Diffusion tamaas (features/netcdf-mpi) History

History
features/netcdf-mpie17945d25c8847d87217e30…

Jul 28 2020

[DOC] adding Zenodo DOI badge
e88a7c32b543
·frerot on Jul 28 2020, 00:19.
adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.
compatibility with scons+py3
be792b1b623b
·frerot on Jul 28 2020, 00:06.

Jul 27 2020

[DOC] changed recursion option in clone command
a7ab3aa00176
·frerot on Jul 27 2020, 21:14.
[JOSS] added mobility grant acknowledgement
4a571e58e8cf
·frerot on Jul 27 2020, 18:22.
wrapping version number in python
90ef0739a009
·tag: v2.1.3
·frerot on Jul 27 2020, 18:03.
adding reference to JOSS in README
97069ca3612b
·frerot on Jul 27 2020, 17:52.
adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
prepending base directory in generated archive
94cbcda343ca
·frerot on Jul 27 2020, 17:24.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.
[JOSS] updated affilations
8abe9888a652
·frerot on Jul 27 2020, 17:12.
[DOC] added more details to quickstart page
3ad31bc2ad53
·frerot on Jul 27 2020, 17:12.

Jul 24 2020

modifiying python install scripts for a PyPI tamaas package
0f1bae08aea7
·tag: v2.1.2
·frerot on Jul 24 2020, 21:13.
log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Jul 22 2020

[DOC] clearer headings for contributing
1732bd341beb
·frerot on Jul 22 2020, 16:31.
relaxing threshold in patch plasticity test
ba57121986ad
·frerot on Jul 22 2020, 14:03.
not flattening arrays in netcdf dumper
af08c7abcf2c
·frerot on Jul 22 2020, 14:02.
allow pickles in numpy dumper test (default changed in 1.16.1)
10e89fb76a8c
·frerot on Jul 22 2020, 14:02.

Jul 21 2020

[DOC] added examples and performance pages
673fed723981
·frerot on Jul 21 2020, 20:42.
[Examples] added titles to figures
98cd1f0b041c
·frerot on Jul 21 2020, 20:36.
[DOC] moved quickstart to its own page
b92de062a308
·frerot on Jul 21 2020, 15:31.

Jul 17 2020

using global datasize/nbpoints functions when needed
e51c229537c2
·frerot on Jul 17 2020, 21:04.
testing PolonskyKeerRey in MPI
41cf38d51bcf
·frerot on Jul 17 2020, 19:24.

Jul 16 2020

addind test for mpi model creation
a7af53db8efa
·frerot on Jul 16 2020, 04:57.
allowing runs of several mpi routine tests
4921b6ec6a4c
·frerot on Jul 16 2020, 04:55.

Jul 15 2020

proper singleton for mpi::comm::world ensures working seq_guard
a9660ef02eed
·frerot on Jul 15 2020, 21:56.

Jul 14 2020

initializing model with local MPI sizes
9b70d3fba43f
·frerot on Jul 14 2020, 20:24.

Jul 12 2020

upgrading dockerfile and jenkinsfile for mpi tests
fa4fef35f40f
·frerot on Jul 12 2020, 17:32.
fixing sequential context manager
6f8537513eca
·frerot on Jul 12 2020, 17:24.
protected gtests that need to be run in sequential with guard
0e475acfc2fe
·frerot on Jul 12 2020, 14:13.
added mpi::sequential_guard
254daee554df
·frerot on Jul 12 2020, 14:12.
added mpi4py as dependency
0c9ddfa242f4
·frerot on Jul 12 2020, 03:59.
proper testing of mpi-enabled routines in python
cb2acaf61c4c
·frerot on Jul 12 2020, 03:59.
allowing 1D tests to pass
773514f8cf45
·frerot on Jul 12 2020, 02:59.
added a sequential context manager
ea6e316a0703
·frerot on Jul 12 2020, 01:30.
added some debug logs
b8ad8692d3ee
·frerot on Jul 12 2020, 01:30.
normalizing backward transforms in FFTWMPIEngine
6bd2aef6b143
·frerot on Jul 12 2020, 01:30.
removed explicit refs to MPI_COMM_WORLD
6819d831b8a4
·frerot on Jul 12 2020, 01:29.

Jul 11 2020

fixing concurrent random number generation
136efda36dc9
·frerot on Jul 11 2020, 23:02.
computeFrequencies now takes local sizes as argument
2696ba6deb02
·frerot on Jul 11 2020, 23:01.
fixing backwards mpi transforms
29100a290c77
·frerot on Jul 11 2020, 23:01.
running googletests with mpirun from pytest
fd5aedbcfb11
·frerot on Jul 11 2020, 20:33.
passing test for FFTMPI on multicomponents grid
621f49e8820d
·frerot on Jul 11 2020, 20:08.
implemented + tested mpi version of FFTEngine::computeFrequencies
0672d04558bb
·frerot on Jul 11 2020, 17:34.
updated googletest version to 1.10
2f2124e64da1
·frerot on Jul 11 2020, 17:32.
testing FFTWMPIEngine
77f5b675fc9d
·frerot on Jul 11 2020, 05:17.
mirroring logger behavior with MPI for python wrapper
1785d820392d
·frerot on Jul 11 2020, 00:28.

Jul 10 2020

Merge branch 'master' into feature/mpi_fft_engine
0defcff64961
·frerot on Jul 10 2020, 23:59.
redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
[JOSS] added citation to Pybind11
9046874a9be5
·frerot on Jul 10 2020, 21:19.
removing unecessary calls to initialize/finalize in examples
7d3736dfcf1f
·frerot on Jul 10 2020, 18:06.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.
correcting typos in rough surface doc
aec3fa0599a4
·frerot on Jul 10 2020, 17:40.
using Partitioner in FFTWMPIEngine
35c4836d6e63
·frerot on Jul 10 2020, 00:27.
added polymorphism to FFTEngines
0752a2fdb670
·frerot on Jul 10 2020, 00:06.

Jul 9 2020

have the same seed for surface gentor across mpi processes
6c2964a9d4d1
·frerot on Jul 9 2020, 20:35.
adding tests for partitioner
9775a947c07f
·frerot on Jul 9 2020, 20:34.
removing unecessary calls to initialize/finalize in examples
6a4012ba1c48
·frerot on Jul 9 2020, 19:40.
ignoring DeprecationWarning with pytest.ini config file
1dcf00b3cf42
·frerot on Jul 9 2020, 19:40.
removed stray tm.finalize's in tests
212e9544374c
·frerot on Jul 9 2020, 17:49.
split fftw mpi interface
ebfd54d08a16
·frerot on Jul 9 2020, 16:58.
passing communicator to mpi interface instead of assuming WORLD
4ced5dac6591
·frerot on Jul 9 2020, 16:30.

Jul 6 2020

tentative implementation of surface generation with mpi
5b293e6eba23
·frerot on Jul 6 2020, 04:17.

Jul 4 2020

added mpi reductions to loops
3f746e302ec4
·frerot on Jul 4 2020, 15:44.

Jul 3 2020

setting proper rpath for tests
f16ec5b85e49
·frerot on Jul 3 2020, 04:53.
added fftw libpath to rpath
c970723f194b
·frerot on Jul 3 2020, 01:45.
added lib64 directory to search for fftw
afb7a2500c3b
·frerot on Jul 3 2020, 01:38.
propertly setting rpaths with $ORIGIN
a4420cd7baa8
·frerot on Jul 3 2020, 01:34.

Jul 2 2020

forcing update with pip on scons install call
14b215073440
·frerot on Jul 2 2020, 21:19.
logging info on root proc
dfa9798ca373
·frerot on Jul 2 2020, 17:34.
added FFTMPIEngine
8facf8e0cda6
·frerot on Jul 2 2020, 16:59.

Jul 1 2020

added rank and reduce to mpi interface
8327d3f42110
·frerot on Jul 1 2020, 15:24.
no need for type traits to print enum labels
962ac4122e60
·frerot on Jul 1 2020, 15:14.
added reserve method to array and grid base
ddca5e722d54
·frerot on Jul 1 2020, 05:23.
allowing subclasses of FFTEngine
cb641f5bb816
·frerot on Jul 1 2020, 05:20.
safeguarding initialization functions
ddd01b4279a8
·frerot on Jul 1 2020, 05:20.

Jun 30 2020

[DOC] fix in example code
8fe083d0bc1b
·frerot on Jun 30 2020, 01:01.

Jun 28 2020

proper initializing of mpi and fftw with threads
1a1af8988bd3
·frerot on Jun 28 2020, 17:32.
added compilation options for MPI
4a8ef3167382
·frerot on Jun 28 2020, 15:10.
making fftengine internals more accessible for subclassing
37620cc9f8b9
·frerot on Jun 28 2020, 15:09.
ensuring initialize and finalized get called
04fa2ac30483
·frerot on Jun 28 2020, 03:09.

Jun 25 2020

getting rid of BOOST_PP_STRINGIZE
f1073dba0c14
·frerot on Jun 25 2020, 17:43.
added access to yield stress and hardening modulus in residual
7dbb2d1099f2
·frerot on Jun 25 2020, 16:42.
fixing CPPDEFINES
2581cf15be7f
·frerot on Jun 25 2020, 16:18.
removed FFTPlanManager and consorts
a66ead09e464
·frerot on Jun 25 2020, 03:06.
making sure CPPDEFINES is a list
4101c62ad2f1
·frerot on Jun 25 2020, 03:06.
making sure libTamaas from build is loaded when running tests
531937f6e06f
·frerot on Jun 25 2020, 02:43.
simplified alloc of in/out pointers in FFTEngine
aa1de33be858
·frerot on Jun 25 2020, 02:38.
making FFTEngine work with fftw flags >= FFTW_MEASURE
5b7d5e177fcd
·frerot on Jun 25 2020, 02:24.
removed remaining calls to FFTPlanManager
8f3b1410b161
·frerot on Jun 25 2020, 00:54.

Jun 24 2020

Merge branch 'master' into feature/fft_engine
3796abfaa1cd
·frerot on Jun 24 2020, 22:18.
added header report for pytest
22578f2b019d
·frerot on Jun 24 2020, 22:13.
reducing system size of test_epic
9919a84cfd1d
·frerot on Jun 24 2020, 19:18.
added short workflow description to contribution section
acb92043a41d
·D250
·frerot on Jun 24 2020, 18:00.
separated workflows for code reviews
4576418a9f6b
·D250
·frerot on Jun 24 2020, 17:52.
add reference to Archard_1957
53478e29a75b
·D249
·frerot on Jun 24 2020, 17:40.
Merge branch 'master' into arcpatch-D249
8c97f9be5457
·frerot on Jun 24 2020, 17:40.
add reference to Archard_1957
250c5d393fe5
·D249
·agshvarts / frerot on Jun 24 2020, 17:38.
added short workflow description to contribution section
9eff7d779bbd
·D250
·frerot on Jun 24 2020, 17:15.
added saturated pressure reference
4663aff62cc0
·frerot on Jun 24 2020, 16:54.

Historyfeatures/netcdf-mpie17945d25c8847d87217e30…

Jul 28 2020

Jul 27 2020

Jul 24 2020

Jul 22 2020

Jul 21 2020

Jul 17 2020

Jul 16 2020

Jul 15 2020

Jul 14 2020

Jul 12 2020

Jul 11 2020

Jul 10 2020

Jul 9 2020

Jul 6 2020

Jul 4 2020

Jul 3 2020

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Jul 1 2020

Jun 30 2020

Jun 28 2020

Jun 25 2020

Jun 24 2020

History
features/netcdf-mpie17945d25c8847d87217e30…