R4670/testsmaster
R4670/tests
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
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de613ac9c35a | tlemaire | replaced SonicNeuron by NeuronalBilayerSonophore | Sep 23 2018 | |||
2a334b211bff | tlemaire | major changes to the package (PointNeuron, SonicNeuron, ...) | Sep 23 2018 | |||
4404c3e28711 | tlemaire | merged BLS_lookups file into 1 file with 2D (a, Qm0) lookup | Sep 12 2018 | |||
54c29644be81 | tlemaire | replaced runEffective by runSONIC and 'effective' keyword by 'sonic'. | Aug 25 2018 | |||
043172721a44 | tlemaire | changed package name to PySONIC. | Aug 21 2018 | |||
2267460a3b52 | tlemaire | removed NEURON related code from package (runNEURON method, NMODL folder), used… | Aug 21 2018 | |||
1f7dfe26adab | tlemaire | removed stimulation parameters assignment in MOD files | Jul 24 2018 | |||
e18d135cbc54 | tlemaire | new lookups for RS, FS, LTS, RE and TC neurons with extended charge range (down… | Jul 24 2018 | |||
9a37cd335585 | tlemaire | replaced titrateEStim and titrateAStim funcitons by EStimTitrator and… | Jul 24 2018 | |||
b1b868c26791 | tlemaire | replaced runAStim function by AStimWorker class, added multiprocessing option… | Jul 23 2018 | |||
8e3d2db927b5 | tlemaire | grouped mod files in single directory. defined stimonoff procedure in separate… | Jul 18 2018 | |||
3b9d8b293e8a | tlemaire | minor modifications to plotEffVars, rescale and test_intermolecular_pressure.py | Jun 18 2018 | |||
7d33ab6ec1f9 | tlemaire | added script to test intermoleulcar pressure approximation. | May 25 2018 | |||
70d9c59ab1d9 | tlemaire | added IB testing in test_values script | Apr 18 2018 | |||
d5e56c2f9c40 | tlemaire | replaced detectSpikes by the more robust findPeaks. added a plot_spikes script… | Apr 4 2018 | |||
dd51b4283191 | tlemaire | corrected TOFF integration error in SolverElec. added PW tests to test_basic.py | Mar 19 2018 | |||
5b8f09fbd295 | tlemaire | renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to… | Mar 16 2018 | |||
50e85131e3d9 | tlemaire | added runMechSingle to simutils and MECH_run script | Mar 15 2018 | |||
1edd575f6465 | Theo Lemaire | replaced DF by DC, and added pandas dataframes to store and retrieve simulation… | Mar 13 2018 | |||
edd5594d9646 | Theo Lemaire | replaced channels by neurons | Mar 12 2018 | |||
63c842041ef8 | tlemaire | updated README and LICENCSE files. added extra BLS lookups. corrected titration… | Mar 7 2018 | |||
1bb50e8f0025 | tlemaire | validated effective method for LeechT neuron, added that neuron to test_values. | Nov 27 2017 | |||
6249b5298f4c | tlemaire | debugged double printing issue of logging statements | Sep 12 2017 | |||
6be1756dda64 | tlemaire | added biomech and biophys parameters directly as BilayerSonophore class… | Sep 12 2017 | |||
ffed8b864bbf | tlemaire | replaced getopt with argparse in test scripts | Sep 6 2017 | |||
7fff2117cd10 | tlemaire | replaced printPct by progressbar | Sep 6 2017 | |||
6688904b2a82 | tlemaire | added smart loading of derived parameters from lookup file at BLS initiation | Sep 3 2017 | |||
9015dddabee1 | tlemaire | test pre-commit hook | Sep 3 2017 | |||
f51d67fdf64a | tlemaire | updated test_values | Sep 3 2017 | |||
92e2cd326a4e | tlemaire | added profiling option for each method inside test_basic.py, using cProfile and… | Sep 3 2017 | |||
f875411afd08 | tlemaire | separated test into test_basic (initiating solvers and running simple… | Sep 2 2017 | |||
cf8e6794b04c | tlemaire | debugged and validated new runEffective method: interpolation datasets at… | Aug 30 2017 | |||
c5cad185b222 | tlemaire | added getNeuronsDict function to utils | Aug 29 2017 | |||
1ea422ad10eb | tlemaire | optimized effective method: 2D (amp, charge) coefficients interpolators are… | Aug 28 2017 | |||
90c71fb8d8e5 | tlemaire | updated run functions to deal with zero offset. updated test_graphs | Aug 28 2017 | |||
3120330fdccd | tlemaire | updated test_graphs.py | Aug 28 2017 | |||
c61b8e3492f6 | tlemaire | renamed LoadParams to load_BLS_params | Aug 28 2017 | |||
b50efb81b3cb | tlemaire | updated test_basic.py with more thorough tests. Added more thorough input… | Aug 28 2017 | |||
c9053e689690 | tlemaire | added titrateEStim and titrateEStimBatch functions | Aug 25 2017 | |||
3c218a52595b | tlemaire | Added pulsed stimuli handling to SolverElec. Implemented moved titration… | Aug 25 2017 | |||
4f9a8fd2aed4 | tlemaire | moved some utils functions into simutils & pltutils modules | Aug 23 2017 | |||
abfba2e921d7 | tlemaire | first commit to c4science | Aug 23 2017 |
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