Diffusion PySONIC (old) (master) History

R4670/README.md
master1a8775592b0ced4c004d649…

Apr 13 2021

added context to README
5a9cf900fc2b
·tlemaire on Apr 13 2021, 18:04.

Mar 3 2021

added emphasis on git-lfs requirement in REAMDE.
0df71d46a8b6
·tlemaire on Mar 3 2021, 15:50.

Mar 2 2021

added transition handling in computeTimeStep.
28b9ed25d674
·tlemaire on Mar 2 2021, 15:03.

May 18 2020

updated README.
ef08cb208ad1
·tlemaire on May 18 2020, 15:22.

Apr 18 2020

updated README
83d7d8df16fa
·tlemaire on Apr 18 2020, 15:52.

Apr 17 2020

updated README
b80a24a22518
·tlemaire on Apr 17 2020, 20:46.
harmonized repr, desc and filecodes methods across protocols.
e3ca275ebe0f
·tlemaire on Apr 17 2020, 19:35.

Apr 15 2020

implemented better solvers (now inside solvers module), including an…
b77cd9e4eb12
·tlemaire on Apr 15 2020, 20:53.

Apr 4 2020

moved example scripts to examples folder and defined README.mdpp markdown…
afdde67646ea
·tlemaire on Apr 4 2020, 16:40.

Mar 31 2020

added ASTIM_REL_CONV_THR to constants file.
9239911c1f35
·tlemaire on Mar 31 2020, 18:41.

Mar 27 2020

renamed fibers point-neuron models for better interpretability. completed fiber…
8f0bbde630a7
·tlemaire on Mar 27 2020, 20:37.

Feb 14 2020

updated README (added instructions for git-lfs install)
31cc2d15993a
·tlemaire on Feb 14 2020, 11:12.

Feb 3 2020

Created Drive objects inheritance scheme (now used in all model classes).
27d8aafffa88
·tlemaire on Feb 3 2020, 21:45.
Created AcousticSource class to be used for US simulations.
9d0666784d2d
·tlemaire on Feb 3 2020, 14:26.

Dec 6 2019

re-ran and completed STN notebook
d0b57c5e137d
·tlemaire on Dec 6 2019, 17:43.

Dec 4 2019

updated README with instructions on how to cite.
82b1e406d267
·tlemaire on Dec 4 2019, 16:15.

Nov 13 2019

created Timeprotocol and PulsedProtocol classes, now used in pneuron, nbls and…
bc1800471252
·tlemaire on Nov 13 2019, 18:11.

Nov 1 2019

modified README
0394f06c57fd
·tlemaire on Nov 1 2019, 14:42.

Oct 2 2019

commented out numdifftools import. updated README.md
d992992a3693
·tlemaire on Oct 2 2019, 08:59.

Aug 19 2019

removed paper figures folder (now in separate repo)
3c76710406c6
·tlemaire on Aug 19 2019, 09:56.

Jul 24 2019

updated README to latest changes.
8e1403abecb9
·tlemaire on Jul 24 2019, 11:44.

Jul 1 2019

added option to provide simAndSave or simulate to batches. implemented addMeta…
d1a3fbaefd83
·tlemaire on Jul 1 2019, 16:46.

Jun 27 2019

updated README
9ac705d6dbee
·tlemaire on Jun 27 2019, 19:12.

Jun 25 2019

corrected README
f83e0e973bd3
·tlemaire on Jun 25 2019, 19:19.
updated README
65a9529c2978
·tlemaire on Jun 25 2019, 18:52.
added precisions about derStates requirements in README
21dda94243b8
·tlemaire on Jun 25 2019, 15:09.
finished implementing pneuron.buildDerEffStates method to automatically create…
4742d6a43494
·tlemaire on Jun 25 2019, 14:59.

Jun 17 2019

replaced plotPhaseDiagram by PhaseDiagram class inheriting from ComparativePlot…
e01fa72e6143
·tlemaire on Jun 17 2019, 17:55.

Jun 15 2019

added simkey to meta dictionary. added automatic parsing and labeling of…
c14fa0da1fd7
·tlemaire on Jun 15 2019, 18:32.

Jun 13 2019

updated README with more information on repo content
94fbf591d2b0
·tlemaire on Jun 13 2019, 04:13.
updated README with future developments and license information
502b8d45d5bf
·tlemaire on Jun 13 2019, 03:36.
updated README headers
812cb5c1cb3a
·tlemaire on Jun 13 2019, 03:18.

Jun 12 2019

adapted README recipe to cleaned up neuron classes
0ab79b08684a
·tlemaire on Jun 12 2019, 17:16.

Jun 11 2019

corrected README
bc6f2d49e7db
·tlemaire on Jun 11 2019, 17:33.
corrected numbering errors in README
ea20cb84a617
·tlemaire on Jun 11 2019, 16:59.
added neuron templyte class. added procedure to follow to add new neuron types…
0028dbdfe69f
·tlemaire on Jun 11 2019, 16:56.

Jun 10 2019

minor change to getCycleProfiles
ed095e030274
·tlemaire on Jun 10 2019, 21:56.
moved example script in README and updated rest of the text.
9c883a796eff
·tlemaire on Jun 10 2019, 21:45.

May 24 2019

added Araneg and Irange args to run_astim.py
3a8d7d040f27
·Theo Lemaire on May 24 2019, 16:26.

Nov 22 2018

improved plotRheobaseAmps function. improved arguments parsing in command line…
2f63e4926c36
·tlemaire on Nov 22 2018, 17:58.

Sep 24 2018

moved relevant plot scripts to scripts folder. Turned analysis scripts into…
4d53b2a42b5e
·tlemaire on Sep 24 2018, 21:00.

Sep 23 2018

changed scripts names to lowercase
559985791c43
·tlemaire on Sep 23 2018, 16:18.
replaced SonicNeuron by NeuronalBilayerSonophore
de613ac9c35a
·tlemaire on Sep 23 2018, 15:33.
major changes to the package (PointNeuron, SonicNeuron, ...)
2a334b211bff
·tlemaire on Sep 23 2018, 14:28.

Aug 30 2018

added sequential color mode to plotSignals. updated REDAME.md
eb527762650d
·tlemaire on Aug 30 2018, 20:10.

Aug 21 2018

changed package name to PySONIC.
043172721a44
·tlemaire on Aug 21 2018, 16:19.

Mar 12 2018

replaced channels by neurons
edd5594d9646
·Theo Lemaire on Mar 12 2018, 20:01.

Mar 7 2018

updated README and LICENCSE files. added extra BLS lookups. corrected titration…
63c842041ef8
·tlemaire on Mar 7 2018, 15:28.

Mar 2 2018

extended installation instructions in the README file
d12141d0c48b
·tlemaire on Mar 2 2018, 17:57.

Sep 12 2017

emphasized code in README
3cb02a5f8d12
·tlemaire on Sep 12 2017, 18:06.
modified README file to include installation and usage info
d67a94aa1050
·tlemaire on Sep 12 2017, 17:57.

Aug 28 2017

updated test_basic.py with more thorough tests. Added more thorough input…
b50efb81b3cb
·tlemaire on Aug 28 2017, 14:14.

Aug 23 2017

first commit to c4science
abfba2e921d7
·tlemaire on Aug 23 2017, 14:28.