Diffusion BIOP Run Macro (master) History

ijp-biop-run-macro/tests
master642c55aa2288253ebaa08e5…

Jul 4 2012

Mavenize Colocalisation_Analysis
642c55aa2288
·Johannes Schindelin on Jul 4 2012, 02:12.

Jun 20 2012

Coloc 2: get rid of some complier warnings
dd2a88ada7de
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix Imglib2 related compilation issues
f3ddcbb35211
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix Spearman T statistics test case
cd8abf46137d
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix Spearman Rank unit test
957a501392e7
·Leonardo Guizzetti / Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: use RandomAccessibleInterval instead of Img
8878ad5cec85
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: migrate to Imglib2
bb87f31f40b3
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: Added Spearman Rank Correlation.
747cf201317e
·Leonardo Guizzetti / Tom Kazimiers on Jun 20 2012, 12:47.

Oct 21 2011

Coloc 2: add test case for creation of mask based on lower-dim image
995a3ad00097
·Tom Kazimiers on Oct 21 2011, 14:01.

Oct 17 2011

Coloc 2: use better assertion statements in Pearson tests
3e95cdfb384b
·Tom Kazimiers on Oct 17 2011, 11:30.
Coloc 2: add test case for unthresholded Pearson's colocalization
4d1310359e84
·Tom Kazimiers on Oct 17 2011, 11:19.
Coloc 2: use newly made test images comparable to the Manders paper ones
193f2c0ec151
·Tom Kazimiers on Oct 17 2011, 11:09.

Oct 14 2011

Coloc 2: recreate tests that are given in the Manders paper
5945143d8f59
·Tom Kazimiers on Oct 14 2011, 15:18.

Oct 10 2011

Coloc 2: add another unit test for testing a basic mask creation method
b1ba861f1836
·Tom Kazimiers on Oct 10 2011, 17:11.
Coloc 2: style change in test case for Li's ICQ values
7245282e9c63
·Tom Kazimiers on Oct 10 2011, 15:10.
Coloc 2: add a test that checks for the correctness of a masks content
59096342af66
·Tom Kazimiers on Oct 10 2011, 14:51.
Coloc 2: add another test case for testing the creation of regular masks
82cfb9724abe
·Tom Kazimiers on Oct 10 2011, 14:51.
Coloc 2: use the correct data access methods of TwinCursor in mask tests
61ff960adef1
·Tom Kazimiers on Oct 10 2011, 14:51.
Coloc 2: rename a mask test case to refer to the right type of masks
b9c9a8b71bf6
·Tom Kazimiers on Oct 10 2011, 14:51.
Coloc 2: fix test for creation of regular masks and make it simpler
f83a2adc153b
·Tom Kazimiers on Oct 10 2011, 14:51.
Coloc 2: add two mask creation helper methods to test cases
238807e72ab7
·Tom Kazimiers on Oct 10 2011, 14:51.

Oct 7 2011

Coloc 2: adjust irregular mask test cases
b8c7aae7db57
·Tom Kazimiers on Oct 7 2011, 15:58.
Coloc 2: add option to GUI to show shuffled image from Costes calculations
f2ef0b85f9c4
·Tom Kazimiers on Oct 7 2011, 15:15.
Coloc 2: remove TwinValueRangeCursor
b2722a7c6e83
·Tom Kazimiers on Oct 7 2011, 09:31.

Oct 6 2011

Coloc 2: Eliminate last use of TwinValueRangeCursor in testing helper
d97ba394f3e6
·Tom Kazimiers on Oct 6 2011, 16:46.
Coloc 2: Modify regular ROI test cases to fit new bit-mask implementation
701b613201fa
·Tom Kazimiers on Oct 6 2011, 09:45.
Coloc 2: Add argument check for ROI mask creation
6c04c92b7bfd
·Tom Kazimiers on Oct 6 2011, 09:45.
Coloc 2: Use TwinCursor in Li's ICQ calculation
0bb6ccc39636
·Tom Kazimiers on Oct 6 2011, 09:39.
Coloc 2: Add alternative TwinCuror implementation to simplify plugin
5e2874e9b67a
·Tom Kazimiers on Oct 6 2011, 09:39.

Feb 22 2011

Coloc 2: Make MetaCursor more robust
81aa43b1860b
·Tom Kazimiers on Feb 22 2011, 10:49.

Feb 20 2011

Coloc 2: Add two more irregular ROI test cases, similar to regular ones
8ef05d5d880f
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add a black/white rectangular mask creation method for use with tests
aa4e589aeee0
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
b8806b8cb5a2
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add two more regular ROI test cases
facfb0f10202
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Fix existing regular ROI test to use "more realistic" ROIs
76a5696381bc
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make Gaussian smoothing optional for simple noise method
a9d4c4f02da9
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add simpler access method for Gaussian smoothing for use in tests
2d0b8b9d5deb
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add helper method for combining imglib images
ad37ffe68378
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add a Costes unit test case, similar to one in Costes' paper
8a6cf2bc76ef
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add two helper methods to make images binary
33070f98a04b
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
bf3a52efaa9f
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add Perlin noise generation for test images
23172aa1b6cb
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add unit test for statistics class
0ecf1fd154df
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make irregular ROI/mask test case simpler
534eba45bd3b
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make stick noise generation accassible without auto smoothing
4613ac7f5684
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Fix use of ImageJ in noise image generation for test images
941569d98760
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add one more Pearsons test with random noise data
b9959f588de7
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add a basic Costes significance test case
bb1a3a9a4d0e
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add missind comment to mean based noise image generation method
b0dc7d814a40
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add another random image generation method, it spreads random sticks
ab09cb4aeeff
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: new test image creation method for images with a mean and a spread of…
080904f047f6
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: make testImage creation methods public
9c66d2959aa6
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: made a gaussian smooth method in the testImageAcessor class
84578fb00580
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add basic irregular ROI/mask test. Mask self with self and inverted
c92210835267
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add helper methods for tests to invert imglib images
f078dee6de2a
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Move our imglib modifications to the right namespace
08ad99cbd48d
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Do some generics argument adding, clean up, code police
e159abb4e0ae
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Tests: Change sample image type to UnsignedByteType
83adab3c1b62
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add simple test case for regular ROIs
fbc942924a9a
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Use new package of TypeConverter
bf65ac1c9f3d
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add basic Li ICQ test cases
69e0cff26ba9
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add basic unit tests for Pearsons correlation
75a784cfab00
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add abstract test case super class for keeping images
a0895152b030
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add class to load images from Jar and to generate noise images for…
7b23acc0b441
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add pair of zero coloc. and pair of positive coloc. test images
867408240e62
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add package information to all files
d30e7e98f5a2
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.

ijp-biop-run-macro/testsmaster642c55aa2288253ebaa08e5…

Jul 4 2012

Jun 20 2012

Oct 21 2011

Oct 17 2011

Oct 14 2011

Oct 10 2011

Oct 7 2011

Oct 6 2011

Feb 22 2011

Feb 20 2011

ijp-biop-run-macro/tests
master642c55aa2288253ebaa08e5…