp allow retrieving solution in unsafe mode
f96bf7686096
·georget on May 3 2016, 22:25.

May 2 2016

grammar:specmicp Rename initialise_ to initialize_
8a7b57ade258
·georget on May 2 2016, 21:27.

Apr 6 2016

Compute the total concentration vector
e37f8beae96e
·georget on Apr 6 2016, 19:20.

Apr 4 2016

impr:specmicp:extractor add total_solid_mass_concentration getter function
8da77adabb31
·georget on Apr 4 2016, 18:02.

Mar 31 2016

impr:specmicp:extractor compute total mass concentration
45661894a19a
·georget on Mar 31 2016, 02:35.

Mar 18 2016

impr:specmicp:extractor add cache for unit conversions
20f010b038f7
·georget on Mar 18 2016, 19:30.

Mar 16 2016

fix:specmicp millimoles unit now works !
4412fddf1e1c
·georget on Mar 16 2016, 15:26.

Mar 11 2016

upd:specmicp adim system used new moles unit
1ecc67c5bb68
·georget on Mar 11 2016, 00:50.

Feb 26 2016

impr:specmicp only solve pressure model if we solve non ideality model
2c3c47ab3079
·georget on Feb 26 2016, 17:16.
impr:specmicp add options to specify restart water volume fraction
70236c20c4d2
·georget on Feb 26 2016, 16:43.

Feb 7 2016

impr:organization make specmicp use new orga of specmicp_{common,database}
98cba15aaf10
·georget on Feb 7 2016, 17:08.

Jan 19 2016

APIChange:fix: adimensionnal solver -> pass raw shared_pointer
7b0242e05b16
·fabien on Jan 19 2016, 18:49.

Jan 3 2016

license: modify license to include year 2016
235eaf0b5b35
·fabien on Jan 3 2016, 00:04.

Dec 29 2015

impr:specmicp style in jacobian water AdimSystem
2d6d6d0be31b
·fabien on Dec 29 2015, 04:46.

Dec 16 2015

doc: remove lots of warning in doc generation
9d4326f47013
·fabien on Dec 16 2015, 17:49.

Nov 11 2015

impr: AdimensionalExtractor can now return a copy of the solution
f0a961c3d86d
·fabien on Nov 11 2015, 21:54.

Sep 29 2015

refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.

Sep 9 2015

fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.

Jul 20 2015

fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.

Jun 25 2015

Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.

Jun 22 2015

Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.

Jun 10 2015

Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Move AdimensionalSystemSolverSaver to YAML formatting
f28c1c458a8b
·fabien on Jun 9 2015, 05:53.

Jun 2 2015

Modify molar_mass_<species> in DataContainer
7d1722d5bb0f
·fabien on Jun 2 2015, 16:30.

May 13 2015

Use macro to define default options for SpecMiCP
8b7823715ed7
·fabien on May 13 2015, 01:02.

May 5 2015

I forgot the secondary aqueous species in the solution saver....
bdda0cd099d0
·fabien on May 5 2015, 15:00.

May 3 2015

Add the specmicp_common library
ff0d0fbcfe7b
·fabien on May 3 2015, 22:19.

May 1 2015

Corret symbol export in serializer
7e7e298a6160
·fabien on May 1 2015, 00:15.
Add a serializer for AdimensionalSystemSolution
583eb2cd10a4
·fabien on May 1 2015, 00:09.

Apr 30 2015

Minor fixes/documentation in Specmicp
8dd3dcc176c6
·fabien on Apr 30 2015, 04:03.
Add a fixed molality constraints in AdimensionalSystem
eee5a564c204
·fabien on Apr 30 2015, 00:29.

Apr 28 2015

Set the visibility flags for the Specmicp library
7df477fd05e4
·fabien on Apr 28 2015, 04:53.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.

Apr 23 2015

Fixes minor problems found with the new SANITIZER build type
ecc68045c31e
·fabien on Apr 23 2015, 05:34.
Use small step by default in AdimensionalSystemSolver
9f4ca7e6c456
·fabien on Apr 23 2015, 00:23.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.

Apr 20 2015

Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.

Apr 16 2015

Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.

Apr 11 2015

Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.

Apr 1 2015

Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.

Mar 27 2015

fixes commit 0174eeb
665b1c9415f6
·fabien on Mar 27 2015, 16:10.

Mar 26 2015

Small optimization, avoid checking and scaling the molar volumes too many times…
0174eeb1cf69
·fabien on Mar 26 2015, 18:43.
Intern refactoring of AdimensionalSystem
33d3d8b8a771
·fabien on Mar 26 2015, 15:30.

Mar 25 2015

Disable bulk copy of variables for now - to fix
fa87e6334e88
·fabien on Mar 25 2015, 20:38.
Update the adimensional system for the new database module
c6b716588c1d
·fabien on Mar 25 2015, 14:45.

Mar 17 2015

add a convenience function in specmicp adimensional solver to solve a system
f952caf0c318
·fabien on Mar 17 2015, 15:46.

Mar 13 2015

Update headers in the src/specmicp/adimensional files
e94e903fe893
·fabien on Mar 13 2015, 04:22.
Disable the descent condition in the AdimensionalSystemSolver.
8e74befa1920
·fabien on Mar 13 2015, 04:21.
Add a return value (boolean) in the AdimensionalSystemPCFM::check_validity
5e764b31a7c6
·fabien on Mar 13 2015, 04:18.
Add a threshold for including the component in the computation in…
f5f97272d811
·fabien on Mar 13 2015, 02:53.

Feb 28 2015

Randomize the restarting guess in AdimensionalSystem.
9cf41f6dfb45
·fabien on Feb 28 2015, 23:31.

Feb 27 2015

Add a validity check (just print warning and or error for the PCFM method…
bddaf0d936da
·fabien on Feb 27 2015, 16:02.

Feb 25 2015

Correct the AdimensionalSystem jacobian, fixes issue #29
0b1682bb59f9
·fabien on Feb 25 2015, 23:46.
Correct the surface model, so the activity are defined with respect to the…
ac9b4eb735f4
·fabien on Feb 25 2015, 14:53.

Feb 24 2015

Correct porosity computation, minerals offset
a4055a6a6783
·fabien on Feb 24 2015, 16:07.

Feb 23 2015

Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages…
d76c3f21bd38
·fabien on Feb 23 2015, 20:17.
Correct jacobian computation (both analytical and finite difference) in…
8b5357988ba5
·fabien on Feb 23 2015, 20:17.