Phriction Projects Wikis Bioimaging And Optics Platform Image Processing ImageJ/Fiji ijab-BIOP SIM/STORM Tools ActionBar History Version 4 vs 6
Version 4 vs 6
Version 4 vs 6
Edits
Edits
- Edit by oburri, Version 6
- Aug 29 2018 09:56
- Edit by romainGuiet, Version 4
- Jan 24 2018 08:02
Edit Older Version 4... | Edit Current Version 6... |
Content Changes
Content Changes
= DESCRIPTION =
This ActionBar enables the registration of SIM/STORM images (Or any kind of imaging modality where identical bead images can be acquired.
Please see the documentation in the publication
https://www.ncbi.nlm.nih.gov/pubmed/28924661
= INSTALLATION =
== Dependencies ==
This plugin depends from multiple packages
- ThunderSTORM (If you want to use the shortcuts provided, optional) https://zitmen.github.io/thunderstorm/
- ActionBar (From the IBMP-CNRS Update Site) http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start
- The PTBIOP Update site
== Getting the tool ==
The file you need to download is [[https://c4science.ch/source/ijab-sim-storm-tools/browse/master/BIOP_SIM_STORM_Tools.ijm | BIOP_SIM_STORM_Tools.ijm]] from our GIT Repository
The documentation is also downloadable [[https://c4science.ch/source/ijab-sim-storm-tools/browse/master/SIM%20STORM%20Registration%20Protocol.pdf | As a PDF File]]
== Copy this file to your Fiji installation ==
under `plugins > ActionBar`
eg. `C:\Fiji\plugins\ActionBar\BIOP_SIM_STORM_Tools.ijm`
After restarting Fiji, you will find it under Plugins > ActionBar.
= DESCRIPTION =
This ActionBar enables the registration of SIM/STORM images (Or any kind of imaging modality where identical bead images can be acquired.
Please see the documentation in the publication
https://www.ncbi.nlm.nih.gov/pubmed/28924661
= INSTALLATION =
== Dependencies ==
This plugin depends from multiple packages
- ThunderSTORM (If you want to use the shortcuts provided, optional) https://zitmen.github.io/thunderstorm/
- ActionBar (From the IBMP-CNRS Update Site) http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start
- The PTBIOP Update site
== Getting the tool ==
The file and documentation are downloadable from [[https://doi.org/10.5281/zenodo.1405365 | From Zenodo]]
There is also a [[https://doi.org/10.5281/zenodo.1036658 | Demo Dataset]]
==Unzip the file into your Fiji Plugins folder ==
it should then be inder `Plugins > ActionBar > SIM-STORM`
after you restart Fiji.
= DESCRIPTION =
This ActionBar enables the registration of SIM/STORM images (Or any kind of imaging modality where identical bead images can be acquired.
Please see the documentation in the publication
https://www.ncbi.nlm.nih.gov/pubmed/28924661
= INSTALLATION =
== Dependencies ==
This plugin depends from multiple packages
- ThunderSTORM (If you want to use the shortcuts provided, optional) https://zitmen.github.io/thunderstorm/
- ActionBar (From the IBMP-CNRS Update Site) http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start
- The PTBIOP Update site
== Getting the tool ==
The file you need to download is [[https://c4science.ch/source/ijab-sim-storm-tools/browse/master/BIOP_SIM_STORM_Tools.ijm | BIOP_SIM_STORM_Tools.ijm]] from our GIT Repositoryand documentation are downloadable from [[https://doi.org/10.5281/zenodo.1405365 | From Zenodo]]
The documentation is also downloadable [[https://c4science.ch/source/ijab-sim-storm-tools/browse/master/SIM%20STORM%20Registration%20Protocol.pdf | As a PDF Filere is also a [[https://doi.org/10.5281/zenodo.1036658 | Demo Dataset]]
== Copy this==Unzip the file into your Fiji installation ==Plugins folder ==
under `plugins > ActionBar`
eg. `C:\Fiji\pit should then be inder `Plugins\ > ActionBar\BIOP_SIM_ > SIM-STORM_Tools.ijm``
After restarting Fiji,after you will find it under Plugins > ActionBarrestart Fiji.
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