Diffusion tamaas (petsc) History

History
petsccfbbd07ff0cf40f6ba6eb04…

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 15 2020

[TEST] added an mpi version of plasticity patch test
1597124d7ae9
·frerot on Dec 15 2020, 20:53.

Dec 14 2020

renamed USE_CUDA macro to TAMAAS_USE_CUDA
44fd0470bd21
·frerot on Dec 14 2020, 18:05.
[BUILD] incrementally checking for requested fftw components
5b9baa398081
·frerot on Dec 14 2020, 18:03.

Dec 11 2020

[DOC] added figure for data distribution
077b1feba4c2
·frerot on Dec 11 2020, 20:55.

Dec 10 2020

added documentation on MPI
92343fd27ef3
·frerot on Dec 10 2020, 22:04.
not writing gtest xml with mpirun
0670ef204b92
·frerot on Dec 10 2020, 17:11.
only warning once about mpi
460a2d811c4e
·frerot on Dec 10 2020, 03:46.
adapted plasticty example for mpi
d3adb8781f6e
·frerot on Dec 10 2020, 03:46.
properly setting size of underlying array in grid views
cbef215a579d
·frerot on Dec 10 2020, 03:24.
skipping headless test when not on root process
6497fb26e47c
·frerot on Dec 10 2020, 00:35.

Dec 9 2020

updated stress example to run with mpi
73a8b44d38ce
·frerot on Dec 9 2020, 23:20.
added newline for debug messages
c6cda5e747be
·frerot on Dec 9 2020, 22:57.
fixed a bug in the computation of grid strides
10c9ddd1e0e0
·frerot on Dec 9 2020, 22:56.
added back the old pkr mpi test
50989776262e
·frerot on Dec 9 2020, 17:17.

Dec 8 2020

correcting fundamental mode only on root rank
02240a9f1952
·frerot on Dec 8 2020, 22:20.
protecting mkdir in @directory_dump
695f2e0111b0
·frerot on Dec 8 2020, 22:18.
added readonly properties to python model bindings
74402ed7185c
·frerot on Dec 8 2020, 21:47.
adding method for global discretization in model
fe04638c6ab7
·frerot on Dec 8 2020, 21:46.
converting only dumped fields in hdf5toVTK
eed5bd5407de
·frerot on Dec 8 2020, 21:45.
not running mpi h5dumper test when hdf5 has no mpi support
12b7e837ead0
·frerot on Dec 8 2020, 19:45.
added helper function to convert hdf5 model dump to VTK
6f1bb5d3d5ce
·frerot on Dec 8 2020, 19:45.
uniform debug messages with TAMAAS_DEBUG_MSG macro
83b12befa682
·frerot on Dec 8 2020, 17:16.
raising exception if scipy solvers are used with MPI
f739905b88d2
·frerot on Dec 8 2020, 17:04.
use uvw.RectilinearGrid instead of parallel variant
09b1019f9242
·frerot on Dec 8 2020, 17:03.

Dec 7 2020

adding has_mpi to TamaasInfo class
09634dfd5d9d
·frerot on Dec 7 2020, 18:06.

Dec 5 2020

added tolerance on components tests
d9c3d9f292da
·frerot on Dec 5 2020, 00:14.

Dec 4 2020

raising when NumpyDumper is called in parallel
1af5c7f89584
·frerot on Dec 4 2020, 22:28.
prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.
added type traits to python interface
b4ec536528a2
·frerot on Dec 4 2020, 19:59.

Dec 2 2020

added convenience size/rank to mpi bindings
cce181f1da1f
·frerot on Dec 2 2020, 00:07.

Dec 1 2020

changed tm.to_voigt uses to tm.compute.to_voigt
90e419eb7a0a
·frerot on Dec 1 2020, 22:35.
moved mpi function bindings to their own submodule
f9fadc483c40
·frerot on Dec 1 2020, 21:44.
fixing fftwmpi tests
efd5776aa2c0
·frerot on Dec 1 2020, 21:23.
testing parallel pkr with hertz instead of sequential pkr
4022e3acd5e6
·frerot on Dec 1 2020, 21:23.
making an fftengine on the fly in stats functions
24b0fa8bbc51
·frerot on Dec 1 2020, 21:14.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 27 2020

added some debug log messages
e290de0838e8
·frerot on Nov 27 2020, 17:52.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.
adjusting mpi tests
14f13ab72ad0
·frerot on Nov 25 2020, 21:31.
added experimental mpi warning
f5786e6cbeff
·frerot on Nov 25 2020, 21:29.
added backwards fft 2d tests (counterpart of mpi test)
945eedca11ad
·frerot on Nov 25 2020, 21:28.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 3 2020

turn on flag TAMAAS_USE_PYTHON
eeeb65577eff
·frerot on Sep 3 2020, 23:28.
adjusting tolerance of test FFT1D2Comp
671a3a805986
·frerot on Sep 3 2020, 23:15.

Sep 1 2020

rename USE_MPI to TAMAAS_USE_MPI
a18819dd25e3
·frerot on Sep 1 2020, 23:26.
Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 31 2020

removed useless operator= for ToleranceManager
0f3eef3f390e
·frerot on Aug 31 2020, 21:15.
silenced warnings about deprecated copy ctors
5e6c40b035b2
·frerot on Aug 31 2020, 19:00.
linking with libpython${version} to test_gtest_all
5471cb70c676
·frerot on Aug 31 2020, 18:22.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 8 2020

[DOC] refreshed description of installtion with pip
19806151094f
·tag: v2.1.4
·frerot on Aug 8 2020, 01:23.
prefer this email
3838c1d4ac9d
·frerot on Aug 8 2020, 01:04.
changes to setup.py to build python 2 wheels
f59e8b7c2de2
·frerot on Aug 8 2020, 00:16.

Aug 7 2020

fixing errors for python 2
69c13358055d
·frerot on Aug 7 2020, 22:56.
making sure libTamaas is linked first
87df0438ac11
·frerot on Aug 7 2020, 20:21.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.
adding a backwards transform test
32f729beef69
·frerot on Aug 6 2020, 01:26.
allowing other fftw flags in mpi engine
80617eef9978
·frerot on Aug 6 2020, 01:24.
reducing float test tolerance to 4ε
9d631430e38f
·frerot on Aug 6 2020, 01:22.

Aug 5 2020

[DOC] added dependencies to generate doc for dumpers and solvers
fc7139c685e4
·frerot on Aug 5 2020, 21:03.
overwrite netcdf file on first dump
87299a2f0e72
·frerot on Aug 5 2020, 20:36.
creating variables with right dimensions in netcdf dumper
555b9d18b1d5
·frerot on Aug 5 2020, 20:27.

Aug 4 2020

netcdf dumper now writes frames to a single file
357aabe906d0
·frerot on Aug 4 2020, 23:02.
matching documentation version to tamaas' version number
af71e726e2e4
·frerot on Aug 4 2020, 20:10.
laxer detection of Thrust headers
78c0e4b6a293
·frerot on Aug 4 2020, 17:33.

Aug 3 2020

[DOC] adding paragraph on integration methods
4281604d9e17
·frerot on Aug 3 2020, 22:26.
Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
testing all non-linear solvers in plasticity patch test
65b794bf9f7b
·frerot on Aug 3 2020, 21:27.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
added tolerance manager to plasticity example
498377ca55e4
·frerot on Aug 3 2020, 21:19.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.
avoid duplication of -fPIC flag
e1de40e29467
·frerot on Aug 3 2020, 16:09.
checking all variants of FFTW when requested
b4d19b07637b
·frerot on Aug 3 2020, 16:07.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Aug 1 2020

tentative implementation of DFSANESolver
cf36e15d08a3
·frerot on Aug 1 2020, 01:42.

Jul 31 2020

prettier compilation outputs in non-verbose mode
d38b418143c0
·frerot on Jul 31 2020, 22:17.

Jul 30 2020

[DOC] correct formatting of nested lists
83e7b905b82d
·frerot on Jul 30 2020, 18:57.
added shield(s.io) to c4science project page
5417ce428c72
·frerot on Jul 30 2020, 18:13.

Jul 29 2020

[DOC] added tamaas python package as requirement
b872df23a6a3
·frerot on Jul 29 2020, 18:40.
avoiding circular imports
8db558711c4c
·frerot on Jul 29 2020, 18:31.
renamed packaging_setup option to build_static_lib
cbe79569b127
·frerot on Jul 29 2020, 16:29.
packaging setup now generates static libTamaas
77e32d9a06e7
·frerot on Jul 29 2020, 03:21.

Jul 28 2020

[JOSS] added missing DOI for Archard (1957)
1730c72ac54f
·tag: joss_published_v1
·frerot on Jul 28 2020, 19:52.
[DOC] uniformizing titles and descriptions of Tamaas
4fe90e4e93ed
·frerot on Jul 28 2020, 16:16.
[DOC] adding various badges
5834c8d64134
·frerot on Jul 28 2020, 15:53.
[DOC] adding Zenodo DOI badge
e88a7c32b543
·frerot on Jul 28 2020, 00:19.
adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.
compatibility with scons+py3
be792b1b623b
·frerot on Jul 28 2020, 00:06.

Jul 27 2020

[DOC] changed recursion option in clone command
a7ab3aa00176
·frerot on Jul 27 2020, 21:14.
[JOSS] added mobility grant acknowledgement
4a571e58e8cf
·frerot on Jul 27 2020, 18:22.
wrapping version number in python
90ef0739a009
·tag: v2.1.3
·frerot on Jul 27 2020, 18:03.
adding reference to JOSS in README
97069ca3612b
·frerot on Jul 27 2020, 17:52.
adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
prepending base directory in generated archive
94cbcda343ca
·frerot on Jul 27 2020, 17:24.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.
[JOSS] updated affilations
8abe9888a652
·frerot on Jul 27 2020, 17:12.
[DOC] added more details to quickstart page
3ad31bc2ad53
·frerot on Jul 27 2020, 17:12.

Jul 24 2020

modifiying python install scripts for a PyPI tamaas package
0f1bae08aea7
·tag: v2.1.2
·frerot on Jul 24 2020, 21:13.
log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Historypetsccfbbd07ff0cf40f6ba6eb04…

Dec 30 2020

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Jul 24 2020

History
petsccfbbd07ff0cf40f6ba6eb04…