Diffusion tamaas (features/netcdf-mpi) History

History
features/netcdf-mpi1dc8d369d30ac66652e6c17…

Mar 2 2021

[site_scons] improved error message on missing FFTW component
1dc8d369d30a
·frerot on Mar 2 2021, 17:34.

Feb 17 2021

[Jenkins] deactivated MPI
6a7d4ffae178
·frerot on Feb 17 2021, 17:26.
[Jenkins] calling setup.py instead of pip
bbe89c53f398
·frerot on Feb 17 2021, 16:49.
[Jenkins] added user flag
5bf4b38644ad
·frerot on Feb 17 2021, 16:36.
installing tamaas before running tests on Jenkins
cac4e58769c5
·frerot on Feb 17 2021, 16:29.
updated submodules
29befdea798a
·frerot on Feb 17 2021, 04:28.

Feb 16 2021

missed some 2021 copyright years
2c28855671d3
·frerot on Feb 16 2021, 21:54.
printing some important build options
7c3d7a73b30c
·frerot on Feb 16 2021, 21:47.
using tmp_path fixture for dumper tests
1b416aafdfde
·frerot on Feb 16 2021, 21:22.

Feb 15 2021

added choice of fftw thread model in scons
9863efdd4c01
·frerot on Feb 15 2021, 16:24.
ignoring netcdf dumps in examples
4d191557195e
·frerot on Feb 15 2021, 16:23.

Jan 14 2021

setup netcdf dumper for parallel writes
46db5babbf1a
·frerot on Jan 14 2021, 23:41.

Jan 13 2021

[site_scons] handling "not in git repo" error + using HEAD instead of @
52d7a59667cb
·frerot on Jan 13 2021, 21:14.
fixed remnants of deprecated stuff in examples
e777fc6611a0
·frerot on Jan 13 2021, 21:11.

Jan 7 2021

stopped using leading and trailing __ in header guards
2b523bbf68a7
·frerot on Jan 7 2021, 02:54.
Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
unnecessary return type on lambda
d20839711fb3
·frerot on Jan 7 2021, 01:42.
removed all legacy code
8b01fcdb4d21
·frerot on Jan 7 2021, 01:32.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

[TESTS] setting OMP_NUM_THREADS=1 in scons test
5ea22488f452
·frerot on Jan 5 2021, 21:37.
[DOC] modified doc for revised python interface
bd65ceb3903f
·frerot on Jan 5 2021, 18:16.
added traction and displacement properties to model bindings
74509e1d1987
·frerot on Jan 5 2021, 18:13.
adding [] operator to Model class
7be77d61e712
·frerot on Jan 5 2021, 18:08.
modified dumpers for new interface
9054b97f8b37
·frerot on Jan 5 2021, 00:06.

Jan 4 2021

const correctness of fftengine
af6a620b3dce
·frerot on Jan 4 2021, 22:47.

Jan 1 2021

Dec 31 2020

added number of dumpers in model << output
8b57ac4133c5
·frerot on Dec 31 2020, 18:21.
updated tests for new interface
cbd238489088
·frerot on Dec 31 2020, 18:10.
bump version to 2.2.0
65506d9f82cf
·tag: v2.2.0
·frerot on Dec 31 2020, 16:33.
updated examples to use more pythonic interface
7a837ca5513a
·frerot on Dec 31 2020, 04:52.
added __call__ to IntegralOperator bindings
49155381f7a4
·frerot on Dec 31 2020, 04:51.
calling setSizes in SurfaceGenerator constructor
07bf72fea9cc
·frerot on Dec 31 2020, 04:51.
adding a constructor with global shape to surface generators
560001b7e019
·frerot on Dec 31 2020, 02:28.
more pythonic bindings of surface generators, solvers and flood fill
9d2cf7093171
·frerot on Dec 31 2020, 01:26.
added bounding box computation for clusters
dd69668f7622
·frerot on Dec 31 2020, 01:25.

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 15 2020

[TEST] added an mpi version of plasticity patch test
1597124d7ae9
·frerot on Dec 15 2020, 20:53.

Dec 14 2020

renamed USE_CUDA macro to TAMAAS_USE_CUDA
44fd0470bd21
·frerot on Dec 14 2020, 18:05.
[BUILD] incrementally checking for requested fftw components
5b9baa398081
·frerot on Dec 14 2020, 18:03.

Dec 11 2020

[DOC] added figure for data distribution
077b1feba4c2
·frerot on Dec 11 2020, 20:55.

Dec 10 2020

added documentation on MPI
92343fd27ef3
·frerot on Dec 10 2020, 22:04.
not writing gtest xml with mpirun
0670ef204b92
·frerot on Dec 10 2020, 17:11.
only warning once about mpi
460a2d811c4e
·frerot on Dec 10 2020, 03:46.
adapted plasticty example for mpi
d3adb8781f6e
·frerot on Dec 10 2020, 03:46.
properly setting size of underlying array in grid views
cbef215a579d
·frerot on Dec 10 2020, 03:24.
skipping headless test when not on root process
6497fb26e47c
·frerot on Dec 10 2020, 00:35.

Dec 9 2020

updated stress example to run with mpi
73a8b44d38ce
·frerot on Dec 9 2020, 23:20.
added newline for debug messages
c6cda5e747be
·frerot on Dec 9 2020, 22:57.
fixed a bug in the computation of grid strides
10c9ddd1e0e0
·frerot on Dec 9 2020, 22:56.
added back the old pkr mpi test
50989776262e
·frerot on Dec 9 2020, 17:17.

Dec 8 2020

correcting fundamental mode only on root rank
02240a9f1952
·frerot on Dec 8 2020, 22:20.
protecting mkdir in @directory_dump
695f2e0111b0
·frerot on Dec 8 2020, 22:18.
added readonly properties to python model bindings
74402ed7185c
·frerot on Dec 8 2020, 21:47.
adding method for global discretization in model
fe04638c6ab7
·frerot on Dec 8 2020, 21:46.
converting only dumped fields in hdf5toVTK
eed5bd5407de
·frerot on Dec 8 2020, 21:45.
not running mpi h5dumper test when hdf5 has no mpi support
12b7e837ead0
·frerot on Dec 8 2020, 19:45.
added helper function to convert hdf5 model dump to VTK
6f1bb5d3d5ce
·frerot on Dec 8 2020, 19:45.
uniform debug messages with TAMAAS_DEBUG_MSG macro
83b12befa682
·frerot on Dec 8 2020, 17:16.
raising exception if scipy solvers are used with MPI
f739905b88d2
·frerot on Dec 8 2020, 17:04.
use uvw.RectilinearGrid instead of parallel variant
09b1019f9242
·frerot on Dec 8 2020, 17:03.

Dec 7 2020

adding has_mpi to TamaasInfo class
09634dfd5d9d
·frerot on Dec 7 2020, 18:06.

Dec 5 2020

added tolerance on components tests
d9c3d9f292da
·frerot on Dec 5 2020, 00:14.

Dec 4 2020

raising when NumpyDumper is called in parallel
1af5c7f89584
·frerot on Dec 4 2020, 22:28.
prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.
added type traits to python interface
b4ec536528a2
·frerot on Dec 4 2020, 19:59.

Dec 2 2020

added convenience size/rank to mpi bindings
cce181f1da1f
·frerot on Dec 2 2020, 00:07.

Dec 1 2020

changed tm.to_voigt uses to tm.compute.to_voigt
90e419eb7a0a
·frerot on Dec 1 2020, 22:35.
moved mpi function bindings to their own submodule
f9fadc483c40
·frerot on Dec 1 2020, 21:44.
fixing fftwmpi tests
efd5776aa2c0
·frerot on Dec 1 2020, 21:23.
testing parallel pkr with hertz instead of sequential pkr
4022e3acd5e6
·frerot on Dec 1 2020, 21:23.
making an fftengine on the fly in stats functions
24b0fa8bbc51
·frerot on Dec 1 2020, 21:14.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 27 2020

added some debug log messages
e290de0838e8
·frerot on Nov 27 2020, 17:52.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.
adjusting mpi tests
14f13ab72ad0
·frerot on Nov 25 2020, 21:31.
added experimental mpi warning
f5786e6cbeff
·frerot on Nov 25 2020, 21:29.
added backwards fft 2d tests (counterpart of mpi test)
945eedca11ad
·frerot on Nov 25 2020, 21:28.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 3 2020

turn on flag TAMAAS_USE_PYTHON
eeeb65577eff
·frerot on Sep 3 2020, 23:28.
adjusting tolerance of test FFT1D2Comp
671a3a805986
·frerot on Sep 3 2020, 23:15.

Sep 1 2020

rename USE_MPI to TAMAAS_USE_MPI
a18819dd25e3
·frerot on Sep 1 2020, 23:26.
Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 31 2020

removed useless operator= for ToleranceManager
0f3eef3f390e
·frerot on Aug 31 2020, 21:15.
silenced warnings about deprecated copy ctors
5e6c40b035b2
·frerot on Aug 31 2020, 19:00.
linking with libpython${version} to test_gtest_all
5471cb70c676
·frerot on Aug 31 2020, 18:22.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 8 2020

[DOC] refreshed description of installtion with pip
19806151094f
·tag: v2.1.4
·frerot on Aug 8 2020, 01:23.
prefer this email
3838c1d4ac9d
·frerot on Aug 8 2020, 01:04.
changes to setup.py to build python 2 wheels
f59e8b7c2de2
·frerot on Aug 8 2020, 00:16.

Aug 7 2020

fixing errors for python 2
69c13358055d
·frerot on Aug 7 2020, 22:56.
making sure libTamaas is linked first
87df0438ac11
·frerot on Aug 7 2020, 20:21.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.
adding a backwards transform test
32f729beef69
·frerot on Aug 6 2020, 01:26.
allowing other fftw flags in mpi engine
80617eef9978
·frerot on Aug 6 2020, 01:24.
reducing float test tolerance to 4ε
9d631430e38f
·frerot on Aug 6 2020, 01:22.

Aug 5 2020

[DOC] added dependencies to generate doc for dumpers and solvers
fc7139c685e4
·frerot on Aug 5 2020, 21:03.
overwrite netcdf file on first dump
87299a2f0e72
·frerot on Aug 5 2020, 20:36.
creating variables with right dimensions in netcdf dumper
555b9d18b1d5
·frerot on Aug 5 2020, 20:27.

Aug 4 2020

netcdf dumper now writes frames to a single file
357aabe906d0
·frerot on Aug 4 2020, 23:02.
matching documentation version to tamaas' version number
af71e726e2e4
·frerot on Aug 4 2020, 20:10.

Historyfeatures/netcdf-mpi1dc8d369d30ac66652e6c17…

Mar 2 2021

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History
features/netcdf-mpi1dc8d369d30ac66652e6c17…