Diffusion tamaas (petsc) History

History
petscb4d5adb73bc87743459328f…

Apr 6 2021

writing surface info in text header instead of numpy file
b4d5adb73bc8
·frerot on Apr 6 2021, 20:32.
added dump option to `surface` command
67d6e4dc8646
·frerot on Apr 6 2021, 18:12.

Apr 5 2021

[doc] formatting in changelog
f13f8cf7202b
·frerot on Apr 5 2021, 20:36.
silencing warning about missing uvw package
9c33983aed18
·frerot on Apr 5 2021, 17:17.

Apr 2 2021

bumping version number to 2.2.2
128ac546c267
·tag: v2.2.2
·frerot on Apr 2 2021, 21:57.
[doc] changing man section number to 7
b19adf7440cd
·frerot on Apr 2 2021, 21:53.
[doc] formatting
17b6d5bd4eb1
·frerot on Apr 2 2021, 19:49.
[doc] describing entry point `tamaas` command
9578f56e3c51
·frerot on Apr 2 2021, 17:34.
added an entry point `tamaas` with three sub-commands
6a713f330f44
·frerot on Apr 2 2021, 17:19.

Mar 20 2021

[doc] silencing warnings when generating documentation
6c56b69be4a2
·frerot on Mar 20 2021, 00:57.
[doc] allowing selection of sphinx doc builders
e6092ae873a1
·frerot on Mar 20 2021, 00:38.
[doc] converting svg for latex sphinx
e28a7d62ce74
·frerot on Mar 20 2021, 00:37.

Mar 17 2021

using env.subst instead of format
998dbf9a8e3a
·frerot on Mar 17 2021, 22:31.
separating TAMAAS_BACKEND to reflect the build parameters
b2f9e4544b61
·frerot on Mar 17 2021, 22:23.

Mar 16 2021

[doc] using nbviewer links for tutorials
57a0b603d12e
·frerot on Mar 16 2021, 17:04.

Mar 15 2021

[doc] added links to tutorials on homepage and README
19e35b33836d
·frerot on Mar 15 2021, 20:49.
using SCons File and Dir instead of os.path functions
8ea64976e79c
·frerot on Mar 15 2021, 01:19.

Mar 14 2021

prettyfying doxygen and sphinx command strings
6c31459a5ce5
·frerot on Mar 14 2021, 05:45.
added a compile_commands.json target with scons 4+
8718664a8961
·frerot on Mar 14 2021, 05:16.
avoid using main_env in SConscripts
70977949d1a6
·frerot on Mar 14 2021, 04:34.
added edit-mode indication to doc/SConscript
ac4cb3de4e0d
·frerot on Mar 14 2021, 02:52.
[doc] removed obsolete Makefile and version.pl
4fb6e0ff9b10
·frerot on Mar 14 2021, 00:19.
Merge branch 'enhancement/doc-scons'
e81646b8cb6f
·frerot on Mar 14 2021, 00:14.
[doc] generating man pages with the documentation
2f804a0f980e
·frerot on Mar 14 2021, 00:13.
[doc] different sphinx builds based on target type
1852a77c4e01
·frerot on Mar 14 2021, 00:12.

Mar 13 2021

[doc] installing sphinx doc in ${prefix}/share/doc/tamaas
d5937df5a153
·frerot on Mar 13 2021, 23:47.
[doc] adding dependency of Doxygen to source files instead of lib
6750faf9f9ba
·frerot on Mar 13 2021, 23:47.
using a python module to define project infos
648e32690df0
·frerot on Mar 13 2021, 23:20.
[doc] clarified conf variables for Doxyfile
4352ff47524d
·frerot on Mar 13 2021, 22:00.
added binder badge to setup.py for PyPI
93218b972dd2
·frerot on Mar 13 2021, 19:56.
[DOC] added link to rough surfaces tutorial
fa9a4b106ce2
·frerot on Mar 13 2021, 05:25.
[DOC] added normalize in ACF filter
343934da4495
·frerot on Mar 13 2021, 05:25.
[DOC] adding references to tutorial notebook
d0366b09c61d
·frerot on Mar 13 2021, 01:12.
not importing uvw.parallel in UVWDumper
db2125bf48ed
·frerot on Mar 13 2021, 01:11.

Mar 12 2021

announcing removal of python 2
4201535ed684
·frerot on Mar 12 2021, 21:04.
added references to the CHANGELOG in documentation
f4a28900a4b4
·frerot on Mar 12 2021, 17:46.

Mar 11 2021

modifiying scons files to build documentation
ca4efcdb8137
·frerot on Mar 11 2021, 21:11.

Mar 9 2021

[doc] changed organization to have proper headings with PDF export
9fb58159f76b
·frerot on Mar 9 2021, 20:28.

Mar 8 2021

using absolute path for env variables with `scons test`
659ebdd10165
·frerot on Mar 8 2021, 17:47.
removing useless symmetrize function in residual
754d1b054d56
·frerot on Mar 8 2021, 17:46.

Mar 4 2021

Fixing formatting of CHANGELOG for Phabricator
a86403a40a4c
·frerot on Mar 4 2021, 23:41.
[ci] adjusting pythonpath for gitlab
7042e2deb2e9
·frerot on Mar 4 2021, 22:27.
[ci] modifying variable substitution
d4bd896bf490
·frerot on Mar 4 2021, 21:11.
[ci] using abssolute path in PYTHONPATH for gitlab
1c24294792a0
·frerot on Mar 4 2021, 16:43.
[ci] using absolute path in PYTHONPATH for Jenkins
e493f4f740f1
·frerot on Mar 4 2021, 16:31.
added a CHANGELOG
a8eb73eedf0c
·frerot on Mar 4 2021, 00:58.

Mar 3 2021

[ci] added gitlab ci file
0c1bc986d3bc
·frerot on Mar 3 2021, 23:02.
[tests] not running mpi googletest if not compiled with mpi
881abfa51439
·frerot on Mar 3 2021, 21:42.

Mar 2 2021

performing basic configure checks
998c3fbb422f
·frerot on Mar 2 2021, 20:39.
adding custom CXXFLAGS to LINKFLAGS
fc8c55c14612
·frerot on Mar 2 2021, 20:22.
added documentation on build options and parallelism backends
5fab848001d9
·tag: v2.2.1
·frerot on Mar 2 2021, 17:40.
[site_scons] improved error message on missing FFTW component
1dc8d369d30a
·frerot on Mar 2 2021, 17:34.

Feb 17 2021

[Jenkins] deactivated MPI
6a7d4ffae178
·frerot on Feb 17 2021, 17:26.
[Jenkins] calling setup.py instead of pip
bbe89c53f398
·frerot on Feb 17 2021, 16:49.
[Jenkins] added user flag
5bf4b38644ad
·frerot on Feb 17 2021, 16:36.
installing tamaas before running tests on Jenkins
cac4e58769c5
·frerot on Feb 17 2021, 16:29.
updated submodules
29befdea798a
·frerot on Feb 17 2021, 04:28.

Feb 16 2021

missed some 2021 copyright years
2c28855671d3
·frerot on Feb 16 2021, 21:54.
printing some important build options
7c3d7a73b30c
·frerot on Feb 16 2021, 21:47.
using tmp_path fixture for dumper tests
1b416aafdfde
·frerot on Feb 16 2021, 21:22.

Feb 15 2021

added choice of fftw thread model in scons
9863efdd4c01
·frerot on Feb 15 2021, 16:24.
ignoring netcdf dumps in examples
4d191557195e
·frerot on Feb 15 2021, 16:23.

Jan 14 2021

setup netcdf dumper for parallel writes
46db5babbf1a
·frerot on Jan 14 2021, 23:41.

Jan 13 2021

[site_scons] handling "not in git repo" error + using HEAD instead of @
52d7a59667cb
·frerot on Jan 13 2021, 21:14.
fixed remnants of deprecated stuff in examples
e777fc6611a0
·frerot on Jan 13 2021, 21:11.

Jan 7 2021

stopped using leading and trailing __ in header guards
2b523bbf68a7
·frerot on Jan 7 2021, 02:54.
Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
unnecessary return type on lambda
d20839711fb3
·frerot on Jan 7 2021, 01:42.
removed all legacy code
8b01fcdb4d21
·frerot on Jan 7 2021, 01:32.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

[TESTS] setting OMP_NUM_THREADS=1 in scons test
5ea22488f452
·frerot on Jan 5 2021, 21:37.
[DOC] modified doc for revised python interface
bd65ceb3903f
·frerot on Jan 5 2021, 18:16.
added traction and displacement properties to model bindings
74509e1d1987
·frerot on Jan 5 2021, 18:13.
adding [] operator to Model class
7be77d61e712
·frerot on Jan 5 2021, 18:08.
modified dumpers for new interface
9054b97f8b37
·frerot on Jan 5 2021, 00:06.

Jan 4 2021

const correctness of fftengine
af6a620b3dce
·frerot on Jan 4 2021, 22:47.

Jan 1 2021

Dec 31 2020

added number of dumpers in model << output
8b57ac4133c5
·frerot on Dec 31 2020, 18:21.
updated tests for new interface
cbd238489088
·frerot on Dec 31 2020, 18:10.
bump version to 2.2.0
65506d9f82cf
·tag: v2.2.0
·frerot on Dec 31 2020, 16:33.
updated examples to use more pythonic interface
7a837ca5513a
·frerot on Dec 31 2020, 04:52.
added __call__ to IntegralOperator bindings
49155381f7a4
·frerot on Dec 31 2020, 04:51.
calling setSizes in SurfaceGenerator constructor
07bf72fea9cc
·frerot on Dec 31 2020, 04:51.
adding a constructor with global shape to surface generators
560001b7e019
·frerot on Dec 31 2020, 02:28.
more pythonic bindings of surface generators, solvers and flood fill
9d2cf7093171
·frerot on Dec 31 2020, 01:26.
added bounding box computation for clusters
dd69668f7622
·frerot on Dec 31 2020, 01:25.

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 15 2020

[TEST] added an mpi version of plasticity patch test
1597124d7ae9
·frerot on Dec 15 2020, 20:53.

Dec 14 2020

renamed USE_CUDA macro to TAMAAS_USE_CUDA
44fd0470bd21
·frerot on Dec 14 2020, 18:05.
[BUILD] incrementally checking for requested fftw components
5b9baa398081
·frerot on Dec 14 2020, 18:03.

Dec 11 2020

[DOC] added figure for data distribution
077b1feba4c2
·frerot on Dec 11 2020, 20:55.

Dec 10 2020

added documentation on MPI
92343fd27ef3
·frerot on Dec 10 2020, 22:04.
not writing gtest xml with mpirun
0670ef204b92
·frerot on Dec 10 2020, 17:11.
only warning once about mpi
460a2d811c4e
·frerot on Dec 10 2020, 03:46.
adapted plasticty example for mpi
d3adb8781f6e
·frerot on Dec 10 2020, 03:46.
properly setting size of underlying array in grid views
cbef215a579d
·frerot on Dec 10 2020, 03:24.
skipping headless test when not on root process
6497fb26e47c
·frerot on Dec 10 2020, 00:35.

Dec 9 2020

updated stress example to run with mpi
73a8b44d38ce
·frerot on Dec 9 2020, 23:20.
added newline for debug messages
c6cda5e747be
·frerot on Dec 9 2020, 22:57.
fixed a bug in the computation of grid strides
10c9ddd1e0e0
·frerot on Dec 9 2020, 22:56.

Historypetscb4d5adb73bc87743459328f…

Apr 6 2021

Apr 5 2021

Apr 2 2021

Mar 20 2021

Mar 17 2021

Mar 16 2021

Mar 15 2021

Mar 14 2021

Mar 13 2021

Mar 12 2021

Mar 11 2021

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Mar 2 2021

Feb 17 2021

Feb 16 2021

Feb 15 2021

Jan 14 2021

Jan 13 2021

Jan 7 2021

Jan 5 2021

Jan 4 2021

Jan 1 2021

Dec 31 2020

Dec 30 2020

Dec 15 2020

Dec 14 2020

Dec 11 2020

Dec 10 2020

Dec 9 2020

History
petscb4d5adb73bc87743459328f…