Diffusion akantu (features/solver-rewrite) History

solver-rewrite

Oct 22 2024

clean the enums for nls
9d3ef4b4bb0b
·anciaux on Oct 22 2024, 17:29.
cleaning code for petsc nls
b0fd345654b6
·anciaux on Oct 22 2024, 16:54.
working petsc nls
19ae456df4ad
·anciaux on Oct 22 2024, 16:34.
alow to restore solution state in model for petsc nls
f13c2d844057
·anciaux on Oct 22 2024, 16:33.
fix init bug in sparse Petsc matrix
c34d4e7e79bd
·anciaux on Oct 22 2024, 16:32.
modernize code to c++-17
f9194dc804a0
·anciaux on Oct 22 2024, 16:32.

Oct 21 2024

still try to debug the nsl solver
6f86cbde5caf
·anciaux on Oct 21 2024, 13:36.

Oct 20 2024

c++ 17 style
b25081088911
·anciaux on Oct 20 2024, 22:47.
remove the useless callback and rearrange nls
c2e0e6c172ab
·anciaux on Oct 20 2024, 22:46.
print functions for sparse matrices/vectors
464d52ad3a03
·anciaux on Oct 20 2024, 22:45.

Oct 19 2024

comment for understanding
9d9423aa4498
·anciaux on Oct 19 2024, 12:02.
start testing the petsc SNES
b7f170e9a1a4
·anciaux on Oct 19 2024, 09:31.

Oct 16 2024

do not reset options to avoid cancelling options passed at command line
70cf2b20c693
·anciaux on Oct 16 2024, 13:59.
debug save of matrix for debug purpose commented
8e9e51798988
·anciaux on Oct 16 2024, 12:24.
fix bug solve phase field problem on a test
b76f74be78a2
·anciaux on Oct 16 2024, 12:24.
auto range loop c++-17
17349552d7a6
·anciaux on Oct 16 2024, 12:22.

Oct 15 2024

c++ range loop
d82f7ebeaf2a
·anciaux on Oct 15 2024, 16:20.
allows solver_options in initFull
ad98b01677a5
·anciaux on Oct 15 2024, 16:17.

Oct 11 2024

do not pass blocked dofs when solving the lumped system: unnecessary
9844e2ad92ca
·anciaux on Oct 11 2024, 17:32.
renaming back to SolverVector
d2a7181e2483
·anciaux on Oct 11 2024, 16:58.
use the scaling for solving lumped with petsc
612a9b697cb5
·anciaux on Oct 11 2024, 11:18.
enable solvervector resize and update of petsc IS from dofmanager
d5ce859b3064
·anciaux on Oct 11 2024, 07:20.
remove useless member of dofdata
3231c47bc0e8
·anciaux on Oct 11 2024, 07:20.
line formating
a8d44609d546
·anciaux on Oct 11 2024, 07:19.
remove duplicate member in daugther class
a3d7229f26f4
·anciaux on Oct 11 2024, 07:18.

Oct 8 2024

fix multi material test: matrix profile not fixed
cd864419c922
·anciaux on Oct 8 2024, 18:50.
working solverlumped with petsc dof_manager
4603364dc65f
·anciaux on Oct 8 2024, 18:24.

Oct 5 2024

adding a version safer but with a copy
70dc17ecaa1b
·anciaux on Oct 5 2024, 23:05.
prevent petsc to finalize mpi (as mpi4py may have done it already)
c0db265d35d8
·anciaux on Oct 5 2024, 16:36.
cleaning
c5d3e654a5d8
·anciaux on Oct 5 2024, 11:52.
saving state
873a7a2dd1d1
·anciaux on Oct 5 2024, 11:04.

Oct 4 2024

cleaning
237f49d247c0
·anciaux on Oct 4 2024, 17:33.
cleaning
e4b06fa91110
·anciaux on Oct 4 2024, 15:43.
error handler for PETSc generates nice Akantu exceptions
63e3229da822
·anciaux on Oct 4 2024, 15:41.
updateinternal called from the parser
408382e66dc4
·anciaux on Oct 4 2024, 15:39.

Oct 2 2024

set default solver in model options
ab7c9d7adaae
·anciaux on Oct 2 2024, 18:28.
set package
5cfc6d90c229
·anciaux on Oct 2 2024, 16:51.
protect mumps for compilation
9eef1190ce9f
·anciaux on Oct 2 2024, 16:46.

Oct 1 2024

protect code for when petsc not activated
434e4d6658b8
·anciaux on Oct 1 2024, 23:55.
fix bug at destruction of dof_manager
fd93c90db44f
·anciaux on Oct 1 2024, 22:36.
fix petsc for lumped solver type
4973754bc60a
·anciaux on Oct 1 2024, 22:08.

Sep 30 2024

passing correctly the options to petsc
003a4c85b7d4
·anciaux on Sep 30 2024, 10:10.

Sep 26 2024

new set func for parameters: std::any
e1c6b4798fa2
·anciaux on Sep 26 2024, 17:50.

Sep 25 2024

Merge branch 'master' into features/solver-rewrite
ee8fd0f901de
·anciaux on Sep 25 2024, 13:25.
broken
fa11b9853369
·anciaux on Sep 25 2024, 13:24.
cleaning debug output to file
f7242e84236f
·anciaux on Sep 25 2024, 08:16.
cleaning message
4fb986f40817
·anciaux on Sep 25 2024, 08:14.
cleaning stdout messages
dde89acc6be6
·anciaux on Sep 25 2024, 08:03.
unregister dofmanager from mesh: allow multiple dofmanager creation
01c8bcfe7428
·anciaux on Sep 25 2024, 07:48.
fixing dofmanagerpetsc instantiation
0cd787eb1bf6
·anciaux on Sep 25 2024, 07:48.

Sep 23 2024

advance in fixing petsc solver
9bd992624315
·anciaux on Sep 23 2024, 18:23.
transition to use akantu newton raphson with petsc
6173df8a4138
·anciaux on Sep 23 2024, 17:08.

Jun 6 2024

reshape parameters for petsc solvers
ad61a98e3084
·anciaux on Jun 6 2024, 19:18.

Jun 5 2024

adding option to use petsc solver
bfbfc54a0eaa
·anciaux on Jun 5 2024, 19:36.

May 24 2024

add the possibility to choose the sparse solver
25f8fa979320
·anciaux on May 24 2024, 08:55.

May 21 2024

cleaning
6d1662c3fd84
·anciaux on May 21 2024, 17:02.
typo
a919841507b2
·anciaux on May 21 2024, 17:02.
sparse solver petsc with a test (in sequential so far)
c41f39389c1c
·anciaux on May 21 2024, 14:19.

May 17 2024

optimize the blocked dofs treatment
e1ddd707af55
·anciaux on May 17 2024, 11:24.
fix application of blocked dofs
6eafdcc51f68
·anciaux on May 17 2024, 08:57.

Apr 5 2024

Adding const operator for apple-clang libc sort
7e3281535860
·richart on Apr 5 2024, 13:10.

Mar 26 2024

adding an interpolate version for all elementtype
e6255807869c
·anciaux on Mar 26 2024, 10:57.
Merge branch 'features/solver-rewrite' of gitlab.com:akantu/akantu into…
7b38021156ef
·anciaux on Mar 26 2024, 08:37.

Mar 25 2024

Merge branch 'master' into features/solver-rewrite
397dd1ff927a
·anciaux on Mar 25 2024, 21:40.
saving the change of interface
d31eb97ffe94
·anciaux on Mar 25 2024, 08:45.

Mar 22 2024

Changing size of empty_filter to get an allocation
2ed2b5f2e9c1
·branch: bugfixes/empty_filter_does_not_work_in_python
·richart on Mar 22 2024, 11:06.

Mar 12 2024

Merge branch 'master' into features/solver-rewrite
4ae6c59fa72d
·anciaux on Mar 12 2024, 10:33.

Mar 5 2024

Removing dead code
9b6bf9319719
·richart on Mar 5 2024, 19:37.

Feb 27 2024

fix compilation issues
bb626ad52752
·anciaux on Feb 27 2024, 11:30.
Merge branch 'master' into features/solver-rewrite
9c7d441921d8
·anciaux on Feb 27 2024, 09:54.
Merge branch 'master' into features/solver-rewrite
e0d3caf99a5b
·anciaux on Feb 27 2024, 09:48.

Dec 14 2023

adding a test to expose field and variational formulation ideas
2704744b3851
·anciaux on Dec 14 2023, 09:14.

Dec 13 2023

Adding CI on macos
5d2ca6c2706c
·richart / anciaux on Dec 13 2023, 15:50.

Dec 12 2023

modify tests
9a9c100c6b8a
·anciaux on Dec 12 2023, 14:02.
Improving the documentation according to the JOSS review
571699bcd9af
·richart on Dec 12 2023, 08:47.
renaming sparse solver and ready for questions
67a40dcbc411
·anciaux on Dec 12 2023, 06:32.

Dec 8 2023

nonlinearsolver: regroup newtonraphson and linear
67ee3c8f5e95
·anciaux on Dec 8 2023, 15:50.

Nov 30 2023

blocked dofs to dof_manager and mother class dof_manager in solvers
5b6580801b90
·anciaux on Nov 30 2023, 09:43.

Nov 23 2023

A not initialized in material_cohesive
9f4afd25dd16
·richart on Nov 23 2023, 19:13.
Bug fix in the assembly of stiffness matrix for cohesive elements
e3dd893dace5
·richart on Nov 23 2023, 19:10.

Sep 28 2023

More dumper aliases
f45a61a0abfe
·richart on Sep 28 2023, 21:54.
Merge branch 'features/changes-to-address-joss-review' of gitlab.com…
96c4bcb7ed57
·richart on Sep 28 2023, 20:03.
Adding aliasses names for dumpers
8524c2299432
·richart on Sep 28 2023, 20:02.
fix conflict
34e4ba79a439
·saduruss on Sep 28 2023, 16:31.
phase-field c++ example
58cff193772f
·saduruss on Sep 28 2023, 16:29.
Correcting nammings and compilation error
bef9a046a233
·richart on Sep 28 2023, 15:59.

Sep 27 2023

Merge remote-tracking branch 'origin/master' into features/changes-to-address…
d6dc8dd6c426
·richart on Sep 27 2023, 17:01.

Sep 14 2023

Missing changes in damage non local
73d9497cc7ba
·richart on Sep 14 2023, 21:56.
Bug fix in the constructor order
d96fd9e6de8f
·richart on Sep 14 2023, 20:39.
Switching to shared_ptr to correct undefined behaviors in the the python…
7cf2965a2846
·richart on Sep 14 2023, 19:25.
Renaming compilation profile
312a347ad723
·richart on Sep 14 2023, 19:17.

Sep 13 2023

Missing python interfaces [still a bug with internals in python]
67530890544a
·richart on Sep 13 2023, 20:35.

Sep 12 2023

Bug fix in the coupler interface
c8e866554c97
·richart on Sep 12 2023, 13:21.
Merge branch 'master' into features/make_multiple_materials_independant_solid_m…
254edd750e3a
·richart on Sep 12 2023, 09:01.

Sep 8 2023

Correcting problems with math_jax3 plus minor fixes
f26c9b7daf8b
·richart / Nicolas Richart on Sep 8 2023, 09:31.

Sep 6 2023

More bug introduced during Eigenification
4d8f88a27aa2
·branch: bugfixes/contact_mechanics_model
·Nicolas Richart on Sep 6 2023, 01:02.

Sep 4 2023

Transpose wrongly placed
4abeadecb292
·Nicolas Richart on Sep 4 2023, 16:15.
Exanding coupler interface
d8a7c9ab4052
·Nicolas Richart on Sep 4 2023, 15:51.
bug fix in group append
42a18f9a5554
·Nicolas Richart on Sep 4 2023, 15:50.

Aug 2 2023

Merge branch 'master' into features/make_multiple_materials_independant_solid_m…
5b14b292ffd6
·Nicolas Richart on Aug 2 2023, 12:25.

rAKA/srcfeatures/solver-rewrite

Oct 22 2024

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rAKA/src
features/solver-rewrite