Diffusion akantu (bugfixes/python_interface_energy_computations) History

rAKA/src/solver
bugfixes/python_interfa…05a352d13d999d904c2835f…

Jan 2 2019

PETSc compiles adding SolverVector
05a352d13d99
·richart on Jan 2 2019, 17:42.

Dec 30 2018

Scoping more enums
ef8b48beb2fc
·richart on Dec 30 2018, 15:40.

Dec 28 2018

advancing in the petsc dof manager
08a4aeef80c5
·richart on Dec 28 2018, 16:14.
updating the matrix definition
81e90b9978ef
·richart on Dec 28 2018, 16:06.

Jul 19 2018

commit to push before vacations: this version is currently broken
327aad04af0a
·richart on Jul 19 2018, 16:57.

Mar 27 2018

Minor changes int the python insterface
2bbc30b8dd4c
·richart on Mar 27 2018, 17:02.

Mar 11 2018

Bug in pentahedron partitioning
1a2e196d60ef
·richart on Mar 11 2018, 23:51.

Feb 24 2018

Rewrote headers of tests
847ef2e1583c
·richart on Feb 24 2018, 22:37.

Feb 23 2018

Rewrote the headers of the files in src
2d7e93b72235
·richart on Feb 23 2018, 22:03.
Linted everything 'arc --lint --erverything'
80101ddd6e28
·richart on Feb 23 2018, 15:42.

Feb 20 2018

No harsh termination, only exceptions thrown
7064d0e0638c
·richart on Feb 20 2018, 15:34.

Jan 24 2018

added SingularMatrixException
ee16d69a9aa9
·frerot on Jan 24 2018, 16:15.

Dec 14 2017

Modified model initilalization
79286ef9af64
·richart on Dec 14 2017, 03:14.

Dec 5 2017

Merge branch 'features/dofs-separation-rewrote' of c4science…
a0bcead19996
·richart on Dec 5 2017, 10:42.

Dec 4 2017

Passing patch tests in gtests
5e6c78f0d96c
·richart on Dec 4 2017, 11:08.

Dec 3 2017

Tidying the code, going to performance checkers
064eca3bbe3c
·• arichart on Dec 3 2017, 19:16.

Nov 15 2017

Removed the constness of the Communicator to be able to register event handlers
e673c37968c6
·richart on Nov 15 2017, 14:58.

Nov 8 2017

clang-tidy auto-fix second pass for using and auto + performance
98405b386e09
·richart on Nov 8 2017, 18:57.
clang-tidy first pass of auto-fixes
3cb848d814e7
·richart on Nov 8 2017, 02:27.

Nov 7 2017

Refactoring communicator
133a6062c3b5
·richart on Nov 7 2017, 13:56.

Aug 29 2017

Automated creation of matrices in the time step solver
846d4bf44130
·richart on Aug 29 2017, 22:07.

Aug 13 2017

Changes getSize to size for compatibility with STL containers
a2a185177344
·richart on Aug 13 2017, 19:05.

Jun 19 2017

Changing namespace definition
f3288de80211
·richart on Jun 19 2017, 14:16.

Jun 12 2017

Corrected a bunch of tests
675bab9f5b36
·richart on Jun 12 2017, 11:57.

Jun 2 2017

Range-based for improvement
c74726f11f29
·richart on Jun 2 2017, 17:00.
Forced c++14 as a standard
298222cbaef9
·richart on Jun 2 2017, 16:58.

May 30 2017

Could not find The Bug, not sure it is in my code or in my head
dd2df44311fb
·richart on May 30 2017, 16:14.

May 19 2017

Still tracking a bug
848b551583d4
·richart on May 19 2017, 16:34.
Adding more test in the path to fund the parallel solver bug
ce6b1a2fbb9a
·richart on May 19 2017, 16:33.

May 11 2017

Adding missing synchronization in y = A * x
945fff780988
·richart on May 11 2017, 01:51.
Another round of debugging
ca61d1994699
·richart on May 11 2017, 00:50.

Apr 1 2017

Bug fix in element_synchronizer rewrite
a62caba660ec
·richart on Apr 1 2017, 03:21.

Jan 24 2017

Passing communicators to const StaticCommunicator
0035fcd74950
·richart on Jan 24 2017, 11:40.

Jan 18 2017

Adding pre-assembled terms for coupling matrices + detecting changes in…
0db649cf6d67
·richart on Jan 18 2017, 10:54.

Dec 7 2016

starting to modify the tests for the new API, + bug fixes on autos ans adding…
06e82afebd3a
·richart on Dec 7 2016, 13:55.

Dec 2 2016

Rewrote synchronizer interface (need testing)
cafceb59140e
·richart on Dec 2 2016, 17:27.

Jun 29 2016

New solvers in solid_mechanics_model
0afd2f20c3e2
·richart on Jun 29 2016, 02:45.

Apr 13 2016

Added tests and made them work for a model in static linear, dynmic implicit
54d48968a1b6
·richart on Apr 13 2016, 14:21.

Mar 17 2016

Correction due to ediff n in some files...
202c6ec62b8b
·richart on Mar 17 2016, 09:17.
Removing zombie files
0608fc9fe4a5
·richart on Mar 17 2016, 00:42.
Merge branch 'master' of gitolite-richart:akantu into dofs-separation-rewrote
171d1862ded1
·richart on Mar 17 2016, 00:39.

Mar 16 2016

Changes to make the first model solver test run
f4cdeb6af0c9
·richart on Mar 16 2016, 23:50.

Feb 16 2016

Connecting more pipes together: compiling simple case
8894eaae3ed0
·richart on Feb 16 2016, 18:45.

Feb 12 2016

added PBCs with PETSc
5a3286713343
·frerot on Feb 12 2016, 12:14.
Revert "put mumps output setup before mumps initialization"
0ba9472ac075
·frerot on Feb 12 2016, 09:36.

Feb 9 2016

put mumps output setup before mumps initialization
70fdbcffe749
·frerot on Feb 9 2016, 18:07.

Feb 8 2016

fixed compilation error when MPI not activated
ad071a900ebb
·frerot on Feb 8 2016, 10:23.

Feb 2 2016

Merge branch 'release'
03fe43e3763b
·richart on Feb 2 2016, 21:03.
solving cleaning of implicit parallel cases
8eb7d108be2c
·richart on Feb 2 2016, 20:58.
Merge branch 'master' into dofs-separation-rewrote
6cd48b3f4371
·richart on Feb 2 2016, 19:38.
bug fixes to make solver work for FE2 simulations
514a38ab99ef
·Aurelia Cuba Ramos on Feb 2 2016, 11:51.
fix for RVE simulations: splitting of communicator in the solver
6af73cc5d7a4
·Aurelia Cuba Ramos on Feb 2 2016, 09:57.

Feb 1 2016

conflicts resolved
b266e36a8204
·Aurelia Cuba Ramos on Feb 1 2016, 09:21.
modifications to use dummy_communicator for RVEs in FE2 simulations
3be907b09878
·Aurelia Cuba Ramos on Feb 1 2016, 08:57.

Jan 22 2016

updating headers
8b77901c9c9f
·richart on Jan 22 2016, 16:19.

Jan 21 2016

Removing warning with -Wall -Werror + reformating the fils went through
9c9b9a8e0e9f
·LSMS Tester / richart on Jan 21 2016, 01:02.
Removing warning with -Wall -Werror + reformating the fils went through
a1b3497b1275
·LSMS Tester / richart on Jan 21 2016, 00:10.

Jan 19 2016

Bug fixes: memory leaks and finalization
569aca0ad4eb
·richart on Jan 19 2016, 23:05.

Jan 15 2016

Updating the headers for the release 2.3
7dd9648d4655
·LSMS Tester / richart on Jan 15 2016, 17:03.

Jan 13 2016

Merge branch 'master' into release
74a41d6f0ef2
·richart on Jan 13 2016, 17:38.

Dec 8 2015

compilation with clang ok
273337d4079f
·anciaux on Dec 8 2015, 12:50.

Nov 16 2015

correct profile creation with pbc in parallel
0f184b143f5d
·kammer on Nov 16 2015, 12:23.

Oct 16 2015

Change residual in internal forces + added instantiation for Time step solver
1e72176f9e34
·richart on Oct 16 2015, 14:38.

Oct 8 2015

generic neighborhood class added
a0b28f5877ff
·Aurelia Cuba Ramos on Oct 8 2015, 17:51.

Oct 7 2015

Moving some more code for the solver implementations
1f6d3d2a449f
·richart on Oct 7 2015, 00:17.

Sep 21 2015

First step in the parallelism of the geometry
c4eea3cc3071
·Marco Vocialta on Sep 21 2015, 19:26.

Sep 17 2015

Advancing on the definition of the TimeStepSolver
8fcd629b2e35
·richart on Sep 17 2015, 12:59.

Sep 15 2015

Adding NoLionearSolver TimeStepSolver, adapting fem for the assembly of masses
8e5feed2a2e9
·richart on Sep 15 2015, 18:51.

Aug 21 2015

Merge branch 'master' into dofs-separation-rewrote
b214f10aa754
·richart on Aug 21 2015, 18:52.
Started changes in matrix instanciation
97be65b1e826
·richart on Aug 21 2015, 18:40.

Aug 18 2015

Merge branch 'master' into dofs-separation-rewrote
f43c94d839a1
·richart on Aug 18 2015, 15:52.
Begining of implementation of DOFManager as a central object for solver +…
128c0520c87c
·richart on Aug 18 2015, 15:43.
Made unordered_map a bit more generic with an autodetection in cmake
05df46a996de
·richart on Aug 18 2015, 00:27.

Aug 7 2015

make the init for the solver reentrant
21ce0527e9b2
·anciaux on Aug 7 2015, 14:40.

Aug 4 2015

Modification to make akantu compile with long int (64bit idx) Still has to…
4bee089d6542
·richart on Aug 4 2015, 23:24.

Jun 24 2015

Fix to allow Akantu use a version of Petsc compiled for C and bugfix on my last…
7cf43887b4af
·Marco Vocialta on Jun 24 2015, 17:49.

Jun 3 2015

Destroy properly SolverMumps
6c1f7eacac7b
·Clement Roux on Jun 3 2015, 11:52.

May 4 2015

bugs fixed in the finalization of the static solver for mumps
ed2494138899
·corrado on May 4 2015, 16:13.
bugs fixed in the management of mumps errors and warnings
49ea74fd0a70
·corrado on May 4 2015, 16:11.

Apr 30 2015

Merge branch 'master' of lsmssrv1.epfl.ch:akantu
f14f18e26084
·Marco Vocialta on Apr 30 2015, 13:57.
Improving performance with petsc in debug mode
a7db964b113d
·Marco Vocialta on Apr 30 2015, 13:57.
bug fix in the apply boundary function of the petsc matrix
ab4a38f1b0bf
·Aurelia Cuba Ramos on Apr 30 2015, 13:54.

Apr 28 2015

Merge branch 'master' of lsmssrv1.epfl.ch:akantu
d93e2d22375b
·Aurelia Cuba Ramos on Apr 28 2015, 10:08.
solver tests updated, corrections in cleanup of material_non_local
632341c2c02b
·Aurelia Cuba Ramos on Apr 28 2015, 10:06.

Apr 13 2015

Change to no get errors for MUMPS warnings
0d826477d0dd
·richart on Apr 13 2015, 18:31.
Change to no get errors for MUMPS warnings
221818ed5569
·richart on Apr 13 2015, 15:10.

Feb 5 2015

define matrix is positive definite in petsc solver
c7bdff3b2815
·Aurelia Cuba Ramos on Feb 5 2015, 14:50.

Dec 19 2014

Merge branch 'master' of gitolite-lsmssrv1:akantu
2ca90fe14425
·Aurelia Cuba Ramos on Dec 19 2014, 10:43.
restart solver options after 1st solving step
905173700add
·Aurelia Cuba Ramos on Dec 19 2014, 10:36.

Dec 16 2014

correction of python wrapper
2ec003c4fb7b
·richart on Dec 16 2014, 18:36.

Dec 9 2014

resolved conflict in CMakeLists of solver tests
bb6e56071c07
·Aurelia Cuba Ramos on Dec 9 2014, 21:33.
modifications in akantu to use PETSc
65095fda9af0
·Aurelia Cuba Ramos on Dec 9 2014, 21:26.
PETSc solver and tests completed
a51a521437e3
·Aurelia Cuba Ramos on Dec 9 2014, 21:17.

Nov 5 2014

Merge branch 'master' of lsmssrv1.epfl.ch:akantu
95998fd04b83
·richart on Nov 5 2014, 01:01.
Rewrote the package system adaptation of all other files
e852b7d54eae
·richart on Nov 5 2014, 00:56.

Nov 4 2014

bug fix: register petsc matrix and the solver to the static solver event…
af165d86177b
·Aurelia Cuba Ramos on Nov 4 2014, 19:35.
accessors added in dof synchronizer, modfied petsc matrix to be notified when…
345fed2d5661
·Aurelia Cuba Ramos on Nov 4 2014, 18:56.

Nov 3 2014

Merge branch 'master' of gitolite-lsmssrv1:akantu
07843319dbb7
·Aurelia Cuba Ramos on Nov 3 2014, 19:34.
added offset for matrix computations
d305e83ab1f7
·Aurelia Cuba Ramos on Nov 3 2014, 19:34.
compilation bug fixes
9c5bff6d3293
·richart on Nov 3 2014, 13:55.