Diffusion BIOP Run Macro (master) History

History
master4d0f70d420110c8cb7b8419…

May 4 2016

POM: remove timezones
4d0f70d42011
·Curtis Rueden on May 4 2016, 20:23.

Apr 20 2016

POM: use imagej.net URLs for all developers
e6a575224508
·Curtis Rueden on Apr 20 2016, 19:01.
POM: remove developer email addresses
a9e75dc97a21
·Curtis Rueden on Apr 20 2016, 18:59.

Dec 24 2015

POM: tidy up order of configuration blocks
ae38bfc1a052
·Curtis Rueden on Dec 24 2015, 04:27.
POM: update developers and contributors
d4a2f12857d8
·Curtis Rueden on Dec 24 2015, 04:27.

Oct 17 2015

Bump to next development cycle
81d07d20dad5
·Curtis Rueden on Oct 17 2015, 04:22.
Bump pom-fiji parent to 16.0.0
b6a5caccf257
·Curtis Rueden on Oct 17 2015, 04:20.

Sep 21 2015

Merge pull request #44 from chalkie666/fixIssue33
9fbe5594f6cb
·dan white on Sep 21 2015, 11:20.

Sep 19 2015

Make Coloc_Job_Name value result
ca6cb3e65fa9
·daniel j. white on Sep 19 2015, 12:36.

Sep 18 2015

Merge pull request #43 from chalkie666/fixIssue33
9db515eff9b3
·Tom Kazimiers on Sep 18 2015, 15:36.

Sep 2 2015

Bump to next development cycle
c4c4038bcdba
·Mark Hiner on Sep 2 2015, 19:12.
Bump parent to pom-fiji 15.1.0
4ca9d1838ef9
·Mark Hiner on Sep 2 2015, 19:10.
Results: Set jobName result value to Done instead of -1
2094186244da
·daniel j. white on Sep 2 2015, 15:31.
Results: Allow ResultsHandlers to get mask type and ID
0d148e5e355e
·daniel j. white on Sep 2 2015, 15:31.
Results: Fix typo in DataContainer
779cb1c69fa7
·daniel j. white on Sep 2 2015, 15:24.
Results: issue #33, channel name in image name for results.
897fd4b354f2
·daniel j. white on Sep 2 2015, 15:21.

Aug 31 2015

Merge branch 'MandersRealNoisyTest'
2271115b0bc1
·Curtis Rueden on Aug 31 2015, 21:11.
Revert "Merge branch 'manders-real-noisy-test'"
3dfb0a22c55d
·Curtis Rueden on Aug 31 2015, 21:07.

Aug 30 2015

Use Eclipse to find and add missing @Override annotations
a06fdea26f35
·daniel j. white on Aug 30 2015, 16:05.
change IJ.write to IJ.log
7f32ca9bdf50
·daniel j. white on Aug 30 2015, 16:05.
add project url and issue management system info
d9be7873e104
·daniel j. white on Aug 30 2015, 16:05.
Fix comments and comments formatting and names
79a72adc5c33
·daniel j. white on Aug 30 2015, 16:05.
remove unused imports
dcec3ea94c80
·daniel j. white on Aug 30 2015, 16:05.
A second unit test for Manders' coefficients
5610ed689846
·daniel j. white on Aug 30 2015, 16:04.
PDFWriter file name: uses maskHash so remove "mask"
f83fb54e445e
·daniel j. white on Aug 30 2015, 16:04.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
write coloc job name at top of PDF output
d2734712c33c
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
Remove old stale comments and fix comment typo
83bee3b0d009
·daniel j. white on Aug 30 2015, 15:49.
use same job name in all ResultHandlers
a7dafc9e9781
·daniel j. white on Aug 30 2015, 15:49.
Add main class to make development easier
43e1393cf017
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.
fix macro recordability - remove " " from gd label
c4ef70887e3e
·daniel j. white on Aug 30 2015, 15:49.
input image stats/params/vals now in DataContainer
64cbd07c0f3a
·daniel j. white on Aug 30 2015, 15:49.
fix duplicated results writing into IJ.log
2d6ecf0b0f6e
·daniel j. white on Aug 30 2015, 15:48.
Tidy up comments and fix to be more specific
d84174a27a50
·daniel j. white on Aug 30 2015, 15:36.
UI: make regression type selection work with macros
dc9deb654875
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:36.
Create README.md
735f17f686a4
·dan white / daniel j. white on Aug 30 2015, 15:36.
explanation comments, variables fraction coloc
5ee6f4319d10
·daniel j. white on Aug 30 2015, 15:36.
fix typo: Real nouns have capitals
82647666855b
·daniel j. white on Aug 30 2015, 15:30.
Rename objects and fix comments and javadoc
d2ea4bfadbed
·daniel j. white on Aug 30 2015, 15:29.
Fix Manders' split coefficients wrong channel check bug
e4a3a6ec36e0
·daniel j. white on Aug 30 2015, 15:28.

Aug 27 2015

Merge pull request #42 from gitter-badger/gitter-badge
048078334479
·Curtis Rueden on Aug 27 2015, 23:23.
Added Gitter badge
3d98b03f7b86
·The Gitter Badger on Aug 27 2015, 22:35.
Merge branch 'manders-real-noisy-test'
3b80a77c89ae
·Curtis Rueden on Aug 27 2015, 18:55.
fix up comments
b37c6f0a0bbe
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
remove unused imports
06b4165f73fd
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
use Views.iterable instead of a dangerous cast
349b86ca643a
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
fix manual thresholds, output values, to known true
c4efa7d94410
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
fix generic type problems in Manders unit test.
ed58a1678f37
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
real noisy Manders test - progress, but still broken
217134649dd2
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
fails to load mask image as a mask of type Cursor
af35cf6f505f
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
beginnings of a second unit test for Manders' coefficients
9ab837c58ede
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
explanation comments, variables fraction coloc
9c4ba7d4d5c6
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
fix typo real nouns have capitals
265f6740e35a
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
fix bug in Manders' coeff pixel selection logic
6e5c528cd7b0
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:36.
Add mask image for testing colocsample1b images
9dc4bf766599
·daniel j. white / Curtis Rueden on Aug 27 2015, 18:34.

Aug 5 2015

Merge pull request #22 from fiji/dan-jobname
6b6a330fb2d7
·dan white on Aug 5 2015, 09:54.
Add main class to make development easier
98268b1c4161
·Tom Kazimiers on Aug 5 2015, 03:04.
PDFWriter file name, uses maskHash,, remove "mask"
fb1a9314b095
·daniel j. white / Tom Kazimiers on Aug 5 2015, 00:00.
use a job name with the mask hash for results naming
c438306c462d
·daniel j. white / Tom Kazimiers on Aug 5 2015, 00:00.

Aug 4 2015

write coloc job name at tope of PDF output
eb6148cb8375
·daniel j. white / Tom Kazimiers on Aug 4 2015, 16:00.
Coloc jobName; a ValueResult for use in ResultHandler implementations
75184e88cd6c
·daniel j. white / Tom Kazimiers on Aug 4 2015, 15:57.
remove depreciated comments and fix comment typo
f1ecf81a6791
·daniel j. white / Tom Kazimiers on Aug 4 2015, 15:52.
use same job name in all ResultHandlers
e833597d7d8a
·daniel j. white / Tom Kazimiers on Aug 4 2015, 15:52.

Aug 3 2015

Merge pull request #19 from fiji/dan-general-changes
2795ddad772b
·dan white on Aug 3 2015, 17:27.
UI: make regression type selection work with macros
8c93d8ff1e75
·Tom Kazimiers on Aug 3 2015, 17:23.
Fix code style of readme
fee8ff8ca252
·Tom Kazimiers on Aug 3 2015, 17:11.
change autothreshold test to y-intercept:ch2Mean
492b846c032b
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:07.
fix macro recordability - remove " " from gd label
6318f0f29ba6
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:07.
update years active in copyright notice
2c6f525f9ddf
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:07.
input image stats/params/vals now in DataContainer
4cfc8861f05f
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:07.
fix duplicated results writing in to IJ/log
a493b2c88a14
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:07.
fix comments to be more specific
2de13057a6c1
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:05.
tidy up comments
b8cfe783db17
·daniel j. white / Tom Kazimiers on Aug 3 2015, 17:05.
Create README.md
ec1b6e28e55e
·dan white on Aug 3 2015, 10:28.

Jul 29 2015

Merge pull request #5 from tomka/add-costes-auto-threshold-alternative
56656007f1a2
·Tom Kazimiers on Jul 29 2015, 04:11.
Fix naming of bisection stepper
646d38da33d4
·Tom Kazimiers on Jul 29 2015, 03:59.

Feb 26 2015

Bump to next development cycle
62fa69d9a4c6
·Mark Hiner on Feb 26 2015, 15:52.
Bump to pom-fiji 7.1.0
fa3d11b13160
·Mark Hiner on Feb 26 2015, 15:50.

Feb 12 2015

Remove some unused imports
cce08cb8458d
·Tom Kazimiers on Feb 12 2015, 15:53.
Add original threshold regression of Costes
8c5e587512a5
·Tom Kazimiers on Feb 12 2015, 15:51.
Support text values in result handlers
e6ee043b3161
·Tom Kazimiers on Feb 12 2015, 15:46.

Feb 4 2015

Add stepper classes for different threshold walking patterns
0c86d3c24329
·Tom Kazimiers on Feb 4 2015, 23:36.

Jan 27 2015

Auto threshold regression: fix comment
f890be035206
·Tom Kazimiers on Jan 27 2015, 15:43.
Auto threshold regression: waslk channel two if slope below -1
4c7d570aff5b
·Tom Kazimiers on Jan 27 2015, 14:44.
Merge pull request #4 from tomka/make-auto-threshold-commutative
98c617cd5897
·Curtis Rueden on Jan 27 2015, 09:37.
Make auto threshold regression commutative wrt. channels
863fdbeaf778
·Tom Kazimiers on Jan 27 2015, 05:52.
Auto threshold regression: change comment slightly (minor)
5e8524b55543
·Tom Kazimiers on Jan 27 2015, 04:35.

Jan 25 2015

Add test for commutativity of the auto thresholding regression
15bd1cc7a89e
·Tom Kazimiers on Jan 25 2015, 03:08.
Fix some image data type variable initializations
52fb5c96d019
·Tom Kazimiers on Jan 25 2015, 03:06.

Jan 20 2015

Merge pull request #3 from tomka/refactor-data-type-range-checks
d6d44740f15c
·dscho on Jan 20 2015, 15:01.
Auto threshold regression: refactor type range checks
f9200259a8bf
·Tom Kazimiers on Jan 20 2015, 13:38.
Merge pull request #2 from tomka/fix-tests
7503d311ba3b
·dscho on Jan 20 2015, 10:22.
Fix mask creation test by initializing mask with correct dimensions
09c46ce81306
·Tom Kazimiers on Jan 20 2015, 04:24.
Move test data into Maven's test resouces folder
afb9a8450f59
·Tom Kazimiers on Jan 20 2015, 04:06.

Dec 18 2014

Bump to latest pom-fiji
310097f9fc35
·Mark Hiner on Dec 18 2014, 20:45.

Dec 11 2014

Bump to latest pom-fiji
9a651794d4d1
·Mark Hiner on Dec 11 2014, 18:47.

Nov 14 2014

Bump to pom-fiji 5.1
51deb5237fa0
·Mark Hiner on Nov 14 2014, 21:11.

Nov 11 2014

Bump to next development cycle
6705f7e6c672
·Curtis Rueden on Nov 11 2014, 00:00.

Historymaster4d0f70d420110c8cb7b8419…

May 4 2016

Apr 20 2016

Dec 24 2015

Oct 17 2015

Sep 21 2015

Sep 19 2015

Sep 18 2015

Sep 2 2015

Aug 31 2015

Aug 30 2015

Aug 27 2015

Aug 5 2015

Aug 4 2015

Aug 3 2015

Jul 29 2015

Feb 26 2015

Feb 12 2015

Feb 4 2015

Jan 27 2015

Jan 25 2015

Jan 20 2015

Dec 18 2014

Dec 11 2014

Nov 14 2014

Nov 11 2014

History
master4d0f70d420110c8cb7b8419…