Diffusion akantu (features/changes-to-address-joss-review) History

rAKA/python
features/changes-to…136fdff461b86e9533df368…

Nov 11 2019

Cleaning debug couts
136fdff461b8
·richart on Nov 11 2019, 16:28.

Nov 7 2019

adding the meshdatamaterialselector handling
1679e030bb0f
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
c4af0da6117d
·anciaux on Nov 7 2019, 22:16.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
1d436d1e0a06
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
18549d2da848
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
f4a623ac3799
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
33b2a21d75fa
·anciaux on Nov 6 2019, 14:40.

Oct 30 2019

Bug fix for cmake > 3.11
e3715c23639b
·richart on Oct 30 2019, 16:15.

Oct 28 2019

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f3d662810a7
·richart on Oct 28 2019, 21:26.
Make akantu compile again on ubuntu xenial
67bc28894cfb
·richart on Oct 28 2019, 21:24.

Oct 10 2019

fix bug on the group manager python interface
98e31aa37f35
·anciaux on Oct 10 2019, 16:27.

Sep 27 2019

dirty hack to allow to dump a numpy array
a7432c4bab43
·anciaux on Sep 27 2019, 21:49.
saving the test for large rotations
442a2f57fe23
·anciaux on Sep 27 2019, 21:46.
temporary fix to pass a numpy to be dumped
baac59a38a62
·anciaux on Sep 27 2019, 21:45.
adding a adddumpfieldexternal
aaddfc6e06ae
·anciaux on Sep 27 2019, 14:57.

Sep 17 2019

bug in the interface
c59021d18d8e
·richart on Sep 17 2019, 17:03.

Aug 14 2019

Modified pybind11 to work also with 2.3
8fb402aea0a1
·richart on Aug 14 2019, 15:33.

Jul 19 2019

backward compatibility for pybind11 interface
66e096390ab1
·richart on Jul 19 2019, 18:03.
Correcting some examples
b2a2f97d97ac
·richart on Jul 19 2019, 18:03.
arc lint --everything
fe2c711063a8
·richart on Jul 19 2019, 16:32.

Jul 16 2019

bug fix in the model interface pybind11
d4c15ff0af18
·richart on Jul 16 2019, 11:33.

Jul 4 2019

Allowing to call the solver with a different solver callback
64b062ea67f5
·richart on Jul 4 2019, 14:50.

Jun 16 2019

Bug fix on static patch tests
121f89dc006f
·richart on Jun 16 2019, 21:23.
Bug fix in the python patch tests
5adfe4547377
·richart on Jun 16 2019, 20:10.
Bug fixing in the python interface
1dd86a07d392
·richart on Jun 16 2019, 14:52.
Merge branch 'features/pybind11' of c4science:/diffusion/AKAPRIV/akantu-private…
59acc25aa216
·richart on Jun 16 2019, 12:50.

Jun 15 2019

Merge branch 'master' into features/pybind11
0e4984f5a64d
·richart on Jun 15 2019, 18:24.

Jun 14 2019

added the possibility to build dumper::Field in python
dacd1c6ce4d6
·anciaux on Jun 14 2019, 15:28.

Jun 12 2019

Fixing bugs in parallel:
788ec250fa23
·richart on Jun 12 2019, 18:29.

Jun 5 2019

Repairing some swig things
1308f870eb08
·richart on Jun 5 2019, 19:38.
Merge branch 'master' into features/petsc
69c3f4c90ff0
·richart on Jun 5 2019, 17:47.

Jun 2 2019

Bug fix in the MSH reader version 4
7a04471d3e4d
·richart on Jun 2 2019, 20:49.

May 14 2019

adding a few methods for solidmechanics model
46779f984fa4
·anciaux on May 14 2019, 12:34.

May 10 2019

heat transfer patch test working
0dda5dcc1039
·anciaux on May 10 2019, 10:44.

May 9 2019

adding the heat transfert interface
5f01385313a8
·anciaux on May 9 2019, 16:39.
revert the BC namespace
f26800db0de2
·anciaux on May 9 2019, 15:22.
sparse matrix example working in pybind
4cfbb587ed7d
·anciaux on May 9 2019, 14:55.
towards sparsematrix
576e37d3ad30
·anciaux on May 9 2019, 14:20.
removing swig
84d2362e4f31
·anciaux on May 9 2019, 13:15.
complement the python interface
4a76700356f7
·anciaux on May 9 2019, 12:17.

May 8 2019

bind node/element groups
a7017467bb54
·anciaux on May 8 2019, 16:25.
remove nonexisting call in the pybind interface
d8014c9dd01d
·anciaux on May 8 2019, 15:12.
Merge branch 'master' into features/pybind11
7e653f041bc2
·anciaux on May 8 2019, 13:11.
adding element group and prepare pytest
ec0ce126d3a6
·anciaux on May 8 2019, 13:07.

May 7 2019

finish binding of cohesive models
b0172f1e089c
·anciaux on May 7 2019, 17:59.
binding the solidmechanicsmodelcohesive
0ae7c837a8dd
·anciaux on May 7 2019, 17:42.

May 6 2019

working materials
6782b4c3d3bb
·anciaux on May 6 2019, 17:39.

May 3 2019

working bi-material example with custom material in pybind
da9d00771694
·anciaux on May 3 2019, 17:40.
splitting files for the parser
c3c554d272e9
·anciaux on May 3 2019, 14:40.
splitting the files
d5eb08f83156
·anciaux on May 3 2019, 14:22.
fix bi-material example for pybind
289aee5c10fd
·anciaux on May 3 2019, 10:00.

May 2 2019

correct the initialization problem with materials
1c41d1578cb8
·anciaux on May 2 2019, 17:19.

Apr 16 2019

still working on the materials for python
6e15f4e65858
·anciaux on Apr 16 2019, 16:08.

Apr 12 2019

started the dev of the materials in python
c2107819fe71
·anciaux on Apr 12 2019, 17:39.
tests good for array, vector and matrix
97c5fc33599c
·anciaux on Apr 12 2019, 17:07.
adding test and dynamic example now working
c2fdaea2317f
·anciaux on Apr 12 2019, 12:34.

Apr 9 2019

fix a compilation problem due to file removal
b56fbddcf7b1
·anciaux on Apr 9 2019, 13:45.
good first state for pybind
df0ac98c3b81
·anciaux on Apr 9 2019, 13:41.
added solidmechanics bcs mesh model
547d68723a68
·anciaux on Apr 9 2019, 11:38.

Mar 26 2019

modifying the swig temporarily to have access to aij sparse matrices
b879bd479ec6
·anciaux on Mar 26 2019, 23:27.

Mar 20 2019

setting rpath for python extension
ad8da63e2e3d
·frerot on Mar 20 2019, 14:25.

Feb 26 2019

exposing partitionate parameters in distribute
76e9be0a5b66
·richart on Feb 26 2019, 12:49.

Feb 6 2019

Correcting examples and tests
c263b07d61fc
·D197
·fouad / richart on Feb 6 2019, 15:33.

Dec 28 2018

adding bool as a mesh_data
7237f444b33e
·richart on Dec 28 2018, 14:54.

Dec 12 2018

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
e9aecedaa1d5
·richart on Dec 12 2018, 15:41.

Nov 6 2018

Bug fix in python interface
385484478fa9
·richart on Nov 6 2018, 20:23.
solved some swig issues
7e2cd66c9507
·richart on Nov 6 2018, 17:02.

Oct 31 2018

Bootstraping the pybind11 code
0cf2524f8f9e
·richart on Oct 31 2018, 10:30.

Oct 16 2018

Adding computeBarycenters to the python interface
33eaf7cb000e
·richart on Oct 16 2018, 18:16.

Oct 10 2018

Merge branch 'features/pbc'
0dc284119849
·richart on Oct 10 2018, 10:26.

Sep 25 2018

Adding the mesh nodal data to the python interface
7b78eda9f30a
·richart on Sep 25 2018, 17:39.

Aug 29 2018

Adding some functions in the python interface
71beddeb9549
·richart on Aug 29 2018, 14:08.

Aug 14 2018

modified fe_engine python interface
00b736ea3a6f
·richart on Aug 14 2018, 17:55.

May 30 2018

Removing warning while compiling mpi interface
c7ee273dd82c
·richart on May 30 2018, 14:40.

May 1 2018

added physical names selector to python interface
cf9971ddd98a
·frerot on May 1 2018, 15:50.
removed import mpi4py from python module
0d46473e9018
·frerot on May 1 2018, 15:50.

Apr 4 2018

spacial direction ?
8b22417fb5c7
·richart on Apr 4 2018, 17:07.
Adding a full blown object to treat bounding boxes
a6ae4099f295
·richart on Apr 4 2018, 17:07.

Mar 27 2018

Minor changes int the python insterface
2bbc30b8dd4c
·richart on Mar 27 2018, 17:02.
is_extrinic in python
2bcda32fdee4
·richart on Mar 27 2018, 15:23.

Mar 20 2018

give access to solve step of a given solver
6084ccd718c5
·anciaux on Mar 20 2018, 17:36.

Mar 11 2018

Cleaning swig warnings at compilation
15fbae074af8
·richart on Mar 11 2018, 19:01.

Mar 4 2018

Compilation warning with clang
2a7c8e69acb5
·richart on Mar 4 2018, 03:42.

Feb 27 2018

Correcting initialization of python patch tests
a8eb1c3c8963
·richart on Feb 27 2018, 12:32.

Feb 23 2018

correcting minor python stuff
29968496541f
·richart on Feb 23 2018, 14:59.

Feb 8 2018

python interface bug fix
7e77e91cafad
·anciaux on Feb 8 2018, 15:28.
python patch tests in good shape
40a4994dfcfa
·anciaux on Feb 8 2018, 11:38.

Feb 7 2018

extend heat transfer
711e09a09b34
·anciaux on Feb 7 2018, 19:25.
python unittest for patchtest
4cc88ef4c591
·anciaux on Feb 7 2018, 16:38.

Feb 6 2018

intFull in python common to all models
42ee76b26e41
·richart on Feb 6 2018, 14:32.

Feb 5 2018

Bug fix in python interface:
777e157a3f15
·richart on Feb 5 2018, 13:21.
Corrections for the python interface
4eda17d13739
·richart on Feb 5 2018, 00:08.

Feb 4 2018

Updating the swig code for cohesive structural and heat transfer models
0de4dd0d2bbd
·richart on Feb 4 2018, 15:31.
Making use of the preferred version for python in CMake files
192eeaff4257
·richart on Feb 4 2018, 15:30.

Feb 2 2018

almost there in the python interface
2a647d5399a0
·anciaux on Feb 2 2018, 17:37.
working newmark examples with python interface
e1ddf6ea33c0
·anciaux on Feb 2 2018, 16:52.
compiling python interface: runtime=getMass problem
bedf9bd900a9
·anciaux on Feb 2 2018, 15:56.

Feb 1 2018

python interface compiling: need to check compatibility with scripts
022b6ea9aedf
·anciaux on Feb 1 2018, 10:47.
include the python interface modifications: compiles again
4d83e6b07478
·anciaux on Feb 1 2018, 09:21.

Nov 8 2017

clang-tidy auto-fix second pass for using and auto + performance
98405b386e09
·richart on Nov 8 2017, 18:57.