R4670/testsmaster
R4670/tests
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
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93d5100bbbce | tlemaire | introduced lambda function for test.execute calls | Apr 22 2020 | |||
8f0bbde630a7 | tlemaire | renamed fibers point-neuron models for better interpretability. completed fiber… | Mar 27 2020 | |||
27d8aafffa88 | tlemaire | Created Drive objects inheritance scheme (now used in all model classes). | Feb 3 2020 | |||
9d0666784d2d | tlemaire | Created AcousticSource class to be used for US simulations. | Feb 3 2020 | |||
c995e8999df7 | tlemaire | Modified Lookup class (new properties, corrected methods). | Jan 26 2020 | |||
a29eea02e330 | tlemaire | changed Lookup repr method. added test_lkp test file. | Dec 4 2019 | |||
bc1800471252 | tlemaire | created Timeprotocol and PulsedProtocol classes, now used in pneuron, nbls and… | Nov 13 2019 | |||
bd840351d13f | tlemaire | corrected SweeneyNode alpham equation according to Basser and Roth, 1991. | Sep 10 2019 | |||
4c34c2a9dc9a | tlemaire | adapted test_sims (avoiding sweeney neuron) | Aug 29 2019 | |||
22abb7710105 | tlemaire | created separate test module with TestBase class. renamed test_basic into… | Jun 28 2019 | |||
d909927fd268 | tlemaire | defined TestBase class with smart subset handling (inherited by TestSims) | Jun 27 2019 | |||
eb0324a5cd27 | tlemaire | rewrote test_basic into a class | Jun 27 2019 | |||
fdebb58e8442 | tlemaire | refefined derEffstates construction to return a dictionary of function. | Jun 19 2019 | |||
1a9277e6bbb4 | tlemaire | corrected error in subset parsing | Jun 19 2019 | |||
d4798d527ccc | tlemaire | added custom parsing to paper figure scripts | Jun 17 2019 | |||
66eaf2f41fba | tlemaire | corrected y, t order error in nbls.fullDerivatives. added custom parsing in… | Jun 17 2019 | |||
b0f51febd195 | tlemaire | updated constants | Jun 13 2019 | |||
b42a0de93240 | tlemaire | updated all file headers | Jun 12 2019 | |||
6e017b421f3e | tlemaire | replaced "neuron" by "pneuron" for all PointNeuron instances | Jun 12 2019 | |||
af6f9a02ed42 | Theo Lemaire | reformatted simulate methods of bls, pneuron and nbls classes to return output… | May 31 2019 | |||
e08e8c736efa | Theo Lemaire | replaced progressbar2 by tqdm | May 29 2019 | |||
440f5459adf4 | Theo Lemaire | added HybridSimulator used for nbls.runHybrid | May 29 2019 | |||
9f09f2fdc039 | Theo Lemaire | Changed titration functions (now using generic titrate), Implemented Xinf… | Apr 4 2019 | |||
2f63e4926c36 | tlemaire | improved plotRheobaseAmps function. improved arguments parsing in command line… | Nov 22 2018 | |||
fe08c7f79e09 | tlemaire | moved run_tests.sh to tests folder | Sep 28 2018 | |||
8819bbb0e66f | tlemaire | cleaned up deprecated folder. added notebook about balance quasi-steady… | Sep 25 2018 | |||
954e545fa6ac | tlemaire | turned intermolecular pressure test script into notebook. removed Input error… | Sep 24 2018 | |||
de613ac9c35a | tlemaire | replaced SonicNeuron by NeuronalBilayerSonophore | Sep 23 2018 | |||
2a334b211bff | tlemaire | major changes to the package (PointNeuron, SonicNeuron, ...) | Sep 23 2018 | |||
4404c3e28711 | tlemaire | merged BLS_lookups file into 1 file with 2D (a, Qm0) lookup | Sep 12 2018 | |||
54c29644be81 | tlemaire | replaced runEffective by runSONIC and 'effective' keyword by 'sonic'. | Aug 25 2018 | |||
043172721a44 | tlemaire | changed package name to PySONIC. | Aug 21 2018 | |||
2267460a3b52 | tlemaire | removed NEURON related code from package (runNEURON method, NMODL folder), used… | Aug 21 2018 | |||
1f7dfe26adab | tlemaire | removed stimulation parameters assignment in MOD files | Jul 24 2018 | |||
e18d135cbc54 | tlemaire | new lookups for RS, FS, LTS, RE and TC neurons with extended charge range (down… | Jul 24 2018 | |||
9a37cd335585 | tlemaire | replaced titrateEStim and titrateAStim funcitons by EStimTitrator and… | Jul 24 2018 | |||
b1b868c26791 | tlemaire | replaced runAStim function by AStimWorker class, added multiprocessing option… | Jul 23 2018 | |||
8e3d2db927b5 | tlemaire | grouped mod files in single directory. defined stimonoff procedure in separate… | Jul 18 2018 | |||
3b9d8b293e8a | tlemaire | minor modifications to plotEffVars, rescale and test_intermolecular_pressure.py | Jun 18 2018 | |||
7d33ab6ec1f9 | tlemaire | added script to test intermoleulcar pressure approximation. | May 25 2018 | |||
70d9c59ab1d9 | tlemaire | added IB testing in test_values script | Apr 18 2018 | |||
d5e56c2f9c40 | tlemaire | replaced detectSpikes by the more robust findPeaks. added a plot_spikes script… | Apr 4 2018 | |||
dd51b4283191 | tlemaire | corrected TOFF integration error in SolverElec. added PW tests to test_basic.py | Mar 19 2018 | |||
5b8f09fbd295 | tlemaire | renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to… | Mar 16 2018 | |||
50e85131e3d9 | tlemaire | added runMechSingle to simutils and MECH_run script | Mar 15 2018 | |||
1edd575f6465 | Theo Lemaire | replaced DF by DC, and added pandas dataframes to store and retrieve simulation… | Mar 13 2018 | |||
edd5594d9646 | Theo Lemaire | replaced channels by neurons | Mar 12 2018 | |||
63c842041ef8 | tlemaire | updated README and LICENCSE files. added extra BLS lookups. corrected titration… | Mar 7 2018 | |||
1bb50e8f0025 | tlemaire | validated effective method for LeechT neuron, added that neuron to test_values. | Nov 27 2017 | |||
6249b5298f4c | tlemaire | debugged double printing issue of logging statements | Sep 12 2017 | |||
6be1756dda64 | tlemaire | added biomech and biophys parameters directly as BilayerSonophore class… | Sep 12 2017 | |||
ffed8b864bbf | tlemaire | replaced getopt with argparse in test scripts | Sep 6 2017 | |||
7fff2117cd10 | tlemaire | replaced printPct by progressbar | Sep 6 2017 | |||
6688904b2a82 | tlemaire | added smart loading of derived parameters from lookup file at BLS initiation | Sep 3 2017 | |||
9015dddabee1 | tlemaire | test pre-commit hook | Sep 3 2017 | |||
f51d67fdf64a | tlemaire | updated test_values | Sep 3 2017 | |||
92e2cd326a4e | tlemaire | added profiling option for each method inside test_basic.py, using cProfile and… | Sep 3 2017 | |||
f875411afd08 | tlemaire | separated test into test_basic (initiating solvers and running simple… | Sep 2 2017 | |||
cf8e6794b04c | tlemaire | debugged and validated new runEffective method: interpolation datasets at… | Aug 30 2017 | |||
c5cad185b222 | tlemaire | added getNeuronsDict function to utils | Aug 29 2017 | |||
1ea422ad10eb | tlemaire | optimized effective method: 2D (amp, charge) coefficients interpolators are… | Aug 28 2017 | |||
90c71fb8d8e5 | tlemaire | updated run functions to deal with zero offset. updated test_graphs | Aug 28 2017 | |||
3120330fdccd | tlemaire | updated test_graphs.py | Aug 28 2017 | |||
c61b8e3492f6 | tlemaire | renamed LoadParams to load_BLS_params | Aug 28 2017 | |||
b50efb81b3cb | tlemaire | updated test_basic.py with more thorough tests. Added more thorough input… | Aug 28 2017 | |||
c9053e689690 | tlemaire | added titrateEStim and titrateEStimBatch functions | Aug 25 2017 | |||
3c218a52595b | tlemaire | Added pulsed stimuli handling to SolverElec. Implemented moved titration… | Aug 25 2017 | |||
4f9a8fd2aed4 | tlemaire | moved some utils functions into simutils & pltutils modules | Aug 23 2017 | |||
abfba2e921d7 | tlemaire | first commit to c4science | Aug 23 2017 |
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