Diffusion tamaas (master) History

History
masterf59e8b7c2de27e3a9226596…

Aug 8 2020

changes to setup.py to build python 2 wheels
f59e8b7c2de2
·frerot on Aug 8 2020, 00:16.

Aug 7 2020

fixing errors for python 2
69c13358055d
·frerot on Aug 7 2020, 22:56.
making sure libTamaas is linked first
87df0438ac11
·frerot on Aug 7 2020, 20:21.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.

Aug 5 2020

[DOC] added dependencies to generate doc for dumpers and solvers
fc7139c685e4
·frerot on Aug 5 2020, 21:03.
overwrite netcdf file on first dump
87299a2f0e72
·frerot on Aug 5 2020, 20:36.
creating variables with right dimensions in netcdf dumper
555b9d18b1d5
·frerot on Aug 5 2020, 20:27.

Aug 4 2020

netcdf dumper now writes frames to a single file
357aabe906d0
·frerot on Aug 4 2020, 23:02.
matching documentation version to tamaas' version number
af71e726e2e4
·frerot on Aug 4 2020, 20:10.
laxer detection of Thrust headers
78c0e4b6a293
·frerot on Aug 4 2020, 17:33.

Aug 3 2020

[DOC] adding paragraph on integration methods
4281604d9e17
·frerot on Aug 3 2020, 22:26.
Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
testing all non-linear solvers in plasticity patch test
65b794bf9f7b
·frerot on Aug 3 2020, 21:27.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
added tolerance manager to plasticity example
498377ca55e4
·frerot on Aug 3 2020, 21:19.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.
avoid duplication of -fPIC flag
e1de40e29467
·frerot on Aug 3 2020, 16:09.
checking all variants of FFTW when requested
b4d19b07637b
·frerot on Aug 3 2020, 16:07.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Aug 1 2020

tentative implementation of DFSANESolver
cf36e15d08a3
·frerot on Aug 1 2020, 01:42.

Jul 31 2020

prettier compilation outputs in non-verbose mode
d38b418143c0
·frerot on Jul 31 2020, 22:17.

Jul 30 2020

[DOC] correct formatting of nested lists
83e7b905b82d
·frerot on Jul 30 2020, 18:57.
added shield(s.io) to c4science project page
5417ce428c72
·frerot on Jul 30 2020, 18:13.

Jul 29 2020

[DOC] added tamaas python package as requirement
b872df23a6a3
·frerot on Jul 29 2020, 18:40.
avoiding circular imports
8db558711c4c
·frerot on Jul 29 2020, 18:31.
renamed packaging_setup option to build_static_lib
cbe79569b127
·frerot on Jul 29 2020, 16:29.
packaging setup now generates static libTamaas
77e32d9a06e7
·frerot on Jul 29 2020, 03:21.

Jul 28 2020

[JOSS] added missing DOI for Archard (1957)
1730c72ac54f
·tag: joss_published_v1
·frerot on Jul 28 2020, 19:52.
[DOC] uniformizing titles and descriptions of Tamaas
4fe90e4e93ed
·frerot on Jul 28 2020, 16:16.
[DOC] adding various badges
5834c8d64134
·frerot on Jul 28 2020, 15:53.
[DOC] adding Zenodo DOI badge
e88a7c32b543
·frerot on Jul 28 2020, 00:19.
adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.
compatibility with scons+py3
be792b1b623b
·frerot on Jul 28 2020, 00:06.

Jul 27 2020

[DOC] changed recursion option in clone command
a7ab3aa00176
·frerot on Jul 27 2020, 21:14.
[JOSS] added mobility grant acknowledgement
4a571e58e8cf
·frerot on Jul 27 2020, 18:22.
wrapping version number in python
90ef0739a009
·tag: v2.1.3
·frerot on Jul 27 2020, 18:03.
adding reference to JOSS in README
97069ca3612b
·frerot on Jul 27 2020, 17:52.
adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
prepending base directory in generated archive
94cbcda343ca
·frerot on Jul 27 2020, 17:24.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.
[JOSS] updated affilations
8abe9888a652
·frerot on Jul 27 2020, 17:12.
[DOC] added more details to quickstart page
3ad31bc2ad53
·frerot on Jul 27 2020, 17:12.

Jul 24 2020

modifiying python install scripts for a PyPI tamaas package
0f1bae08aea7
·tag: v2.1.2
·frerot on Jul 24 2020, 21:13.
log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Jul 22 2020

[DOC] clearer headings for contributing
1732bd341beb
·frerot on Jul 22 2020, 16:31.
relaxing threshold in patch plasticity test
ba57121986ad
·frerot on Jul 22 2020, 14:03.
not flattening arrays in netcdf dumper
af08c7abcf2c
·frerot on Jul 22 2020, 14:02.
allow pickles in numpy dumper test (default changed in 1.16.1)
10e89fb76a8c
·frerot on Jul 22 2020, 14:02.

Jul 21 2020

[DOC] added examples and performance pages
673fed723981
·frerot on Jul 21 2020, 20:42.
[Examples] added titles to figures
98cd1f0b041c
·frerot on Jul 21 2020, 20:36.
[DOC] moved quickstart to its own page
b92de062a308
·frerot on Jul 21 2020, 15:31.

Jul 10 2020

redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
[JOSS] added citation to Pybind11
9046874a9be5
·frerot on Jul 10 2020, 21:19.
removing unecessary calls to initialize/finalize in examples
7d3736dfcf1f
·frerot on Jul 10 2020, 18:06.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.
correcting typos in rough surface doc
aec3fa0599a4
·frerot on Jul 10 2020, 17:40.

Jul 3 2020

setting proper rpath for tests
f16ec5b85e49
·frerot on Jul 3 2020, 04:53.
added fftw libpath to rpath
c970723f194b
·frerot on Jul 3 2020, 01:45.
added lib64 directory to search for fftw
afb7a2500c3b
·frerot on Jul 3 2020, 01:38.
propertly setting rpaths with $ORIGIN
a4420cd7baa8
·frerot on Jul 3 2020, 01:34.

Jul 2 2020

forcing update with pip on scons install call
14b215073440
·frerot on Jul 2 2020, 21:19.

Jun 30 2020

[DOC] fix in example code
8fe083d0bc1b
·frerot on Jun 30 2020, 01:01.

Jun 28 2020

ensuring initialize and finalized get called
04fa2ac30483
·frerot on Jun 28 2020, 03:09.

Jun 25 2020

getting rid of BOOST_PP_STRINGIZE
f1073dba0c14
·frerot on Jun 25 2020, 17:43.
added access to yield stress and hardening modulus in residual
7dbb2d1099f2
·frerot on Jun 25 2020, 16:42.
fixing CPPDEFINES
2581cf15be7f
·frerot on Jun 25 2020, 16:18.
removed FFTPlanManager and consorts
a66ead09e464
·frerot on Jun 25 2020, 03:06.
making sure CPPDEFINES is a list
4101c62ad2f1
·frerot on Jun 25 2020, 03:06.
making sure libTamaas from build is loaded when running tests
531937f6e06f
·frerot on Jun 25 2020, 02:43.
simplified alloc of in/out pointers in FFTEngine
aa1de33be858
·frerot on Jun 25 2020, 02:38.
making FFTEngine work with fftw flags >= FFTW_MEASURE
5b7d5e177fcd
·frerot on Jun 25 2020, 02:24.
removed remaining calls to FFTPlanManager
8f3b1410b161
·frerot on Jun 25 2020, 00:54.

Jun 24 2020

Merge branch 'master' into feature/fft_engine
3796abfaa1cd
·frerot on Jun 24 2020, 22:18.
added header report for pytest
22578f2b019d
·frerot on Jun 24 2020, 22:13.
reducing system size of test_epic
9919a84cfd1d
·frerot on Jun 24 2020, 19:18.
added short workflow description to contribution section
acb92043a41d
·D250
·frerot on Jun 24 2020, 18:00.
separated workflows for code reviews
4576418a9f6b
·D250
·frerot on Jun 24 2020, 17:52.
add reference to Archard_1957
53478e29a75b
·D249
·frerot on Jun 24 2020, 17:40.
Merge branch 'master' into arcpatch-D249
8c97f9be5457
·frerot on Jun 24 2020, 17:40.
add reference to Archard_1957
250c5d393fe5
·D249
·agshvarts / frerot on Jun 24 2020, 17:38.
added short workflow description to contribution section
9eff7d779bbd
·D250
·frerot on Jun 24 2020, 17:15.
added saturated pressure reference
4663aff62cc0
·frerot on Jun 24 2020, 16:54.
fixed heavy english syntax
c4c90c937206
·frerot on Jun 24 2020, 16:40.
added reference to condat + comment on how unique the code is
6257690b3ebb
·frerot on Jun 24 2020, 16:38.
added a "seeking help" section in doc
274414d905f3
·frerot on Jun 24 2020, 16:02.
cleaning doc before building it
326474e642c8
·frerot on Jun 24 2020, 15:57.
making sure sphinx can import the tamaas module for autodoc
9731ad93e058
·frerot on Jun 24 2020, 15:45.
removed legacy surface generator in test_autocorrelation
d5baa0511b25
·frerot on Jun 24 2020, 05:34.
compiling c++ tests needing pybind11 separately
7af541847c01
·frerot on Jun 24 2020, 05:30.
cleaning up the use of preprocessor macros
3cc1d8a160a7
·frerot on Jun 24 2020, 05:07.
removed unecessary LONG_PRECISION macro guard for fftw interface
548c812ae786
·frerot on Jun 24 2020, 04:28.
moved implementation of legacy surface statistics to separate cpp
75a2de973a73
·frerot on Jun 24 2020, 04:16.
using holder type for fftw plans in FFTEngine
d66116666bb9
·frerot on Jun 24 2020, 01:18.
fixing long double fftw interface
b4bacea3061c
·frerot on Jun 24 2020, 01:16.
converted statistics to FFTEngine
6bd8cd25056a
·frerot on Jun 24 2020, 00:18.

Jun 23 2020

converted surface generators to FFTEngine
a6e0bde62253
·frerot on Jun 23 2020, 23:52.
using FFTEngine in Westergaard integral operator
4e2d7b75fd90
·frerot on Jun 23 2020, 21:14.
adding computeFrequencies to FFTEngine
be7bc1258547
·frerot on Jun 23 2020, 21:13.

Jun 22 2020

added FFTEngine class
f8e1e9c7a919
·frerot on Jun 22 2020, 20:54.
ignoring deprecation warnings in test_dumper
7d5bdcdc47bb
·frerot on Jun 22 2020, 20:53.

Historymasterf59e8b7c2de27e3a9226596…

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History
masterf59e8b7c2de27e3a9226596…