Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (aterrier-plotUpdate) History

History
aterrier-plotUpdate532fb710a9107a12e505ff3…

Jun 7 2021

refactor: update setup with new config file entries
532fb710a910
·Matthieu Boubat (lbovenus) on Jun 7 2021, 17:08.
Merge branch 'measurements_revision' into 'master'
9339b0bfce73
·boubat on Jun 7 2021, 16:20.
feat: add a method to check shoulder side inconsistency with scapula landmarks
95a6c5558b69
·tag: v1.2.0
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:48.
refactor: remove deprecated elements
a7e18257b5e6
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:39.
feat: check scapula landmarks consistency with shoulder side
47b8e40b862c
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:33.
refactor: change some default properties and remove one deprecated property
4ffb7c19ce8e
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:30.
refactor: extract method
89040c90252f
·Matthieu Boubat (lbovenus) on Jun 7 2021, 10:40.
refactor: adapt data tabulation functions to new SCase
4e7e51256fdc
·Matthieu Boubat (lbovenus) on Jun 7 2021, 09:55.

Jun 4 2021

refactor: rewrite totally measureSCase with new SCase data and method structure
288586e6a7ef
·Matthieu Boubat (lbovenus) on Jun 4 2021, 19:41.
refactor: add varargin to methods called by measureSCase special measurements
7b9028719737
·Matthieu Boubat (lbovenus) on Jun 4 2021, 19:35.
fix: prevent char/string conflict
741660c11f07
·Matthieu Boubat (lbovenus) on Jun 4 2021, 19:34.
refactor: format methods to new method structure
21be82781c48
·Matthieu Boubat (lbovenus) on Jun 4 2021, 18:09.
refactor: prevent recursice method call to display functions output
2f29ed2c85d9
·Matthieu Boubat (lbovenus) on Jun 4 2021, 18:08.
feat: implement function to create empty SCases
f3f049267438
·Matthieu Boubat (lbovenus) on Jun 4 2021, 18:07.
refactor: extrac and format methods
73037b50d9cd
·Matthieu Boubat (lbovenus) on Jun 4 2021, 17:02.
fix: fix typos
2917fad9056e
·Matthieu Boubat (lbovenus) on Jun 4 2021, 16:37.
refactor: extract method and format object
6551526c54a2
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:39.
fix: change boolean operation | for & in success evaluation
12276452eb75
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:27.
refactor: extract and format methods
e1eeea14b292
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:25.
refactor rewrite Glenoid to follow new methods structure
efedae91716f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 14:17.
refactor: rewrite Humerus to follow new methods structure
1f2b900a63c7
·Matthieu Boubat (lbovenus) on Jun 4 2021, 14:02.
refactor: extract method
0186d859aedd
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename and reduce method scope
6c263c1c1a91
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: extract and clean methods
427af013b751
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: change method call order
b06c5c72347f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: add output success argument
219d1d7ece6c
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: update method name
525d3a0b82c4
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
improve: make othogonal complement usable with other Vector
ce8c4ab9d90a
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat: add emptiness check for scapula and shoulder
b174c68a2103
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
fix: rename abstract method to abide by the new implementation
35de437afb0f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename measure() to measureFirst()
a47b7a62a073
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: organise Glenoid methods
18b77e286593
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method
78d17b84ff5c
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method, output arguments, create morphology and measure methods
942e6d6ce350
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: write object methods in separate files
d0cc46351ea7
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: simplify objects constructor
0fe4702f8808
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: remove the need for two child classes and update utilisation
2c2b3728cbfc
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: change object name and move it to utils
f1573e653332
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat: add left and right shoulders as SCase properties
bf44e1088b42
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
perf: improve conditions handling and recursive call
d1462d446270
·Matthieu Boubat (lbovenus) / Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat:WIP Implement function to recursively call a specific function on all the…
8c58bb4a0fd7
·Matthieu Boubat (lbovenus) / Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
Merge branch 'time_log_execution' into 'master'
657b1a04e841
·boubat on Jun 4 2021, 13:56.
feat: add method to time and log the execution of a given function
bc0c35e90b4b
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:56.
Merge branch 'logger_revision' into 'master'
b588b6334874
·boubat on Jun 4 2021, 12:29.
refactor: add unactive Logger check before log writing and update doc
1ca45e44000b
·Matthieu Boubat (lbovenus) on Jun 4 2021, 12:27.
feat: make logger ubiquitous
49e72570841a
·Matthieu Boubat (lbovenus) on Jun 4 2021, 12:20.

Jun 2 2021

Update README.md
784b85a32bbb
·aterrier on Jun 2 2021, 21:13.

Jun 1 2021

Merge branch 'export_data_revision' into 'master'
047be108ed3b
·boubat on Jun 1 2021, 18:35.
refactor: Change concatenation for table outer join.
a69e46bd180b
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Export two different rows for auto/manual SCase data.
1cb19cfdc519
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Remove extra '_' in some variable names.
29871e28c498
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Improve infinite recursion loop safeguard to any level of nested…
a3d392569110
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Remove typo in docstring.
91285749c26b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Update README.
cbb1dc771c2f
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Update docstring.
d117fa36fbd6
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Add optional argument list of cases and file saving. Update…
105cb28e074f
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Change export function name and implementation.
6fe191783718
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Add docstring and update comments.
c8a2431e9c9b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Add recursion and arguments parser.
a34105a3c73b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Finish implementation of objects tabulation function.
3390335c7340
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Prevent forbiden table column name starting with '_'.
5287912fb246
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat:WIP Add functions to automatically tabulate properties of any given object.
e606f6705785
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.

May 21 2021

Merge branch 'load_normal_pathological' into 'master'
5407f618736d
·boubat on May 21 2021, 11:40.
feat: Allow to load all normal or pathological cases.
6122fa8767f0
·Matthieu Boubat (lbovenus) on May 21 2021, 11:39.

May 20 2021

fix: Fix char/string bad mixing.
40a669da7e26
·Matthieu Boubat (lbovenus) on May 20 2021, 16:52.
Merge branch 'clean' into 'master'
446df2f92a11
·boubat on May 20 2021, 16:18.
refactor: Remove deprecated classes and move general purpose classes to the…
71604e1d9392
·boubat on May 20 2021, 16:11.
Merge branch 'config_file_revision' into 'master'
f23931f03d50
·boubat on May 20 2021, 15:34.
fix: Change default config file to work with updated code.
fe6d651e72db
·boubat on May 20 2021, 15:33.
refactor: Update config extraction method across system.
c99e6574cba5
·boubat on May 20 2021, 15:28.
refactor: Change default config creation to create a config.json file.
94b5f04f6e1d
·boubat on May 20 2021, 14:20.
feat: Add function to parse a config json file.
0a6fd799e477
·boubat on May 20 2021, 14:02.
Merge branch 'nathan_slices_filter' into 'master'
e687b8260c8d
·boubat on May 20 2021, 13:16.
refactor: Uncomment out the filtering of dicom volume.
5f7d12c9d877
·Matthieu Boubat (lbovenus) on May 20 2021, 13:07.

May 19 2021

Merge branch 'load_them_all' into 'master'
7aa47bcee050
·boubat on May 19 2021, 14:33.
refactor: Allow loadSCase to load all the cases with the argument '*'.
094a66095fcc
·Matthieu Boubat (lbovenus) on May 19 2021, 14:32.
Merge branch 'multiple_case_loading' into 'master'
98b1c8372890
·boubat on May 19 2021, 14:16.
feat: Allow to load multiple SCases from a list of SCaseID.
824eabc2dc38
·Matthieu Boubat (lbovenus) on May 19 2021, 14:15.
Merge branch 'slice_pixel_coordinates_fix' into 'master'
2cadbe59756a
·boubat on May 19 2021, 14:02.
refactor: Adapt pixel coordinates transformation for left side shoulder.
47e03f89908c
·Matthieu Boubat (lbovenus) on May 19 2021, 14:00.

May 7 2021

Merge branch 'humerus_side' into 'master'
df3793e68a93
·boubat on May 7 2021, 13:13.
refactor: Update methods to take into account new file names containing…
c972dfcc3ad1
·Matthieu Boubat (lbovenus) on May 7 2021, 13:12.

May 5 2021

fix: Fix wrong methods and properties names.
35a68cd60da1
·Matthieu Boubat (lbovenus) on May 5 2021, 18:29.
Merge branch 'rotator_cuff_slice_parameters' into 'master'
4c31af5c2cdb
·boubat on May 5 2021, 18:10.
refactor: Change slice size and position.
1e234606ba89
·Matthieu Boubat (lbovenus) on May 5 2021, 18:09.
Merge branch 'load_measure_refactor' into 'master'
0e430a512032
·boubat on May 5 2021, 17:47.
refactor: Make auto scapula data loading prioritize current shoulder side.
64c30663f9ab
·boubat on May 5 2021, 17:46.
feat: Add methods that bundle several submethods.
460092f903be
·boubat on May 5 2021, 17:44.
refactor: Extract amira/slicer data loading methods from general load method.
fca61af81212
·boubat on May 5 2021, 17:05.
refactor: Change char arrays for strings.
518851eaf0c0
·boubat on May 5 2021, 17:04.
Merge branch 'teres_minor_imbalance' into 'master'
a941f25d8be6
·boubat on May 5 2021, 17:00.
refactor: Change legend location of rotator cuff segmentations 2D plot.
8ca3dd3334e9
·boubat on May 5 2021, 16:52.
feat: Add Teres Minor humeral head insertion and force influence on antero…
46649b7ec7f4
·boubat on May 5 2021, 16:51.

Apr 28 2021

Merge branch 'centroid_plot' into 'master'
bdd284b71c15
·boubat on Apr 28 2021, 12:51.
feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
Merge branch 'dicom_slicer_filter' into 'master'
66b76f663e5c
·boubat on Apr 28 2021, 12:42.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

Merge branch 'muscles_force_vector_modification' into 'master'
ca3a46b334f0
·boubat on Apr 23 2021, 13:42.
refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

Merge branch '3d_slicer_humerus_measurements' into 'master'
e5acaf18666b
·boubat on Apr 21 2021, 16:26.

Historyaterrier-plotUpdate532fb710a9107a12e505ff3…

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Apr 28 2021

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Apr 21 2021

History
aterrier-plotUpdate532fb710a9107a12e505ff3…