Diffusion tamaas (petsc) History

tamaas/src
petscfc8c55c146125067dc9b0ad…

Feb 16 2021

missed some 2021 copyright years
2c28855671d3
·frerot on Feb 16 2021, 21:54.

Jan 7 2021

stopped using leading and trailing __ in header guards
2b523bbf68a7
·frerot on Jan 7 2021, 02:54.
Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
removed all legacy code
8b01fcdb4d21
·frerot on Jan 7 2021, 01:32.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

adding [] operator to Model class
7be77d61e712
·frerot on Jan 5 2021, 18:08.

Jan 4 2021

const correctness of fftengine
af6a620b3dce
·frerot on Jan 4 2021, 22:47.

Jan 1 2021

Dec 31 2020

added number of dumpers in model << output
8b57ac4133c5
·frerot on Dec 31 2020, 18:21.
calling setSizes in SurfaceGenerator constructor
07bf72fea9cc
·frerot on Dec 31 2020, 04:51.
adding a constructor with global shape to surface generators
560001b7e019
·frerot on Dec 31 2020, 02:28.
more pythonic bindings of surface generators, solvers and flood fill
9d2cf7093171
·frerot on Dec 31 2020, 01:26.
added bounding box computation for clusters
dd69668f7622
·frerot on Dec 31 2020, 01:25.

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 14 2020

renamed USE_CUDA macro to TAMAAS_USE_CUDA
44fd0470bd21
·frerot on Dec 14 2020, 18:05.

Dec 10 2020

only warning once about mpi
460a2d811c4e
·frerot on Dec 10 2020, 03:46.
properly setting size of underlying array in grid views
cbef215a579d
·frerot on Dec 10 2020, 03:24.

Dec 9 2020

added newline for debug messages
c6cda5e747be
·frerot on Dec 9 2020, 22:57.
fixed a bug in the computation of grid strides
10c9ddd1e0e0
·frerot on Dec 9 2020, 22:56.

Dec 8 2020

correcting fundamental mode only on root rank
02240a9f1952
·frerot on Dec 8 2020, 22:20.
adding method for global discretization in model
fe04638c6ab7
·frerot on Dec 8 2020, 21:46.
uniform debug messages with TAMAAS_DEBUG_MSG macro
83b12befa682
·frerot on Dec 8 2020, 17:16.

Dec 7 2020

adding has_mpi to TamaasInfo class
09634dfd5d9d
·frerot on Dec 7 2020, 18:06.

Dec 4 2020

prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.

Dec 1 2020

making an fftengine on the fly in stats functions
24b0fa8bbc51
·frerot on Dec 1 2020, 21:14.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 27 2020

added some debug log messages
e290de0838e8
·frerot on Nov 27 2020, 17:52.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.
added experimental mpi warning
f5786e6cbeff
·frerot on Nov 25 2020, 21:29.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 1 2020

rename USE_MPI to TAMAAS_USE_MPI
a18819dd25e3
·frerot on Sep 1 2020, 23:26.
Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 31 2020

removed useless operator= for ToleranceManager
0f3eef3f390e
·frerot on Aug 31 2020, 21:15.
silenced warnings about deprecated copy ctors
5e6c40b035b2
·frerot on Aug 31 2020, 19:00.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 8 2020

prefer this email
3838c1d4ac9d
·frerot on Aug 8 2020, 01:04.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.
allowing other fftw flags in mpi engine
80617eef9978
·frerot on Aug 6 2020, 01:24.
reducing float test tolerance to 4ε
9d631430e38f
·frerot on Aug 6 2020, 01:22.

Aug 3 2020

[DOC] adding paragraph on integration methods
4281604d9e17
·frerot on Aug 3 2020, 22:26.
Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.
avoid duplication of -fPIC flag
e1de40e29467
·frerot on Aug 3 2020, 16:09.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Aug 1 2020

tentative implementation of DFSANESolver
cf36e15d08a3
·frerot on Aug 1 2020, 01:42.

Jul 29 2020

renamed packaging_setup option to build_static_lib
cbe79569b127
·frerot on Jul 29 2020, 16:29.
packaging setup now generates static libTamaas
77e32d9a06e7
·frerot on Jul 29 2020, 03:21.

Jul 28 2020

adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.

Jul 27 2020

adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.

Jul 24 2020

log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Jul 17 2020

using global datasize/nbpoints functions when needed
e51c229537c2
·frerot on Jul 17 2020, 21:04.

Jul 15 2020

proper singleton for mpi::comm::world ensures working seq_guard
a9660ef02eed
·frerot on Jul 15 2020, 21:56.

Jul 14 2020

initializing model with local MPI sizes
9b70d3fba43f
·frerot on Jul 14 2020, 20:24.

Jul 12 2020

added mpi::sequential_guard
254daee554df
·frerot on Jul 12 2020, 14:12.
allowing 1D tests to pass
773514f8cf45
·frerot on Jul 12 2020, 02:59.
added a sequential context manager
ea6e316a0703
·frerot on Jul 12 2020, 01:30.
added some debug logs
b8ad8692d3ee
·frerot on Jul 12 2020, 01:30.
normalizing backward transforms in FFTWMPIEngine
6bd2aef6b143
·frerot on Jul 12 2020, 01:30.
removed explicit refs to MPI_COMM_WORLD
6819d831b8a4
·frerot on Jul 12 2020, 01:29.

Jul 11 2020

fixing concurrent random number generation
136efda36dc9
·frerot on Jul 11 2020, 23:02.
computeFrequencies now takes local sizes as argument
2696ba6deb02
·frerot on Jul 11 2020, 23:01.
fixing backwards mpi transforms
29100a290c77
·frerot on Jul 11 2020, 23:01.
passing test for FFTMPI on multicomponents grid
621f49e8820d
·frerot on Jul 11 2020, 20:08.
implemented + tested mpi version of FFTEngine::computeFrequencies
0672d04558bb
·frerot on Jul 11 2020, 17:34.
testing FFTWMPIEngine
77f5b675fc9d
·frerot on Jul 11 2020, 05:17.

Jul 10 2020

Merge branch 'master' into feature/mpi_fft_engine
0defcff64961
·frerot on Jul 10 2020, 23:59.
redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.
using Partitioner in FFTWMPIEngine
35c4836d6e63
·frerot on Jul 10 2020, 00:27.
added polymorphism to FFTEngines
0752a2fdb670
·frerot on Jul 10 2020, 00:06.

Jul 9 2020

have the same seed for surface gentor across mpi processes
6c2964a9d4d1
·frerot on Jul 9 2020, 20:35.
adding tests for partitioner
9775a947c07f
·frerot on Jul 9 2020, 20:34.
removed stray tm.finalize's in tests
212e9544374c
·frerot on Jul 9 2020, 17:49.
split fftw mpi interface
ebfd54d08a16
·frerot on Jul 9 2020, 16:58.
passing communicator to mpi interface instead of assuming WORLD
4ced5dac6591
·frerot on Jul 9 2020, 16:30.

Jul 6 2020

tentative implementation of surface generation with mpi
5b293e6eba23
·frerot on Jul 6 2020, 04:17.

Jul 4 2020

added mpi reductions to loops
3f746e302ec4
·frerot on Jul 4 2020, 15:44.

Jul 2 2020

logging info on root proc
dfa9798ca373
·frerot on Jul 2 2020, 17:34.
added FFTMPIEngine
8facf8e0cda6
·frerot on Jul 2 2020, 16:59.

Jul 1 2020

added rank and reduce to mpi interface
8327d3f42110
·frerot on Jul 1 2020, 15:24.
no need for type traits to print enum labels
962ac4122e60
·frerot on Jul 1 2020, 15:14.
added reserve method to array and grid base
ddca5e722d54
·frerot on Jul 1 2020, 05:23.
allowing subclasses of FFTEngine
cb641f5bb816
·frerot on Jul 1 2020, 05:20.
safeguarding initialization functions
ddd01b4279a8
·frerot on Jul 1 2020, 05:20.

Jun 28 2020

proper initializing of mpi and fftw with threads
1a1af8988bd3
·frerot on Jun 28 2020, 17:32.
making fftengine internals more accessible for subclassing
37620cc9f8b9
·frerot on Jun 28 2020, 15:09.
ensuring initialize and finalized get called
04fa2ac30483
·frerot on Jun 28 2020, 03:09.

Jun 25 2020

getting rid of BOOST_PP_STRINGIZE
f1073dba0c14
·frerot on Jun 25 2020, 17:43.
added access to yield stress and hardening modulus in residual
7dbb2d1099f2
·frerot on Jun 25 2020, 16:42.
removed FFTPlanManager and consorts
a66ead09e464
·frerot on Jun 25 2020, 03:06.
simplified alloc of in/out pointers in FFTEngine
aa1de33be858
·frerot on Jun 25 2020, 02:38.
making FFTEngine work with fftw flags >= FFTW_MEASURE
5b7d5e177fcd
·frerot on Jun 25 2020, 02:24.
removed remaining calls to FFTPlanManager
8f3b1410b161
·frerot on Jun 25 2020, 00:54.

Jun 24 2020

cleaning up the use of preprocessor macros
3cc1d8a160a7
·frerot on Jun 24 2020, 05:07.
removed unecessary LONG_PRECISION macro guard for fftw interface
548c812ae786
·frerot on Jun 24 2020, 04:28.
moved implementation of legacy surface statistics to separate cpp
75a2de973a73
·frerot on Jun 24 2020, 04:16.
using holder type for fftw plans in FFTEngine
d66116666bb9
·frerot on Jun 24 2020, 01:18.
fixing long double fftw interface
b4bacea3061c
·frerot on Jun 24 2020, 01:16.

tamaas/srcpetscfc8c55c146125067dc9b0ad…

Feb 16 2021

Jan 7 2021

Jan 5 2021

Jan 4 2021

Jan 1 2021

Dec 31 2020

Dec 30 2020

Dec 14 2020

Dec 10 2020

Dec 9 2020

Dec 8 2020

Dec 7 2020

Dec 4 2020

Dec 1 2020

Nov 27 2020

Nov 25 2020

Oct 23 2020

Sep 1 2020

Aug 31 2020

Aug 13 2020

Aug 8 2020

Aug 6 2020

Aug 3 2020

Aug 2 2020

Aug 1 2020

Jul 29 2020

Jul 28 2020

Jul 27 2020

Jul 24 2020

Jul 17 2020

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Jul 14 2020

Jul 12 2020

Jul 11 2020

Jul 10 2020

Jul 9 2020

Jul 6 2020

Jul 4 2020

Jul 2 2020

Jul 1 2020

Jun 28 2020

Jun 25 2020

Jun 24 2020

tamaas/src
petscfc8c55c146125067dc9b0ad…