Diffusion PySONIC (old) (master) History

R4670/tests/test_basic.py
master4d047c49f50d5fc675df036…

Jun 19 2019

refefined derEffstates construction to return a dictionary of function.
fdebb58e8442
·tlemaire on Jun 19 2019, 19:12.
corrected error in subset parsing
1a9277e6bbb4
·tlemaire on Jun 19 2019, 15:46.

Jun 17 2019

added custom parsing to paper figure scripts
d4798d527ccc
·tlemaire on Jun 17 2019, 22:08.
corrected y, t order error in nbls.fullDerivatives. added custom parsing in…
66eaf2f41fba
·tlemaire on Jun 17 2019, 21:43.

Jun 12 2019

updated all file headers
b42a0de93240
·tlemaire on Jun 12 2019, 23:15.
replaced "neuron" by "pneuron" for all PointNeuron instances
6e017b421f3e
·tlemaire on Jun 12 2019, 12:58.

May 31 2019

reformatted simulate methods of bls, pneuron and nbls classes to return output…
af6f9a02ed42
·Theo Lemaire on May 31 2019, 14:43.

May 29 2019

replaced progressbar2 by tqdm
e08e8c736efa
·Theo Lemaire on May 29 2019, 18:35.
added HybridSimulator used for nbls.runHybrid
440f5459adf4
·Theo Lemaire on May 29 2019, 16:17.

Nov 22 2018

improved plotRheobaseAmps function. improved arguments parsing in command line…
2f63e4926c36
·tlemaire on Nov 22 2018, 17:58.

Sep 23 2018

replaced SonicNeuron by NeuronalBilayerSonophore
de613ac9c35a
·tlemaire on Sep 23 2018, 15:33.
major changes to the package (PointNeuron, SonicNeuron, ...)
2a334b211bff
·tlemaire on Sep 23 2018, 14:28.

Sep 12 2018

merged BLS_lookups file into 1 file with 2D (a, Qm0) lookup
4404c3e28711
·tlemaire on Sep 12 2018, 18:44.

Aug 25 2018

replaced runEffective by runSONIC and 'effective' keyword by 'sonic'.
54c29644be81
·tlemaire on Aug 25 2018, 02:15.

Aug 21 2018

changed package name to PySONIC.
043172721a44
·tlemaire on Aug 21 2018, 16:19.
removed NEURON related code from package (runNEURON method, NMODL folder), used…
2267460a3b52
·tlemaire on Aug 21 2018, 14:29.

Mar 19 2018

corrected TOFF integration error in SolverElec. added PW tests to test_basic.py
dd51b4283191
·tlemaire on Mar 19 2018, 20:03.

Mar 16 2018

renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to…
5b8f09fbd295
·tlemaire on Mar 16 2018, 12:06.

Mar 13 2018

replaced DF by DC, and added pandas dataframes to store and retrieve simulation…
1edd575f6465
·Theo Lemaire on Mar 13 2018, 01:14.

Mar 12 2018

replaced channels by neurons
edd5594d9646
·Theo Lemaire on Mar 12 2018, 20:01.

Sep 12 2017

debugged double printing issue of logging statements
6249b5298f4c
·tlemaire on Sep 12 2017, 18:56.
added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 6 2017

replaced getopt with argparse in test scripts
ffed8b864bbf
·tlemaire on Sep 6 2017, 17:10.
replaced printPct by progressbar
7fff2117cd10
·tlemaire on Sep 6 2017, 14:34.

Sep 3 2017

added smart loading of derived parameters from lookup file at BLS initiation
6688904b2a82
·tlemaire on Sep 3 2017, 19:15.
test pre-commit hook
9015dddabee1
·tlemaire on Sep 3 2017, 18:01.
updated test_values
f51d67fdf64a
·tlemaire on Sep 3 2017, 17:23.
added profiling option for each method inside test_basic.py, using cProfile and…
92e2cd326a4e
·tlemaire on Sep 3 2017, 16:53.

Sep 2 2017

separated test into test_basic (initiating solvers and running simple…
f875411afd08
·tlemaire on Sep 2 2017, 18:44.

Aug 30 2017

debugged and validated new runEffective method: interpolation datasets at…
cf8e6794b04c
·tlemaire on Aug 30 2017, 15:46.

Aug 29 2017

added getNeuronsDict function to utils
c5cad185b222
·tlemaire on Aug 29 2017, 15:38.

Aug 28 2017

optimized effective method: 2D (amp, charge) coefficients interpolators are…
1ea422ad10eb
·tlemaire on Aug 28 2017, 18:02.
renamed LoadParams to load_BLS_params
c61b8e3492f6
·tlemaire on Aug 28 2017, 14:20.
updated test_basic.py with more thorough tests. Added more thorough input…
b50efb81b3cb
·tlemaire on Aug 28 2017, 14:14.

Aug 25 2017

added titrateEStim and titrateEStimBatch functions
c9053e689690
·tlemaire on Aug 25 2017, 14:59.
Added pulsed stimuli handling to SolverElec. Implemented moved titration…
3c218a52595b
·tlemaire on Aug 25 2017, 13:06.

Aug 23 2017

moved some utils functions into simutils & pltutils modules
4f9a8fd2aed4
·tlemaire on Aug 23 2017, 16:28.
first commit to c4science
abfba2e921d7
·tlemaire on Aug 23 2017, 14:28.