Diffusion akantu (features/changes-to-address-joss-review) History

rAKA/src/common
features/changes-to…afa9cc913c79d901958698a…

Sep 4 2019

cleaning the code
863d3f407e40
·richart on Sep 4 2019, 17:41.

Aug 14 2019

adding types capabilities
534c6752bee0
·richart on Aug 14 2019, 18:20.

Jul 19 2019

arc lint --everything
fe2c711063a8
·richart on Jul 19 2019, 16:32.

Jul 17 2019

Bug fix with aka_array_tmpl due to compiler version
c3496bf61b8d
·richart / gallyamov on Jul 17 2019, 10:52.

Jul 3 2019

Fixed compilations of examples
8a9c0bc03921
·richart on Jul 3 2019, 10:42.

Jun 16 2019

Bug fix in non linear tests
9fdb8de9cf68
·richart on Jun 16 2019, 20:10.
Bug fix in Dumper shared_ptr changes
7d83cd218a34
·richart on Jun 16 2019, 16:15.

Jun 15 2019

Merge branch 'master' into features/pybind11
0e4984f5a64d
·richart on Jun 15 2019, 18:24.

Jun 12 2019

Fixing bugs in parallel:
788ec250fa23
·richart on Jun 12 2019, 18:29.
Compiling with clang with -fsanitize=memory
36cb05800fb2
·richart on Jun 12 2019, 18:28.

Jun 5 2019

Merge branch 'master' into features/petsc
69c3f4c90ff0
·richart on Jun 5 2019, 17:47.

May 31 2019

Few modifications
8a8cbaa53817
·richart on May 31 2019, 17:33.

May 9 2019

removing swig
84d2362e4f31
·anciaux on May 9 2019, 13:15.

May 8 2019

Merge branch 'master' into features/pybind11
7e653f041bc2
·anciaux on May 8 2019, 13:11.

May 7 2019

improved error message
211d3896d5bc
·anciaux on May 7 2019, 17:43.

Apr 23 2019

Correction in transform iterators
7c6724f81ef6
·richart on Apr 23 2019, 16:47.

Apr 5 2019

dynamic_cast -> as_type
1e093d42f748
·richart on Apr 5 2019, 15:21.

Mar 27 2019

Removed small tweaks made it more stable by copying the profiles
de3632b9a117
·richart on Mar 27 2019, 16:29.
First correct solution obtained with PETSc
0183db140277
·richart on Mar 27 2019, 15:52.

Mar 13 2019

refactoring some assembly code
82efd2d855ec
·richart on Mar 13 2019, 12:50.

Mar 7 2019

This seams to work to assemble with multiple dofs and in parallel (needs a bit…
2ff5e44cc57d
·richart on Mar 7 2019, 16:14.

Feb 26 2019

Adding modules for debug
89582c779053
·richart on Feb 26 2019, 12:48.
Refactoring code between dof_managers
0caf92148c1b
·richart on Feb 26 2019, 12:48.

Feb 8 2019

Bug fixing some tests + sanitizing them
f8a03d4d85b9
·richart on Feb 8 2019, 10:55.
Swig protection
87e540f9faa7
·richart on Feb 8 2019, 10:15.

Feb 5 2019

Adding iterator_traits to column_iterator
8e18d660550e
·richart on Feb 5 2019, 11:10.
Promoting the arange to a forward iterator
3f02cd677bf3
·richart on Feb 5 2019, 11:09.

Jan 30 2019

namespacing the type traits
449964d7deb7
·richart on Jan 30 2019, 11:11.
zip cat iterator
5adae7dba462
·richart on Jan 30 2019, 03:39.

Jan 29 2019

Bug fix in column iterator and some cleaning
4ffeb75ecfda
·richart on Jan 29 2019, 23:19.
Adding filtered iterator and zip iterator random_access possibility
3ceff0e60343
·richart on Jan 29 2019, 23:19.

Jan 22 2019

Adding column iterator on Matrix
079fccbb5a42
·richart on Jan 22 2019, 14:06.

Jan 2 2019

PETSc compiles adding SolverVector
05a352d13d99
·richart on Jan 2 2019, 17:42.

Dec 30 2018

Bug fixing some tests + sanitizing them
bb1dc4591df5
·richart on Dec 30 2018, 15:53.
Scoping more enums
ef8b48beb2fc
·richart on Dec 30 2018, 15:40.

Dec 28 2018

Scoping some enums
08b1837389c4
·richart on Dec 28 2018, 16:03.

Nov 9 2018

increasing compatibility of iterators with stl iterators
74848b91ed80
·richart on Nov 9 2018, 15:58.

Nov 6 2018

solved some swig issues
7e2cd66c9507
·richart on Nov 6 2018, 17:02.
modernizing material macro
d02061c6e2d6
·richart on Nov 6 2018, 17:02.

Nov 5 2018

Missing file
1422395dd95b
·richart on Nov 5 2018, 10:31.

Nov 2 2018

making firstType lastType deprecated + bug fix in internalfields
052424c24651
·richart on Nov 2 2018, 17:06.

Oct 31 2018

bug fixes in 1d
41a834663730
·richart on Oct 31 2018, 10:32.
Bug fix in array resize
04f6203383ea
·richart on Oct 31 2018, 10:31.

Oct 16 2018

Adding computeBarycenters to the python interface
33eaf7cb000e
·richart on Oct 16 2018, 18:16.

Oct 10 2018

Merge branch 'features/pbc'
0dc284119849
·richart on Oct 10 2018, 10:26.

Oct 9 2018

correcting mesh_io_msh nodedata
e129d486a1a0
·richart on Oct 9 2018, 12:50.

Sep 12 2018

Adding transform adaptor and nodedata in mesh data
023a4b630b0e
·richart on Sep 12 2018, 13:22.

Sep 5 2018

make periodic debugging
8ec3c922e7ee
·richart on Sep 5 2018, 13:49.
Making compilation work with gcc >= 8
a835a3214c48
·richart on Sep 5 2018, 13:48.

Aug 10 2018

Few compilation fixes for gcc>=8
ed8607e8f267
·richart on Aug 10 2018, 15:30.

Jul 19 2018

commit to push before vacations: this version is currently broken
327aad04af0a
·richart on Jul 19 2018, 16:57.

Jun 19 2018

Rewrote the equation numbers to work properly with pbc
d06c0a0487e5
·richart / gallyamov on Jun 19 2018, 12:30.

Jun 15 2018

Pre-working stage for PBC:
d4f0b6028779
·richart on Jun 15 2018, 11:02.

May 30 2018

Multiple changes in order to start implementation of periodicity
033a8225e32a
·richart on May 30 2018, 14:47.

Apr 17 2018

adding debug info in makePeriodic
ba0d478cf0b3
·richart on Apr 17 2018, 17:53.

Apr 4 2018

NodeType becomes NodeFlags + node_prank
7d530d027fd0
·richart on Apr 4 2018, 17:53.
order correction in tensors
b9f8cbc2348a
·richart on Apr 4 2018, 17:10.
adding a mesh makePeriodic function
ba18e5860efa
·richart on Apr 4 2018, 17:08.
Adding a full blown object to treat bounding boxes
a6ae4099f295
·richart on Apr 4 2018, 17:07.
Adding functionality for periodicity in the mesh
11d8a4d1b2c5
·richart on Apr 4 2018, 17:05.

Mar 15 2018

cleaning the code
e28e345c933b
·richart on Mar 15 2018, 00:26.

Mar 11 2018

Bug fix for cohesive element in sequential
6213adec4933
·richart on Mar 11 2018, 21:19.
Fixing bugs introduced will bug fixing cohesive elements in parallel
1b065daef62a
·richart on Mar 11 2018, 18:34.
Typo in a node type
f0e158294f0f
·richart on Mar 11 2018, 04:08.

Mar 10 2018

Unitialized memory bug
3a75fa285a83
·richart on Mar 10 2018, 22:28.

Mar 8 2018

Adding operator distance in vector iterator
a3cd85da9cd9
·richart on Mar 8 2018, 10:12.

Mar 6 2018

adding iterator in Vector
cf641f3e110a
·richart on Mar 6 2018, 21:08.

Mar 5 2018

Correcting some bugs in determination of node global ids
51796baa5306
·richart on Mar 5 2018, 04:09.

Mar 2 2018

cleaning the test/examples for heat transfer
f07b5c55ab2d
·anciaux on Mar 2 2018, 12:29.

Feb 26 2018

Correcting test in parallel for solid mechanics model
2a44c9045437
·richart on Feb 26 2018, 01:37.

Feb 24 2018

Rewrote headers of tests
847ef2e1583c
·richart on Feb 24 2018, 22:37.

Feb 23 2018

Rewrote the headers of the files in src
2d7e93b72235
·richart on Feb 23 2018, 22:03.
Linted everything 'arc --lint --erverything'
80101ddd6e28
·richart on Feb 23 2018, 15:42.
correcting minor python stuff
29968496541f
·richart on Feb 23 2018, 14:59.

Feb 20 2018

No harsh termination, only exceptions thrown
7064d0e0638c
·richart on Feb 20 2018, 15:34.
Merge branch 'features/dofs-separation-rewrote' of c4science…
642251769e00
·richart on Feb 20 2018, 11:29.
correcting parallel cohesive element, still not working state
2462423f9d19
·richart on Feb 20 2018, 02:18.

Feb 19 2018

made block argument constant
cd565fe490da
·frerot on Feb 19 2018, 11:31.

Feb 5 2018

Corrections for the python interface
4eda17d13739
·richart on Feb 5 2018, 00:08.

Feb 2 2018

sanity checks in make_view
dcc5e7bbbfe8
·richart on Feb 2 2018, 16:31.

Feb 1 2018

python interface compiling: need to check compatibility with scripts
022b6ea9aedf
·anciaux on Feb 1 2018, 10:47.
include the python interface modifications: compiles again
4d83e6b07478
·anciaux on Feb 1 2018, 09:21.

Jan 31 2018

Merge branch 'features/dofs-separation-rewrote' of c4science…
47f5c259932b
·richart on Jan 31 2018, 18:24.
Bug fix in heat transfer
720f6bbe52b9
·richart on Jan 31 2018, 17:26.
making embedded compile + remove pollution of K symbol with CGAL
d2eb26203eae
·frerot on Jan 31 2018, 16:30.
some bug fix in heat transfer model
866bdf7258f0
·richart on Jan 31 2018, 00:59.

Jan 29 2018

Adding Range to be able to zip iterators
e0c8291e366e
·richart on Jan 29 2018, 00:06.

Jan 26 2018

testing const correctness on array
f3307a9f5722
·richart on Jan 26 2018, 16:51.

Jan 25 2018

Bug fix to avoid to modify const arrays with no compilation errors
7119a77a37b4
·richart on Jan 25 2018, 01:38.
Removing come 0s in the version
3065eaddd53b
·richart on Jan 25 2018, 00:13.

Jan 16 2018

Passing compilation with intel compiler
dbab3a696525
·richart on Jan 16 2018, 20:09.

Jan 12 2018

Adapting the heat transfer model to make it compile
03de87ebe97e
·richart on Jan 12 2018, 14:04.

Jan 10 2018

Preparing gtest cohesive element tests
a89df6d30a92
·richart on Jan 10 2018, 15:24.

Dec 28 2017

Test fe engine precompute working
ce3fb8cc6773
·richart on Dec 28 2017, 00:24.

Dec 22 2017

Merge branch 'features/dofs-separation-rewrote' of c4science…
e5198aa853c4
·richart on Dec 22 2017, 03:20.
Added tests for precomputation of finite element engine
469aa17f263e
·richart on Dec 22 2017, 03:14.

Dec 21 2017

Some minor changes to help to compile
7bd4b48b1a38
·richart on Dec 21 2017, 04:19.

Dec 19 2017

fixed all compile errors on ShapeStructural
6ea77414b2e9
·frerot on Dec 19 2017, 17:42.

Dec 18 2017

Adaptation to be able to compile with gcc 5
6af81b9fd766
·richart on Dec 18 2017, 15:59.
Changed the way cohesive element are initialized
86e65b53f22d
·richart on Dec 18 2017, 02:11.