Diffusion lammps (master) History

lammps/src
mastere42678ed517d8bc95f16da0…

Feb 22 2017

USER-DPD: track & use the extent of the local atoms in the bins
e42678ed517d
·Tim Mattox on Feb 22 2017, 21:08.
USER-DPD: Make another version of coord2bin() for nbin_ssa
ff2786c86c4c
·Tim Mattox on Feb 22 2017, 21:08.
USER-DPD: Copy inline coord2bin() functions from nbin_kokkos into nbin_ssa
638448676404
·Tim Mattox on Feb 22 2017, 21:08.
USER-DPD: new neighbor list code for SSA that gives neighbors to ghosts. This…
0512e7886067
·Tim Mattox on Feb 22 2017, 21:08.
USER-DPD: make pair_dpd_fdt* check more generically for use of fix_shardlow…
2db66e49b444
·Tim Mattox on Feb 22 2017, 21:08.
Merge branch 'FixRX_Kokkos_merge' into USER-DPD_kokkos
e76cad358b3b
·Tim Mattox on Feb 22 2017, 20:25.
KOKKOS: fix a compile-time error caused by merge of patch 21Feb17 Remove the…
0a751c59012e
·Tim Mattox on Feb 22 2017, 17:52.
Merge branch 'master' into USER-DPD_kokkos as of patch 21Feb17
83988a1026f4
·Tim Mattox on Feb 22 2017, 17:29.
patch 21Feb17 sync with GHub
49e83b434800
·Steve Plimpton on Feb 22 2017, 00:07.

Feb 21 2017

Merge pull request #385 from akohlmey/collected-small-bugfixes
6e89ccd522f5
·sjplimp / GitHub on Feb 21 2017, 23:59.
remove a debug print line
3dbbea342a3b
·Steve Plimpton on Feb 21 2017, 23:57.
Merge pull request #383 from stanmoore1/rshan_class2_kk
b70c670aac56
·sjplimp / GitHub on Feb 21 2017, 23:52.
Merge pull request #382 from timattox/master_kokkos_neigh_bugfix
1d17cae407ff
·sjplimp / GitHub on Feb 21 2017, 23:51.
Merge pull request #379 from ndtrung81/pppm-gpu-compute-group-group
d001a093455b
·sjplimp / GitHub on Feb 21 2017, 23:50.
Merge pull request #378 from timattox/USER-DPD_ssa_update
cb9d42da0896
·sjplimp / GitHub on Feb 21 2017, 23:50.
new SNAP potential for W
1cd4c48cccdb
·Steve Plimpton on Feb 21 2017, 23:49.

Feb 17 2017

correct a logic bug in fix wall/gran/region
a88136c3f50d
·Axel Kohlmeyer on Feb 17 2017, 23:58.

Feb 15 2017

Add copymode protection to class2 styles
5f93fad012d8
·Stan Moore on Feb 15 2017, 21:56.
Fix a few issues with Kokkos class2 files
c6c1852b3b1a
·Stan Moore on Feb 15 2017, 20:44.
Add files from Ray Shan for Kokkos version of class2 angle, bond, etc.
69a8e19dc5eb
·Stan Moore on Feb 15 2017, 20:29.
neighbor_kokkos.cpp: Don't call grow() on neighbor lists that are copies. This…
928947dcea24
·Tim Mattox on Feb 15 2017, 17:49.

Feb 14 2017

Fixed bugs with pppm/gpu when used with compute group/group
20806dd86acf
·Trung Nguyen on Feb 14 2017, 07:26.

Feb 13 2017

Removed printf's from FixRXKokkos and FixRX.
acc5bde0fe53
·Christopher Stone on Feb 13 2017, 22:36.
Switched to operator()'s and Tag's for the Kokkos launch objects.
799d55e09713
·Christopher Stone on Feb 13 2017, 22:33.
Update FixRXKokkos for Cuda build. Added inline and other KOKKOS macros.
4e9c8f496235
·Christopher Stone on Feb 13 2017, 22:33.
Switched to using Kokkos device data for ODE scratch data.
2f32c1a9af6f
·Christopher Stone on Feb 13 2017, 22:33.
Added Kokkos-like array datatype into RK4 and RHS in FixRXKokkos.
4ac7a5d1f2e6
·Christopher Stone on Feb 13 2017, 22:33.
Added ODE diagnostics to FixRxKokkos using Kokkos managed data.
93d99ec8d057
·Christopher Stone on Feb 13 2017, 22:33.
Code clean-up for FixRxKokkos.
4e8351d9c8cb
·Christopher Stone on Feb 13 2017, 22:33.
Fixed errors in FixRxKokkos kokkos neighbor lists initialization and usage and…
f2d005fb8db0
·Christopher Stone on Feb 13 2017, 22:33.
Added setup_pre_force, pack/unpack methods to FixRxKokkos.
0d57a1d831e6
·Christopher Stone on Feb 13 2017, 22:33.
Added kokkos datatypes to FixRxKokkos::computeLocalTemperature(...)
acba25c38312
·Christopher Stone on Feb 13 2017, 22:33.
Updates to FixRxKokkos ...
843f3a919256
·Christopher Stone on Feb 13 2017, 22:33.
Updated FixRxKokkos to use kokkos-managed data objects.
2ea900df007e
·Christopher Stone on Feb 13 2017, 22:33.
Updated KOKKOS installer and updated USER-DPD FixRx to match KOKKOS version.
70fa9189a8c8
·Christopher Stone on Feb 13 2017, 22:33.
Added kokkos-managed parameters for FixRxKokkos.
41d3903f5a72
·Christopher Stone on Feb 13 2017, 22:33.
Initial bare-bones port of FixRX to Kokkos.
43d61f313f56
·Christopher Stone on Feb 13 2017, 22:33.
Merge branch 'USER-DPD_ssa_update' into USER-DPD_kokkos
dc16228a602d
·Tim Mattox on Feb 13 2017, 21:03.
USER-DPD: performance optimizations to ssa_update() in fix_shardlow Overall…
15008c9d1889
·Tim Mattox on Feb 13 2017, 19:11.
Merge branch 'master' into USER-DPD_kokkos as of patch 13Feb17
96a43e8ef1a4
·Tim Mattox on Feb 13 2017, 18:29.
sync 13Feb17 patch back to GH
cb982f2f28ab
·Steve Plimpton on Feb 13 2017, 17:05.
Merge pull request #372 from akohlmey/fft-cleanup
4843296d4e57
·sjplimp / GitHub on Feb 13 2017, 16:53.
patch 12Feb17 - change int to tagint for compute group/group
2bdda8f6c013
·Steve Plimpton on Feb 13 2017, 16:40.

Feb 10 2017

added molecule option to compute group/group command
0068ef56168f
·Steve Plimpton on Feb 10 2017, 17:25.

Feb 8 2017

fix typo
a5f830c40c6e
·Axel Kohlmeyer on Feb 8 2017, 20:33.

Feb 6 2017

Merge branch 'master' into USER-DPD_kokkos Fixed trivial merge conflict in…
dc9c2399b28d
·Tim Mattox on Feb 6 2017, 21:45.

Feb 3 2017

Merge branch 'master' into fft-cleanup
191453e1c73d
·Axel Kohlmeyer on Feb 3 2017, 22:53.
Merge pull request #373 from stanmoore1/kk_more_bugfixes
207adc3968ff
·sjplimp / GitHub on Feb 3 2017, 22:45.
Merge pull request #368 from Pakketeretet2/kokkos_morse
84c517159d07
·sjplimp / GitHub on Feb 3 2017, 22:45.
Merge pull request #366 from rbberger/kokkos_lammps_bigbig_fix
6ca377436f8b
·sjplimp / GitHub on Feb 3 2017, 22:43.
Merge pull request #362 from ibaned/warnings2
dc34a32602ef
·sjplimp / GitHub on Feb 3 2017, 22:43.

Feb 2 2017

Adding missing friend statement to pair_lj_class2_coul_cut_kokkos
067119f6c642
·Stan Moore on Feb 2 2017, 23:21.
Fixing more Kokkos per-atom and fdotr issues
1834a5e46c3a
·Stan Moore on Feb 2 2017, 23:21.
Fixing typo in pair_buck_coul_cut_kokkos
6a4918b39abe
·Stan Moore on Feb 2 2017, 23:21.
Fixing fdotr in pair_buck_coul_cut_kokkos
5da0d393921d
·Stan Moore on Feb 2 2017, 21:35.
Fixing per-atom ev issue
6f92429602d6
·Stan Moore on Feb 2 2017, 21:34.
Add missing typedef in Kokkos pair styles
38e0e4bb69ff
·Stan Moore on Feb 2 2017, 21:24.
Fixing Kokkos per-atom e/v issue
daf9f95381c2
·Stan Moore on Feb 2 2017, 21:09.
Merge pull request #2 from stanmoore1/kk_tag_bugfixes
6bcec9c61d18
·Richard Berger / GitHub on Feb 2 2017, 14:57.
remove support for obsolete legacy FFT libraries and point -DFFT_FFTW to FFTW3
9d1991bf840c
·Axel Kohlmeyer on Feb 2 2017, 14:10.
Updated contributing authors and docs
0a87b7443a75
·Stefan Paquay on Feb 2 2017, 13:42.

Feb 1 2017

Fixing tagint and imageint issues in Kokkos package
7ee45ec5f354
·Stan Moore on Feb 1 2017, 19:52.
Ported Morse to KOKKOS
d4c9e2500be8
·Stefan Paquay on Feb 1 2017, 17:45.
Removed traces of pair morse/kk
6232073d3b76
·Stefan Paquay on Feb 1 2017, 17:39.
Removed traces of pair morse/kk
ed59193d13f8
·Stefan Paquay on Feb 1 2017, 17:39.
silence compiler warning about dead code
bcb1d94b9a12
·Axel Kohlmeyer on Feb 1 2017, 00:28.
correct issue with compiling for -DLAMMPS_BIGBIG in fix qeq/reax/kk
fbe30b56835c
·Axel Kohlmeyer on Feb 1 2017, 00:13.

Jan 31 2017

Merge branch 'kokkos_lammps_bigbig_fix' of https://github.com/rbberger/lammps…
9ef55fedf795
·Axel Kohlmeyer on Jan 31 2017, 23:23.

Jan 30 2017

Merge branch 'master' into USER-DPD_kokkos
b3e9006aefcb
·Tim Mattox on Jan 30 2017, 18:04.
Merge pull request #364 from stanmoore1/kk_triclinic_neighlist
997142a4c1d4
·sjplimp / GitHub on Jan 30 2017, 15:27.

Jan 28 2017

Fix data type of molecule array in npair_kokkos.h
51a0b6b445e5
·Richard Berger on Jan 28 2017, 13:49.

Jan 27 2017

Whitespace change to npair_kokkos
59f4a77dd509
·Stan Moore on Jan 27 2017, 23:17.
More tweaks to npair_kokkos for triclinic
579cc6d7aab5
·Stan Moore on Jan 27 2017, 23:13.
Adding support to npair_kokkos for triclinic-newton-on neighborlists
5afd3e995b74
·Stan Moore on Jan 27 2017, 22:18.
Adding missing sync/modified in atom_vec_dpd_kokkos
a1f4551ac20e
·Stan Moore on Jan 27 2017, 18:18.
more preference of datamask over custom sync
2a6f5e651ce6
·Dan Ibanez on Jan 27 2017, 17:35.
kspace & dihedral can't do their own sync/modify
09fc8b0bd731
·Dan Ibanez on Jan 27 2017, 16:39.
pppm_kokkos: remove useless statement
e5d0bde78339
·Dan Ibanez on Jan 27 2017, 16:35.
pppm_kokkos: don't shadow member variables
9daf7fb6509e
·Dan Ibanez on Jan 27 2017, 16:35.
pppm_kokkos: remove unused variables
b5d622c6a381
·Dan Ibanez on Jan 27 2017, 16:35.
consistent #ifdefs for fft3d variable (2)
2023fa28e017
·Dan Ibanez on Jan 27 2017, 16:35.
fft3d: use C++ loop declarations
5b29515849ad
·Dan Ibanez on Jan 27 2017, 16:35.
fft3d : remove unused variables
5b18421dd204
·Dan Ibanez on Jan 27 2017, 16:35.
fft3d: only declare variables when used
cf95ea070973
·Dan Ibanez on Jan 27 2017, 16:35.
consistent #ifdefs for fft3d variable
6a74a81da023
·Dan Ibanez on Jan 27 2017, 16:35.
add missing KOKKOS_INLINE_FUNCTION for params
f0a4ed615dc5
·Dan Ibanez on Jan 27 2017, 16:35.
remove unused variables from fix_cmap
cfe818a17564
·Dan Ibanez on Jan 27 2017, 16:35.
Merge remote branch 'upstream/master' into USER-DPD_kokkos
f3c591960603
·Stan Moore on Jan 27 2017, 16:08.

Jan 26 2017

sync GHub with SVN
f8506fee23e1
·Steve Plimpton on Jan 26 2017, 22:06.
Merge pull request #354 from stanmoore1/kokkos_bugfixes
18e55843113a
·sjplimp / GitHub on Jan 26 2017, 21:51.
Merge pull request #361 from akohlmey/user-omp-fix-per-atom-data
851f80464fd2
·sjplimp / GitHub on Jan 26 2017, 21:50.
Merge pull request #358 from ibaned/warnings
5971d4c9948c
·sjplimp / GitHub on Jan 26 2017, 21:49.
Merge pull request #352 from akohlmey/fix-skip-with-ghost-issue
868d95f0a500
·sjplimp / GitHub on Jan 26 2017, 21:47.
fix bug where per atom data for USER-OMP was reducing the wrong arrays with…
8b7bd9d88eb4
·Axel Kohlmeyer on Jan 26 2017, 20:59.
Removing duplicate code in pair_exp6_rx_kokkos
ebe27c65e186
·Stan Moore on Jan 26 2017, 18:33.
Fixing warning in pair_dpd_fdt_energy_kokkos
85c8db5f86c7
·Stan Moore on Jan 26 2017, 18:10.
Fixing Kokkos warnings
be13ecfa17cf
·Stan Moore on Jan 26 2017, 18:10.
Fixing warnings in Kokkos
6cc969db9282
·Stan Moore on Jan 26 2017, 17:24.
Another tweak to sync/modify in pair_multi_lucy_rx_kokkos
8050eb3aa85c
·Stan Moore on Jan 26 2017, 17:17.
Adding sync/modify to pair_multi_lucy_rx_kokkos
c617bc180afd
·Stan Moore on Jan 26 2017, 16:52.

lammps/srcmastere42678ed517d8bc95f16da0…

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lammps/src
mastere42678ed517d8bc95f16da0…