Diffusion SpecMiCP / ReactMiCP (reactmicp/unsaturated) History

unsaturatedd274109c12fcdbdb38b00ed…

Nov 15 2015

fix: export symbols of hdf5 functions
307c69a60f2b
·fabien on Nov 15 2015, 22:36.
fix: consistent API, name is before section in save_*() in HDF5 format
7d858caaf955
·fabien on Nov 15 2015, 21:43.
Fix : HDF5 : Hide implementation symbols
9f2a62399b3d
·fabien on Nov 15 2015, 21:43.
feat: save adimensional system solution in hdf5
28a4bc161e9f
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

impr: AdimensionalExtractor can now return a copy of the solution
f0a961c3d86d
·fabien on Nov 11 2015, 21:54.

Sep 29 2015

refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.

Sep 9 2015

fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.

Jul 20 2015

fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.

Jun 25 2015

Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.

Jun 22 2015

Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.
Remove print statement
84f2ee511d2e
·fabien on Jun 22 2015, 20:55.
Add a function to print the constraints
0a4a5f442443
·fabien on Jun 22 2015, 20:30.
Fix bug in SpecMiCP configuration
a01084ae1afa
·fabien on Jun 22 2015, 20:26.

Jun 19 2015

Do not remove H[+]/HO[-] when dissolving system
28fbffc41fa8
·fabien on Jun 19 2015, 23:06.

Jun 10 2015

Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Move AdimensionalSystemSolverSaver to YAML formatting
f28c1c458a8b
·fabien on Jun 9 2015, 05:53.

Jun 8 2015

Update configurations to use the new updates in YAML module
35f1ce4a8720
·fabien on Jun 8 2015, 19:44.

Jun 5 2015

Add more constraints configuration
e809292d7440
·branch: configuration
·fabien on Jun 5 2015, 16:47.
Start implementing constraints configuration in SpecMiCP
88a299bc1607
·fabien on Jun 5 2015, 04:15.
Add Configuration for formulation
7178ca623984
·fabien on Jun 5 2015, 03:38.

Jun 2 2015

Modify molar_mass_<species> in DataContainer
7d1722d5bb0f
·fabien on Jun 2 2015, 16:30.

May 29 2015

Add an option to not modify the database in the dissolver
202e336d65a6
·fabien on May 29 2015, 05:01.

May 28 2015

Use the compounds in the dissolver
fd28a36ed4a4
·fabien on May 28 2015, 22:57.

May 18 2015

Add lto flags
a4fe4c3a589a
·fabien on May 18 2015, 00:39.

May 13 2015

Namespace documentation
ef44ef6723d3
·fabien on May 13 2015, 15:36.
Use macro to define default options for SpecMiCP
8b7823715ed7
·fabien on May 13 2015, 01:02.

May 5 2015

I forgot the secondary aqueous species in the solution saver....
bdda0cd099d0
·fabien on May 5 2015, 15:00.

May 3 2015

Add the specmicp_common library
ff0d0fbcfe7b
·fabien on May 3 2015, 22:19.

May 1 2015

Corret symbol export in serializer
7e7e298a6160
·fabien on May 1 2015, 00:15.
Add a serializer for AdimensionalSystemSolution
583eb2cd10a4
·fabien on May 1 2015, 00:09.

Apr 30 2015

Minor fixes/documentation in Specmicp
8dd3dcc176c6
·fabien on Apr 30 2015, 04:03.
Add a fixed molality constraints in AdimensionalSystem
eee5a564c204
·fabien on Apr 30 2015, 00:29.

Apr 28 2015

CmakeLists fixes/enhancements
3d80bf60e333
·fabien on Apr 28 2015, 16:19.
Set the visibility flags for the Specmicp library
7df477fd05e4
·fabien on Apr 28 2015, 04:53.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.

Apr 23 2015

Fixes minor problems found with the new SANITIZER build type
ecc68045c31e
·fabien on Apr 23 2015, 05:34.
Use small step by default in AdimensionalSystemSolver
9f4ca7e6c456
·fabien on Apr 23 2015, 00:23.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 20 2015

Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.

Apr 16 2015

Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.

Apr 11 2015

Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.

Apr 2 2015

Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.

Apr 1 2015

Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.

Mar 27 2015

fixes commit 0174eeb
665b1c9415f6
·fabien on Mar 27 2015, 16:10.

Mar 26 2015

Small optimization, avoid checking and scaling the molar volumes too many times…
0174eeb1cf69
·fabien on Mar 26 2015, 18:43.
Intern refactoring of AdimensionalSystem
33d3d8b8a771
·fabien on Mar 26 2015, 15:30.

Mar 25 2015

Disable bulk copy of variables for now - to fix
fa87e6334e88
·fabien on Mar 25 2015, 20:38.
Update the adimensional system for the new database module
c6b716588c1d
·fabien on Mar 25 2015, 14:45.

Mar 24 2015

Remove the ReducedSystem
7f9de8ece968
·fabien on Mar 24 2015, 19:04.

Mar 17 2015

add a convenience function in specmicp adimensional solver to solve a system
f952caf0c318
·fabien on Mar 17 2015, 15:46.

Mar 13 2015

Update headers in the src/specmicp/adimensional files
e94e903fe893
·fabien on Mar 13 2015, 04:22.
Disable the descent condition in the AdimensionalSystemSolver.
8e74befa1920
·fabien on Mar 13 2015, 04:21.
Add a return value (boolean) in the AdimensionalSystemPCFM::check_validity
5e764b31a7c6
·fabien on Mar 13 2015, 04:18.
Add a threshold for including the component in the computation in…
f5f97272d811
·fabien on Mar 13 2015, 02:53.

Feb 28 2015

Randomize the restarting guess in AdimensionalSystem.
9cf41f6dfb45
·fabien on Feb 28 2015, 23:31.

Feb 27 2015

Add a validity check (just print warning and or error for the PCFM method…
bddaf0d936da
·fabien on Feb 27 2015, 16:02.

Feb 25 2015

Correct the AdimensionalSystem jacobian, fixes issue #29
0b1682bb59f9
·fabien on Feb 25 2015, 23:46.
Correct the surface model, so the activity are defined with respect to the…
ac9b4eb735f4
·fabien on Feb 25 2015, 14:53.

Feb 24 2015

Correct porosity computation, minerals offset
a4055a6a6783
·fabien on Feb 24 2015, 16:07.

Feb 23 2015

Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages…
d76c3f21bd38
·fabien on Feb 23 2015, 20:17.
Correct jacobian computation (both analytical and finite difference) in…
8b5357988ba5
·fabien on Feb 23 2015, 20:17.
Improve initialisation of surface model in AdimensionalSystemConstraints
d39cf3d5d38a
·fabien on Feb 23 2015, 04:18.
AdimensionalSystemSolver variable initalization : change…
59f0bfff78d5
·fabien on Feb 23 2015, 04:13.
documentation fixes for AdimensionalSystemNumbering
69652eb35705
·fabien on Feb 23 2015, 04:10.
Add a function in AdimensionalSystem that return the surface sorption model
4338212826c9
·fabien on Feb 23 2015, 04:09.

Feb 17 2015

include the pcfm method to the AdimensionalSystemSolver
2d49c2d3302a
·fabien on Feb 17 2015, 04:45.
Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the…
c7608a0ce239
·fabien on Feb 17 2015, 04:44.
Documentation for AdimensionalSystem
8ecff9b7f967
·fabien on Feb 17 2015, 04:42.

Feb 16 2015

add numbering of secodnary species and activity coefficients in…
08d31233017d
·fabien on Feb 16 2015, 16:10.
Add functions for custom initialisation of the main variables
2e391aab5671
·fabien on Feb 16 2015, 15:57.
reuse already defined function to compute the total solid concentration of a…
78836305e4b0
·fabien on Feb 16 2015, 15:56.
Use the new AdimensionalSystemNumbering Base clase in the…
680ccde7e3f4
·fabien on Feb 16 2015, 15:52.
externalize the dof numberign of the AdimensionalSystem, so it can be used by…
31d88c30dde8
·fabien on Feb 16 2015, 15:46.

specmicp/src/specmicpreactmicp/unsaturatedd274109c12fcdbdb38b00ed…

Nov 15 2015

Nov 11 2015

Sep 29 2015

Sep 26 2015

Sep 14 2015

Sep 9 2015

Aug 11 2015

Jul 20 2015

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Jun 19 2015

Jun 10 2015

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Jun 2 2015

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Apr 30 2015

Apr 28 2015

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Apr 23 2015

Apr 22 2015

Apr 21 2015

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Apr 16 2015

Apr 15 2015

Apr 12 2015

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Apr 10 2015

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Apr 2 2015

Apr 1 2015

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Mar 27 2015

Mar 26 2015

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Mar 24 2015

Mar 17 2015

Mar 13 2015

Feb 28 2015

Feb 27 2015

Feb 25 2015

Feb 24 2015

Feb 23 2015

Feb 17 2015

Feb 16 2015

specmicp/src/specmicp
reactmicp/unsaturatedd274109c12fcdbdb38b00ed…