Diffusion tamaas (petsc) History

History
petsc2127da253b2ff9cf9ab8564…

Jul 20 2022

fixing extent drift in flood fill
2127da253b2f
·frerot on Jul 20 2022, 16:21.
fixed flood fill to properly account for pbcs for bbox
d2ad39955cff
·frerot on Jul 20 2022, 15:49.
avoiding include dependency problems with allocator
55a4d19e43cf
·frerot on Jul 20 2022, 13:18.

Jul 19 2022

avoiding scons errors in wheels build
6eeb023f4752
·frerot on Jul 19 2022, 17:17.
using all-version citation for zenodo archive
3803465f500f
·frerot on Jul 19 2022, 10:27.
fixed cuda allocator
3d55c5b7b145
·frerot on Jul 19 2022, 10:09.

Jul 18 2022

fixed interface of unified allocator
f667c8a652ea
·frerot on Jul 18 2022, 19:04.
added tests for the matvec interface of Hooke and Kelvin
68aa539608a9
·frerot on Jul 18 2022, 17:19.
more flexible constructors for grids
22dee88b743f
·frerot on Jul 18 2022, 16:59.
added a simple span<T> class to help manage memory views
912f89c59336
·frerot on Jul 18 2022, 16:28.
adding pytest option --log-debug to show debug output in tests
9ae275d10ede
·frerot on Jul 18 2022, 14:20.

Jul 16 2022

generic wrap constructor for Grid
056a26ce85d5
·frerot on Jul 16 2022, 19:32.
tidying Array's interface to wrap
805d588092f1
·frerot on Jul 16 2022, 19:32.
bumping manylinux version
86647c14b6e7
·frerot on Jul 16 2022, 16:25.

Jul 15 2022

ModelFactory can set integration method for volume operators
e165b5e84fa6
·frerot on Jul 15 2022, 12:02.
matvec interface for Kelvin
13890bf97ef7
·frerot on Jul 15 2022, 12:00.
more flexible grid wrapping
1f26907f1a26
·frerot on Jul 15 2022, 11:59.
not assigning zero when resizing grid
aa45ec7d3996
·frerot on Jul 15 2022, 11:59.

Jul 8 2022

implemented LinearOperator interface for Hooke
dccfaf0b3ee4
·frerot on Jul 8 2022, 18:51.

Jul 5 2022

fixed trailing commas in setup.cfg.in
40549a775601
·tag: v2.5.0.post1
·frerot on Jul 5 2022, 12:48.
updated version in changelog
6649489188d5
·tag: v2.5.0
·frerot on Jul 5 2022, 11:27.

Jul 1 2022

formatting in CHANGELOG
c49383d6f694
·frerot on Jul 1 2022, 14:43.
added option to turn off directory dump in dumpers
3e30cf120309
·frerot on Jul 1 2022, 11:20.

Jun 30 2022

updated changelog
8eccc4352ae8
·frerot on Jun 30 2022, 11:39.
updated copyright for Sphinx documentation
3661df7e0ddf
·frerot on Jun 30 2022, 11:34.

Jun 29 2022

updated copyrights for Python files
a674186d994c
·frerot on Jun 29 2022, 14:49.
updated copyrights for C++ files
4b538827d5d4
·frerot on Jun 29 2022, 14:39.

Jun 28 2022

added tamaas.utils.radial_average
22ae9a858766
·frerot on Jun 28 2022, 09:55.

Jun 21 2022

bumped required python and scons versions
6de21c3d3743
·frerot on Jun 21 2022, 17:12.

Jun 20 2022

added a stat method to compute area of graph of function
a93ea8a43b13
·frerot on Jun 20 2022, 14:48.
added copyright, maintainer, license to config files
b4188719be68
·frerot on Jun 20 2022, 11:36.

Jun 3 2022

clang-tidy is a pia
9a1c04f110fb
·frerot on Jun 3 2022, 15:12.

Jun 2 2022

using VERBOSE from env to control verbosity make-like
0e343655dd45
·frerot on Jun 2 2022, 13:38.
removed readability checks from clang-tidy
9f0fc6dcf47f
·frerot on Jun 2 2022, 13:38.
added doc on custom solvers
04c4b708a638
·frerot on Jun 2 2022, 10:42.

Jun 1 2022

fixed circular include
c076a331e848
·frerot on Jun 1 2022, 11:31.
added compile db to default targets
b93169c6395f
·frerot on Jun 1 2022, 11:31.

May 31 2022

added custom solver example using scipy
e54c8b4b0e9b
·frerot on May 31 2022, 15:08.
allowing sub-classing of contact solver in python
236648d0522c
·frerot on May 31 2022, 15:06.
exposing elastic energy functionals in python
0d42fffa0509
·frerot on May 31 2022, 15:06.
fixed dependency of cost on discretization
490c191a4b02
·frerot on May 31 2022, 12:13.

May 30 2022

added API to IntegralOperator to convert into scipy's LinearOperator
0049a94bd5af
·frerot on May 30 2022, 13:38.

May 23 2022

updated CHANGELOG
a629e57f02ba
·frerot on May 23 2022, 15:52.
temporary fix for https://github.com/pypa/pip/issues/7953
2ffd909500cc
·frerot on May 23 2022, 14:33.
converted setup.py.in to setup.cfg.in
3c1f495bddb8
·frerot on May 23 2022, 13:50.

May 18 2022

updating emails in AUTHORS files
2fbc8bbff82f
·frerot on May 18 2022, 10:01.
quoting citations in README
0bc84502f1cd
·frerot on May 18 2022, 09:45.

May 16 2022

KatoSaturated: registering + changing sign of plastic correction
387b2079c8ec
·frerot on May 16 2022, 12:10.
setting default visibility to hidden for wheels
a95bae08f7a0
·frerot on May 16 2022, 10:49.

May 13 2022

increasing tolerance for newton-krylov solver
540f525efedc
·frerot on May 13 2022, 15:25.

May 12 2022

added dump of surface fields in VTK files
7b5ec4cc38d8
·frerot on May 12 2022, 15:29.
fixed decorator ordering
38eb11899a50
·frerot on May 12 2022, 13:32.

May 11 2022

added netcdf to paraview file conversion
a8986393d27a
·frerot on May 11 2022, 14:06.
added @classmethod for read functions in dumpers
24351fe95e2b
·frerot on May 11 2022, 14:02.

May 10 2022

updated changelog
6508dd2474cb
·frerot on May 10 2022, 09:14.

May 9 2022

flake8 formating
93fa1380f6bd
·frerot on May 9 2022, 12:49.

May 6 2022

correctly handling dump mpi compatibility
d19c6d819ecd
·frerot on May 6 2022, 17:32.
added test for publications
6c36659917ba
·frerot on May 6 2022, 10:39.
using local and global variables for publications
94fe16d9801f
·frerot on May 6 2022, 10:39.
added emojis to readme
3c46870d9e1a
·frerot on May 6 2022, 10:16.
refreshed README
0eb41bf3cc68
·frerot on May 6 2022, 09:32.

May 5 2022

handling test when nc-config is missing
b6681ec70d25
·frerot on May 5 2022, 14:44.
added tests for netcdf mpi IO
2eedc50cbe2c
·frerot on May 5 2022, 13:53.
fixed test error when uvw not installed
5a6df2de8725
·frerot on May 5 2022, 11:04.
correctly setting PYTHONPATH for scons test
f5cabe2f7b85
·frerot on May 5 2022, 11:04.

May 2 2022

ensuring consistent compiler flags in configure
c41c37254b85
·frerot on May 2 2022, 18:01.
added __all__ definition in utils.py
41d64abe7e11
·frerot on May 2 2022, 13:23.

Apr 27 2022

added CITATION.cff
18ccd214e887
·frerot on Apr 27 2022, 13:43.

Apr 25 2022

adding Tamaas information to dump files
1825edb7098a
·frerot on Apr 25 2022, 14:09.

Apr 22 2022

logging last iteration in contact solvers
1ff450e7eb80
·frerot on Apr 22 2022, 16:38.
added functional accessor for contact solvers
02dde1d5fb78
·frerot on Apr 22 2022, 16:37.

Apr 14 2022

[doc] added mentions of NetCDFDumper with MPI
aa6cca2b4d5f
·frerot on Apr 14 2022, 17:10.
NetCDFDumper can now dump in MPI
fdd25350ee5b
·frerot on Apr 14 2022, 15:23.
defining boundary field predicate in C++
808f4ef5312b
·frerot on Apr 14 2022, 15:18.

Apr 13 2022

building wheels for CPython 3.10
9f4af773627d
·frerot on Apr 13 2022, 16:59.
[doc] using python 3.9 in RTD
161c4a472b3a
·frerot on Apr 13 2022, 16:59.
[doc] added inkscape for better svg renders
065559880bba
·frerot on Apr 13 2022, 16:51.
[doc] not setting python.version for RTD
a554b1529b91
·frerot on Apr 13 2022, 16:43.
[doc] adjusting RTD config
9e7bd7be633a
·frerot on Apr 13 2022, 16:39.
[doc] specified tools.python for RTD
35573d1ad029
·frerot on Apr 13 2022, 16:37.
[doc] setting RTD image to ubuntu 20.04
155db27422cb
·frerot on Apr 13 2022, 16:15.
[doc] using system imagemagick in RTD
7b96a49f1c3e
·frerot on Apr 13 2022, 15:53.
[doc] added some documentation on how to use MPI
c3fd65b80bf5
·frerot on Apr 13 2022, 15:03.
better render of scaling plot in doc
9e8d3742735c
·frerot on Apr 13 2022, 13:55.
added python3-h5py-mpi to Docker image
6973f0ebe85c
·frerot on Apr 13 2022, 11:21.

Apr 7 2022

installing imagemagick in ReadTheDocs
4278fed63fde
·frerot on Apr 7 2022, 16:38.
Merge branch 'master' of gitlab.com:tamaas/tamaas
95e0fd5ce8a9
·frerot on Apr 7 2022, 10:17.
added python constructor for Model
f9607922e458
·frerot on Apr 7 2022, 10:03.

Apr 6 2022

defining return types for scatter and gather
d66fc61e74f0
·Lucas Frérot on Apr 6 2022, 22:54.
fixed return policy for scatter and gather bindings
68395442fa89
·frerot on Apr 6 2022, 18:35.
Merge branch 'features/distribute' into 'master'
c99a4cb9feb3
·Lucas Frérot on Apr 6 2022, 17:58.
added tamaas.mpi.scatter and tamaas.mpi.gather
f6c88495cce5
·frerot on Apr 6 2022, 17:22.

Apr 5 2022

added tamaas.utils.publications to print relevant publications
3901c186d1d1
·frerot on Apr 5 2022, 13:43.
fixing warnings in examples
9a13073aadb7
·frerot on Apr 5 2022, 13:31.

Mar 22 2022

removed stray print in zenodo.py
1ec57adb4a77
·frerot on Mar 22 2022, 11:06.
updated changelog with version 2.4.0
9a0b47c737c0
·tag: v2.4.0
·frerot on Mar 22 2022, 10:19.
[ci] using debian stable image for zenodo step
071fecd8cb41
·tag: v2.4.0rc1
·frerot on Mar 22 2022, 09:44.

Mar 21 2022

[ci] added stage to draft new zenodo release
3967641eb149
·tag: v2.3.2rc1
·frerot on Mar 21 2022, 16:44.
deleting old files in zenodo draft
3ac1070eb4fc
·frerot on Mar 21 2022, 16:12.
added zenodo script to create new zenodo releases
0d26241b3a23
·frerot on Mar 21 2022, 16:02.

Historypetsc2127da253b2ff9cf9ab8564…

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History
petsc2127da253b2ff9cf9ab8564…