lammps/docmaster
lammps/doc
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
c9bc14133537 | Axel Kohlmeyer | remove doc text explaining restrictions that are lifted with the changes in… | Apr 14 2017 | |||
2f32fb7f8bda | Steve Plimpton | patch 13Apr17 | Apr 13 2017 | |||
4da8c1c4e2be | Steve Plimpton | patch 11Apr17 | Apr 11 2017 | |||
49dd9449b875 | Steve Plimpton | fix gcmc updates from Aidan, trimming of output for replica commands | Apr 11 2017 | |||
06cebb9fb4b8 | sjplimp/GitHub | Merge pull request #445 from Pakketeretet2/extract_for_bond | Apr 11 2017 | |||
b9d844ca8dcb | sjplimp/GitHub | Merge pull request #444 from ohenrich/user-cgdna | Apr 11 2017 | |||
84ea8a79e6b2 | Axel Kohlmeyer | correct link for dispersion parameter how-to and reformat | Apr 11 2017 | |||
497a5d88af88 | Oliver Henrich | Merge branch 'master' into user-cgdna | Apr 4 2017 | |||
8993daaa31db | Oliver Henrich | Minor update to docu | Apr 4 2017 | |||
28e86917a05e | Stefan Paquay | Made fix adapt work with bond_harmonic. | Apr 4 2017 | |||
ae56b9ad8915 | Steve Plimpton | patch 31Mar17 for stable release | Mar 30 2017 | |||
c733204a700c | Oliver Henrich | Updated lammps.book and install script | Mar 29 2017 | |||
4b9d0a956632 | Steve Plimpton | sync with SVN | Mar 28 2017 | |||
0637f2387518 | Steve Plimpton | patch 28Mar17 | Mar 28 2017 | |||
9f6e126a2f2e | sjplimp/GitHub | Merge pull request #437 from ohenrich/user-cgdna | Mar 28 2017 | |||
80e5111dcabc | sjplimp/GitHub | Merge pull request #434 from akohlmey/imgflags-in-library | Mar 28 2017 | |||
1d8f0c762d2c | Axel Kohlmeyer | Merge branch 'master' into fixes-for-stable | Mar 28 2017 | |||
111d350a223f | Steve Plimpton | fix gcmc units change for chemical potential | Mar 28 2017 | |||
66a6375405b6 | Oliver Henrich | Resolved merge conflict | Mar 28 2017 | |||
604afebf6fef | Oliver Henrich | Update to oxDNA2 | Mar 28 2017 | |||
8afed61db1c8 | Oliver Henrich | Upgrade to oxDNA2 | Mar 28 2017 | |||
f8da9a866a73 | Axel Kohlmeyer | synchronize dump custom/vtk documentation with that of dump custom | Mar 28 2017 | |||
fc51c38abb2b | Axel Kohlmeyer | add some docs for the special treatment of image flags | Mar 28 2017 | |||
a241b2d0f7c8 | Axel Kohlmeyer | fix problems with references | Mar 27 2017 | |||
61e7595a94bf | Axel Kohlmeyer | remove references to xmovie, streamline dump and viz descriptions | Mar 27 2017 | |||
3dfe4505ddcb | Steve Plimpton | 24Mar17 patch sync with SVN | Mar 24 2017 | |||
394e9b42b06a | Steve Plimpton | new CHARMM pair styles with force swithing/shifting | Mar 24 2017 | |||
f5a85d68add0 | sjplimp/GitHub | Merge pull request #429 from akohlmey/updates-for-stable | Mar 24 2017 | |||
277b93cb8956 | sjplimp/GitHub | Merge pull request #417 from tonnamb/add-pair-zhou | Mar 24 2017 | |||
8820315ff96a | Axel Kohlmeyer | Merge branch 'master' into updates-for-stable | Mar 23 2017 | |||
44841f689127 | Steve Plimpton | fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof | Mar 23 2017 | |||
2cdcd6d63045 | Axel Kohlmeyer | remove one more reference to xmovie | Mar 23 2017 | |||
b88a7496808b | Axel Kohlmeyer | rename a couple more references to pair style zhou into momb | Mar 23 2017 | |||
6d395ec511b3 | Tonnam Balankura | change name zhou to momb in docs, fix grammar | Mar 23 2017 | |||
bf560e78f348 | Tonnam Balankura | edit description and add related commands and default | Mar 22 2017 | |||
1db5834b99d0 | Axel Kohlmeyer | Revert "Cleanup of a few more references to obsoleted and removed tools like… | Mar 22 2017 | |||
3070b043be1b | Axel Kohlmeyer | Revert "correct inconsistent anchors" | Mar 22 2017 | |||
ef3f323fc47d | Axel Kohlmeyer | Revert "remove reference to removed section on VMD scripts" | Mar 22 2017 | |||
43a304f56451 | Axel Kohlmeyer | remove reference to removed section on VMD scripts | Mar 22 2017 | |||
a79aef65e84a | Axel Kohlmeyer | correct inconsistent anchors | Mar 22 2017 | |||
66eb9c248620 | Axel Kohlmeyer | remove reference to removed section on VMD scripts | Mar 22 2017 | |||
a14d58259c3e | Axel Kohlmeyer | correct inconsistent anchors | Mar 22 2017 | |||
127597023df5 | Axel Kohlmeyer | Cleanup of a few more references to obsoleted and removed tools like xmovie | Mar 22 2017 | |||
3ec16f3630c4 | Axel Kohlmeyer | fully integrate support for doc_anchor_check into docs makefile | Mar 22 2017 | |||
cb9059652daa | Axel Kohlmeyer | a few more small changes to integrate pair style zhou properly | Mar 22 2017 | |||
43f27250b5a5 | Axel Kohlmeyer | Merge branch 'add-pair-zhou' of https://github.com/tonnamb/lammps into pull-417 | Mar 22 2017 | |||
c5d561a31260 | Tonnam Balankura | pair_zhou docs: add equation, add link in section_commands and pairs | Mar 22 2017 | |||
743508437575 | Oliver Henrich | Verified oxDNA with modified nucleotide layout | Mar 22 2017 | |||
734e639c5d9d | Axel Kohlmeyer | correct typo reported on lammps-users | Mar 21 2017 | |||
dcede304dff9 | Steve Plimpton | changes for next patch, 2d disc options for spheres, fix external upgrade, bug… | Mar 21 2017 | |||
6482df6c2fbf | Axel Kohlmeyer | remove references to deleted tools. update/clarify section on restart2data | Mar 20 2017 | |||
0c9cd11b4e95 | Axel Kohlmeyer | have the relevant LAMMPS version embedded into top part of the html manual | Mar 20 2017 | |||
3b44c3ff1d5f | Axel Kohlmeyer | remove non-ASCII characters from doc source files | Mar 20 2017 | |||
0d0c2b65f763 | Axel Kohlmeyer | correct stan's email address | Mar 20 2017 | |||
2218a9d704dc | Axel Kohlmeyer | emphasize that the online manual is following the latest development version | Mar 20 2017 | |||
0a6b33cd78a6 | Axel Kohlmeyer | remove duplicate paragraph in nose-hoover fix docs | Mar 20 2017 | |||
52987a36158b | Tonnam Balankura | Started writing pair_zhou.txt | Mar 19 2017 | |||
4a90bca7a3b4 | Steve Plimpton | patch 17Mar17 | Mar 17 2017 | |||
fcc3b3bd365d | sjplimp/GitHub | Merge pull request #421 from akohlmey/memory-output | Mar 17 2017 | |||
53a3877c3d3e | sjplimp/GitHub | Merge pull request #420 from rbberger/doc_anchor_check | Mar 17 2017 | |||
621d7d5ce0f2 | Richard Berger | Correct off-by-one error in line number reported | Mar 17 2017 | |||
1bb9c7da42e5 | Richard Berger | Remove some duplicate anchors in documentation | Mar 17 2017 | |||
f893104b18d1 | Richard Berger | Add anchor_check to doc Makefile | Mar 17 2017 | |||
efb2a942e046 | Richard Berger | Add utility to detect duplicate anchors in documentation files | Mar 17 2017 | |||
070ce33a13df | Axel Kohlmeyer | improve memory usage reporting in info and output class | Mar 16 2017 | |||
f604f86cfcd4 | Axel Kohlmeyer | add fix filter/corotate to some administrative files | Mar 16 2017 | |||
0d8f74f0c52e | Axel Kohlmeyer | Merge branch 'filter_corotate' of https://github.com/lukin17/lammps into pull… | Mar 15 2017 | |||
3a2da51a8210 | sjplimp/GitHub | Merge pull request #413 from ohenrich/user-cgdna | Mar 15 2017 | |||
b1c59126f750 | sjplimp/GitHub | Merge pull request #415 from stanmoore1/kk_qeq | Mar 15 2017 | |||
4c77838514d1 | sjplimp/GitHub | Merge pull request #414 from sstrong99/flow-gauss-doc-addition | Mar 15 2017 | |||
c3ce3747e049 | lukin17 | Added fix filter/corotate. | Mar 15 2017 | |||
fdc390ad0548 | Stan Moore | Tweaking docs for Kokkos package | Mar 14 2017 | |||
580f6b567b12 | Stan Moore | Add neigh/qeq option to Kokkos | Mar 14 2017 | |||
27b1c33a1680 | Steven Strong | updated the NEMD discussion in the how-to documentation about flow/gauss | Mar 14 2017 | |||
7a75cd111c3d | Oliver Henrich | Minor updates in documentation and setup tool, merge before upgrade to oxDNA2 | Mar 14 2017 | |||
23b828793333 | Oliver Henrich | Updated documentation and simple setup tool | Mar 14 2017 | |||
4cfe623bc17d | Tim Mattox | Correct a typo in the fix_halt.txt documentation. | Mar 11 2017 | |||
f871ecdc67db | Steve Plimpton | change to RCB cuts in load-balancing commands, also a new option for fix halt | Mar 10 2017 | |||
f70752c18f8d | Giacomo Fiorin | Include PDF of Colvars doc missing in previous commit | Mar 10 2017 | |||
0b4adaa9e6a1 | Giacomo Fiorin | Backport typo fixes that were not previously pushed to the Colvars repository | Mar 10 2017 | |||
5fe620663813 | Giacomo Fiorin | Update Colvars module to version 2017-03-10 | Mar 10 2017 | |||
79b005dc3d5f | Steve Plimpton | patch 7Mar17 | Mar 7 2017 | |||
920641bbffbc | sjplimp/GitHub | Merge pull request #399 from rbberger/docs_spelling_fixes | Mar 7 2017 | |||
4af6557568e7 | sjplimp/GitHub | Merge pull request #394 from jaapkroe/kolmogorov-crespi | Mar 7 2017 | |||
020e75e7efff | sjplimp/GitHub | Merge pull request #386 from akohlmey/doc-consistentcy | Mar 7 2017 | |||
efaa4c67109f | Steve Plimpton | new neigh_modify exclude option, other SNAP changes | Mar 7 2017 | |||
21be86c42393 | Richard Berger | Fix typos in txt2html | Mar 7 2017 | |||
007f3c66a033 | Richard Berger | Third batch of spelling fixes in manual | Mar 7 2017 | |||
32708860a9fa | Richard Berger | Add remaining false positives | Mar 7 2017 | |||
fc9eebb9367c | Richard Berger | Added spellcheck utility to documentation build | Mar 6 2017 | |||
084d831bce01 | Richard Berger | Second batch of spelling fixes in manual | Mar 6 2017 | |||
fd78486086d9 | Richard Berger | First batch of spelling fixes in manual | Mar 6 2017 | |||
8a0e44db83de | Jaap Kroes | updated documentation and ev_tally | Mar 1 2017 | |||
3ac74a1d6995 | Axel Kohlmeyer | update lammps.book file for latest doc changes | Feb 28 2017 | |||
3605208a45bb | Axel Kohlmeyer | add a few more missing details for integrating pair style kolmogorov/crespi/z | Feb 28 2017 | |||
9b01949cacfc | Axel Kohlmeyer | make the introduction of the command-by-category list less confusing | Feb 28 2017 | |||
323570c92036 | Jaap Kroes | added jpg for kolmogorov-crespi-z equations and fixed hybrid/overlay check in… | Feb 28 2017 | |||
a1b40b902d3e | Jaap Kroes | Added Kolmogorov-Crespi potential | Feb 28 2017 | |||
2708c8683626 | Axel Kohlmeyer | fix typos: moleclue -> molecule | Feb 28 2017 | |||
458b6749e7b6 | Oliver Henrich | Corrected comment in 3' to 5' directionality check. | Feb 22 2017 |
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